Clicking on a colored line on the output graph provides the complete FT spectrum for the sequence fragment defined by the line (the fragment may include closely neighbored lines as well). Alternatively, an arbitrary sequence range may be given (in the boxes under the output graph) in order to get a FT spectrum of this - particular sequence fragment. Download
+ particular sequence fragment. DownloadREPWin compares a protein sequence with itself within a sliding window of choosable length W. For each window starting position i and periodicity p it calculates
@@ -26,12 +26,12 @@ export default { dividing through the standard deviation of S(i,p) for nonperiodic sequences. The final score value for each residue number i and periodicity p is the maximum over all windows containing residue i.Clicking on a colored line on the output graph displays the corresponding alignment that shows the internal - homology. Download
+ homology. DownloadCOILS is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that the sequence will adopt a - coiled-coil conformation. COILS is described in Lupas, Science 252: 1162-1164 (1991) and Lupas, Meth. Enzymology 266: 513-525 (1996). It is based on a prediction protocol proposed by Parry, Biosci. Rep. 2: 1017-1024 (1982). You can also download the software.
+ coiled-coil conformation. COILS is described in Lupas, Science 252: 1162-1164 (1991) and Lupas, Meth. Enzymology 266: 513-525 (1996). It is based on a prediction protocol proposed by Parry, Biosci. Rep. 2: 1017-1024 (1982). You can also download the software.PSIPRED predicts the secondary structure as described in Jones, J.Mol.Biol. 292:195-202 (1999).
`, parameters: [