diff --git a/.github/workflows/ci-cd.yml b/.github/workflows/ci-cd.yml new file mode 100644 index 0000000..afaaaf0 --- /dev/null +++ b/.github/workflows/ci-cd.yml @@ -0,0 +1,83 @@ +name: ci-cd + +on: [push, pull_request] + +jobs: + ci: + runs-on: ubuntu-latest + steps: + - name: Set up Python + uses: actions/setup-python@v4 + with: + python-version: "3.9" + + - name: Check-out repository + uses: actions/checkout@v3 + + - name: Install poetry + uses: snok/install-poetry@v1 + + - name: Install package + run: poetry install + + - name: Mypy type check + run: poetry run mypy . + + - name: Test with pytest + run: poetry run pytest tests/ --cov=provenaclient --cov-report=xml + + - name: Use Codecov to track coverage + uses: codecov/codecov-action@v3 + with: + files: ./coverage.xml + + - name: Build documentation + run: poetry run make html --directory docs/ + + cd: + permissions: + id-token: write + contents: write + needs: ci + if: github.event_name == 'push' && (github.ref == 'refs/heads/main' || github.ref == 'refs/heads/inital-branch') + runs-on: ubuntu-latest + steps: + - name: Set up Python + uses: actions/setup-python@v4 + with: + python-version: "3.9" + + - name: Check-out repository + uses: actions/checkout@v3 + with: + fetch-depth: 0 + + - name: Use Python Semantic Release to prepare release + id: release + uses: python-semantic-release/python-semantic-release@v8.3.0 + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + + - name: Publish to TestPyPI + uses: pypa/gh-action-pypi-publish@release/v1 + if: steps.release.outputs.released == 'true' + with: + repository-url: https://test.pypi.org/legacy/ + + - name: Test install from TestPyPI + if: steps.release.outputs.released == 'true' + run: | + pip install \ + --index-url https://test.pypi.org/simple/ \ + --extra-index-url https://pypi.org/simple \ + provenaclient + + - name: Publish to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + if: steps.release.outputs.released == 'true' + + - name: Publish package distributions to GitHub Releases + uses: python-semantic-release/upload-to-gh-release@main + if: steps.release.outputs.released == 'true' + with: + github_token: ${{ secrets.GITHUB_TOKEN }} diff --git a/.gitignore b/.gitignore index 68bc17f..b07c663 100644 --- a/.gitignore +++ b/.gitignore @@ -20,6 +20,7 @@ parts/ sdist/ var/ wheels/ +pip-wheel-metadata/ share/python-wheels/ *.egg-info/ .installed.cfg @@ -49,7 +50,6 @@ coverage.xml *.py,cover .hypothesis/ .pytest_cache/ -cover/ # Translations *.mo @@ -72,7 +72,6 @@ instance/ docs/_build/ # PyBuilder -.pybuilder/ target/ # Jupyter Notebook @@ -83,9 +82,7 @@ profile_default/ ipython_config.py # pyenv -# For a library or package, you might want to ignore these files since the code is -# intended to run in multiple environments; otherwise, check them in: -# .python-version +.python-version # pipenv # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. @@ -94,22 +91,7 @@ ipython_config.py # install all needed dependencies. #Pipfile.lock -# poetry -# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. -# This is especially recommended for binary packages to ensure reproducibility, and is more -# commonly ignored for libraries. -# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control -#poetry.lock - -# pdm -# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. -#pdm.lock -# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it -# in version control. -# https://pdm.fming.dev/#use-with-ide -.pdm.toml - -# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm +# PEP 582; used by e.g. github.com/David-OConnor/pyflow __pypackages__/ # Celery stuff @@ -145,16 +127,16 @@ dmypy.json # Pyre type checker .pyre/ +**__pycache__ -# pytype static type analyzer -.pytype/ +# PyCharm +.idea/ -# Cython debug symbols -cython_debug/ +# RStudio project files +**.Rproj.user/ +**.Rproj.user* +**.Rproj +**.Rhistory -# PyCharm -# JetBrains specific template is maintained in a separate JetBrains.gitignore that can -# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore -# and can be added to the global gitignore or merged into this file. For a more nuclear -# option (not recommended) you can uncomment the following to ignore the entire idea folder. -#.idea/ +# MacOS +.DS_Store \ No newline at end of file diff --git a/.readthedocs.yml b/.readthedocs.yml new file mode 100644 index 0000000..ae72745 --- /dev/null +++ b/.readthedocs.yml @@ -0,0 +1,27 @@ +# .readthedocs.yaml +# Read the Docs configuration file +# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details + +# Required +version: 2 + +# Set the OS, Python version and other tools you might need +build: + os: ubuntu-22.04 + tools: + python: "3.9" + jobs: + post_create_environment: + # Install poetry + # https://python-poetry.org/docs/#installing-manually + - pip install poetry + # Tell poetry to not use a virtual environment + - poetry config virtualenvs.create false + post_install: + # Install dependencies with 'docs' dependency group + # https://python-poetry.org/docs/managing-dependencies/#dependency-groups + - poetry install + +# Build documentation in the "docs/" directory with Sphinx +sphinx: + configuration: docs/conf.py diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..1dae1c5 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,7 @@ +# Changelog + + + +## v0.1.0 (04/04/2024) + +- First release of `provenaclient`! \ No newline at end of file diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100755 index 0000000..18feb0b --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,73 @@ +# Contributing + +Contributions are welcome, and they are greatly appreciated! Every little bit +helps, and credit will always be given. + +## Types of Contributions + +### Report Bugs + +If you are reporting a bug, please include: + +* Your operating system name and version. +* Any details about your local setup that might be helpful in troubleshooting. +* Detailed steps to reproduce the bug. + +### Fix Bugs + +Look through the GitHub issues for bugs. Anything tagged with "bug" and "help +wanted" is open to whoever wants to implement it. + +### Implement Features + +Look through the GitHub issues for features. Anything tagged with "enhancement" +and "help wanted" is open to whoever wants to implement it. + +### Write Documentation + +You can never have enough documentation! Please feel free to contribute to any +part of the documentation, such as the official docs, docstrings, or even +on the web in blog posts, articles, and such. + +### Submit Feedback + +If you are proposing a feature: + +* Explain in detail how it would work. +* Keep the scope as narrow as possible, to make it easier to implement. +* Remember that this is a volunteer-driven project, and that contributions + are welcome :) + +## Get Started! + +Ready to contribute? Here's how to set up `provenaclient` for local development. + +1. Download a copy of `provenaclient` locally. +2. Install `provenaclient` using `poetry`: + + ```console + $ poetry install + ``` + +3. Use `git` (or similar) to create a branch for local development and make your changes: + + ```console + $ git checkout -b name-of-your-bugfix-or-feature + ``` + +4. When you're done making changes, check that your changes conform to any code formatting requirements and pass any tests. + +5. Commit your changes and open a pull request. + +## Pull Request Guidelines + +Before you submit a pull request, check that it meets these guidelines: + +1. The pull request should include additional tests if appropriate. +2. If the pull request adds functionality, the docs should be updated. +3. The pull request should work for all currently supported operating systems and versions of Python. + +## Code of Conduct + +Please note that the `provenaclient` project is released with a +Code of Conduct. By contributing to this project you agree to abide by its terms. diff --git a/README.md b/README.md index 193d8a5..daebb2a 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,39 @@ -# provena-python-client -Client library for interfacing with a Provena instance +# provenaclient + +A client library for interfacing with a Provena instance. + +## Installation + +```bash +$ pip install provenaclient +``` + +## Usage + +### How to get started with Poetry + +1) Run the Command: `curl -sSL https://install.python-poetry.org | python3 -`. +2) Check if poetry was successfully installed by running `poetry --version`. +3) You should now have be able to see your poetry version