DESCRIPTION

Package: prolfquabenchmark
Type: Package
Title: Benchmarking MSstats, proDA, msqrob and prolfqua
Version: 0.3.3
Authors@R: c(person("Witold", "Wolski",
        email = c("wew@fgcz.ethz.ch", "wewolski@gmail.com"),
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-6468-120X")))
Description: We benchmark MSstats, proDA, msqrob and proflqua packages, using the IonStar and the CPTAC datasets.
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/wolski/proLFQuaBenchmark
BugReports: https://github.com/wolski/proLFQuaBenchmark/issues
LazyData: true
Imports:
    bookdown,
    BiocStyle,
    conflicted,
    dplyr,
    ggplot2,
    ggpubr,
    gridExtra,
    knitr,
    kableExtra,
    MSstats,
    msdata,
    msqrob2,
    prolfqua,
    prolfquadata,
    proDA,
    purrr,
    readxl,
    R6,
    SummarizedExperiment,
    tibble
RoxygenNote: 7.3.1
Roxygen: list(r6 = TRUE)
Depends: 
    R (>= 4.1)
biocViews: MassSpectrometry, Proteomics, Metabolomics, ExperimentHubSoftware