NAMESPACE

# Generated by roxygen2: do not edit by hand

export(Cdsw)
export(annotateAHO)
export(annotatePeptides)
export(computeFDR)
export(computeFDRwithID)
export(createDecoyDB)
export(create_fgcz_fasta_db)
export(greedyRes2Matrix)
export(greedy_parsimony)
export(loadContaminantsFGCZ2022)
export(loadContaminantsFasta2019)
export(loadContaminantsFasta2021)
export(load_special_prot_2024)
export(load_universal_contaminants_2024)
export(makeID)
export(makeIDUnip)
export(make_fasta_summary)
export(plotFDR)
export(predictScoreFDR)
export(prepareMatrix)
export(readPeptideFasta)
export(readjustWindows)
export(removeSignalPeptide)
export(reverseSeq)
export(writeFasta)
exportClasses(Cdsw)
import(AhoCorasickTrie)
import(Matrix)
import(methods)
import(seqinr)
import(stringr)
importFrom(docopt,docopt)
importFrom(methods,new)
importFrom(purrr,map2_df)
importFrom(purrr,map_df)
importFrom(readr,read_tsv)
importFrom(rlang,":=")