successfully. +4) Now run the command `poetry shell`. This will activate the poetry virtual environment for you. +5) Now finally run the command `poetry install`. This will install all dependencies defined within pyproject.toml. + +### My Poetry Installation is not being detected? +1) This means that your PATH variable does not include the Poetry directory. +2) Open your .bashrc file, using the command `nano ~/.bashrc`. +3) Add the following line at the end of the file, `export PATH= "$HOME/.local/bin:$PATH"`. +4) Reload your .bashrc file, using the command `source ~/.bashrc`. +5) Verify that your poetry is now running, using the command `poetry --version`. + + + +## Contributing +TODO + +## License + +`provenaclient` was created by Provena Development Team (CSIRO). Provena Development Team (CSIRO) retains all rights to the source and it may not be reproduced, distributed, or used to create derivative works. + +## Credits + +`provenaclient` was created with [`cookiecutter`](https://cookiecutter.readthedocs.io/en/latest/) and the `py-pkgs-cookiecutter` [template](https://github.com/py-pkgs/py-pkgs-cookiecutter). diff --git a/dev-requirements.txt b/dev-requirements.txt new file mode 100644 index 0000000..0153b6d --- /dev/null +++ b/dev-requirements.txt @@ -0,0 +1,2 @@ +cookiecutter +mypy \ No newline at end of file diff --git a/docs/Makefile b/docs/Makefile new file mode 100755 index 0000000..b26472c --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,19 @@ +# Minimal makefile for Sphinx documentation + +# You can set these variables from the command line. +SPHINXOPTS = +SPHINXBUILD = python -msphinx +SPHINXPROJ = provenaclient +SOURCEDIR = . +BUILDDIR = _build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) \ No newline at end of file diff --git a/docs/changelog.md b/docs/changelog.md new file mode 100755 index 0000000..8261b35 --- /dev/null +++ b/docs/changelog.md @@ -0,0 +1,2 @@ +```{include} ../CHANGELOG.md +``` \ No newline at end of file diff --git a/docs/conf.py b/docs/conf.py new file mode 100755 index 0000000..6f096fb --- /dev/null +++ b/docs/conf.py @@ -0,0 +1,36 @@ +# Configuration file for the Sphinx documentation builder. +# +# This file only contains a selection of the most common options. For a full +# list see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Project information ----------------------------------------------------- + +project = u"provenaclient" +copyright = u"2024, Parth Kulkarni" +author = u"Parth Kulkarni" + +# -- General configuration --------------------------------------------------- + +# Add any Sphinx extension module names here, as strings. They can be +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# ones. +extensions = [ + "myst_nb", + "autoapi.extension", + "sphinx.ext.napoleon", + "sphinx.ext.viewcode", +] +autoapi_dirs = ["../src"] + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This pattern also affects html_static_path and html_extra_path. +exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] + +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +# +html_theme = "sphinx_rtd_theme" diff --git a/docs/contributing.md b/docs/contributing.md new file mode 100755 index 0000000..435d357 --- /dev/null +++ b/docs/contributing.md @@ -0,0 +1,2 @@ +```{include} ../CONTRIBUTING.md +``` \ No newline at end of file diff --git a/docs/example.ipynb b/docs/example.ipynb new file mode 100644 index 0000000..318b67e --- /dev/null +++ b/docs/example.ipynb @@ -0,0 +1,45 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "source": [ + "# Example usage\n", + "\n", + "To use `provenaclient` in a project:" + ], + "metadata": {} + }, + { + "cell_type": "code", + "execution_count": null, + "source": [ + "import provenaclient\n", + "\n", + "print(provenaclient.__version__)" + ], + "outputs": [], + "metadata": {} + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.5" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} \ No newline at end of file diff --git a/docs/index.md b/docs/index.md new file mode 100755 index 0000000..6fcdc0e --- /dev/null +++ b/docs/index.md @@ -0,0 +1,13 @@ +```{include} ../README.md +``` + +```{toctree} +:maxdepth: 1 +:hidden: + +example.ipynb +changelog.md +contributing.md +conduct.md +autoapi/index +``` \ No newline at end of file diff --git a/docs/make.bat b/docs/make.bat new file mode 100755 index 0000000..5f7888b --- /dev/null +++ b/docs/make.bat @@ -0,0 +1,36 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=python -msphinx +) +set SOURCEDIR=. +set BUILDDIR=_build +set SPHINXPROJ=provenaclient + +if "%1" == "" goto help + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The Sphinx module was not found. Make sure you have Sphinx installed, + echo.then set the SPHINXBUILD environment variable to point to the full + echo.path of the 'sphinx-build' executable. Alternatively you may add the + echo.Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.http://sphinx-doc.org/ + exit /b 1 +) + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% + +:end +popd diff --git a/docs/requirements.txt b/docs/requirements.txt new file mode 100644 index 0000000..7b5bd2a --- /dev/null +++ b/docs/requirements.txt @@ -0,0 +1,3 @@ +myst-nb +sphinx-autoapi +sphinx-rtd-theme \ No newline at end of file diff --git a/mypy.ini b/mypy.ini new file mode 100644 index 0000000..37371b8 --- /dev/null +++ b/mypy.ini @@ -0,0 +1,13 @@ +[mypy] +exclude = (?x)( + ^\.venv.* + | .*__pycache__.* + | dist.* + | .*build.* + | .*pytest_cache.* + | .*docs.* + ) + +disallow_untyped_defs = True +disallow_incomplete_defs = True +allow_redefinition = True \ No newline at end of file diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..1cd6690 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(>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.9" +content-hash = "2109bf269fba741dcd88ce4e509d31f3404bb6d1b515507f5c4a6e1fb32733e5" diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..71ffd7b --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,38 @@ +[tool.poetry] +name = "provenaclient" +version = "0.1.0" +description = "A client library for interfacing with a Provena instance." +authors = ["RRAP "] +license = "None" +readme = "README.md" + +[tool.poetry.dependencies] +python = "^3.9" + +[tool.poetry.dev-dependencies] +mypy = "^1.9.0" +pytest = "^8.1.1" +python-semantic-release = "^9.4.0" +pytest-cov = "^5.0.0" +myst-nb = "^1.0.0" +sphinx-autoapi = "^3.0.0" +sphinx-rtd-theme = "^2.0.0" + +[tool.semantic_release] +version_variable = [ + "src/provenaclient/__init__.py:__version__", + "pyproject.toml:version" +] # version location +branch = "main" # branch to make releases of +changelog_file = "CHANGELOG.md" # changelog file +build_command = "poetry build" +dist_path = "dist/" +upload_to_release = true +upload_to_pypi = false +remove_dist = false +patch_without_tag = true + + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/src/provenaclient/__init__.py b/src/provenaclient/__init__.py new file mode 100644 index 0000000..53c92d4 --- /dev/null +++ b/src/provenaclient/__init__.py @@ -0,0 +1,3 @@ +# read version from installed package +from importlib.metadata import version +__version__ = version("provenaclient") \ No newline at end of file diff --git a/src/provenaclient/main.py b/src/provenaclient/main.py new file mode 100644 index 0000000..8a2641e --- /dev/null +++ b/src/provenaclient/main.py @@ -0,0 +1,14 @@ +from provenaclient.provena_client import Auth, Client, Settings + +settings = Settings( + domain = "mds.gbrrestoration.org" +) + +auth = Auth( + settings = settings +) + +client = Client( + auth = auth, + settings = settings +) \ No newline at end of file diff --git a/src/provenaclient/provena_client.py b/src/provenaclient/provena_client.py new file mode 100644 index 0000000..89ac0b6 --- /dev/null +++ b/src/provenaclient/provena_client.py @@ -0,0 +1,15 @@ +from dataclasses import dataclass + +@dataclass +class Settings: + domain: str + +class Auth: + def __init__(self, settings: Settings): + self.settings = settings + +class Client: + def __init__(self, auth: Auth, settings: Settings): + self.auth = auth + self.settings = settings + diff --git a/tests/test_provenaclient.py b/tests/test_provenaclient.py new file mode 100644 index 0000000..720e364 --- /dev/null +++ b/tests/test_provenaclient.py @@ -0,0 +1,6 @@ +from provenaclient import provena_client +import pytest + +def test_dummy() -> None: + # Setting up a dummy test that always passes + assert True \ No newline at end of file