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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(AnalyseStableModels_LOO)
export(LPO_best_models)
export(analyzeImportanceFeatures)
export(analyzeImportanceFeaturesFBM)
export(analyzePopulationFeatures)
export(bestModelFeatureStability)
export(bestModelStability)
export(cleanPopulation)
export(computeCardEnrichment)
export(computeCoeffSVMLin)
export(computeEffectSizes)
export(computeFeatureMetrics)
export(computeIntercept)
export(create.folds)
export(crossing)
export(digest)
export(digestModelCollection)
export(disectModel)
export(estimateFeatureImportance)
export(evaluateAccuracy)
export(evaluateFeatureImportanceInPopulation)
export(evaluateModel)
export(evaluateModelRegression)
export(evaluatePopulation)
export(evaluatePrevalence)
export(evolve)
export(filterFeaturesByPrevalence)
export(filterNoSignal)
export(filterfeaturesK)
export(fit)
export(generator_metal)
export(getFeaturePrevalence)
export(getGraph)
export(getImportanceFeaturesFBMobjects)
export(getMaxMinPrevalenceModel)
export(getModelScore)
export(getNBestModels)
export(getSign)
export(individual)
export(isClf)
export(isExperiment)
export(isLearnerSota)
export(isModel)
export(isModelBTR)
export(isModelCollection)
export(isModelSota)
export(isModelSotaGLMNET)
export(isModelSotaRF)
export(isModelSotaSVM)
export(isModelTerda)
export(isPopulation)
export(listOfDenseVecToListOfModels)
export(listOfModels2ModelCollection)
export(listOfModelsToDenseCoefMatrix)
export(listOfModelsToListOfDenseVec)
export(listOfModelsToListOfSparseVec)
export(listOfSparseVecToListOfModels)
export(loadPopulation)
export(loadResults)
export(makeFeatureAnnot)
export(makeFeatureModelPrevalenceNetworkCooccur)
export(makeFeatureModelPrevalenceNetworkMiic)
export(mergeMeltBestScoreCV)
export(mergeMeltImportanceCV)
export(mergeMeltScoreCV)
export(mergeMeltScoreEmpirical)
export(mergeResults)
export(metal)
export(modelCollectionToPopulation)
export(modelToDenseVec)
export(multiplot)
export(mutate)
export(myAssertNotNullNorNa)
export(normModelCoeffs)
export(plotAUC)
export(plotAUCg)
export(plotAbundanceByClass)
export(plotComparativeBestCV)
export(plotComparativeCV)
export(plotComparativeEmpiricalScore)
export(plotComparativeResults)
export(plotComparativeResultsBest)
export(plotFeatureModelCoeffs)
export(plotImportanceFeaturesFBMobjects)
export(plotMGSQuality)
export(plotModel)
export(plotModelScore)
export(plotPopulation)
export(plotPrevalence)
export(population)
export(populationGet_X)
export(populationSet_X)
export(populationToDataFrame)
export(printClassifier)
export(printExperiment)
export(printModel)
export(printModelCollection)
export(printPopulation)
export(printy)
export(quartileDispersion)
export(runClassifier)
export(runCrossval)
export(savePopulation)
export(saveResults)
export(scoreRatio)
export(selectBestPopulation)
export(sim_inter)
export(sim_intra)
export(sortPopulation)
export(sota.glmnet)
export(sota.rf)
export(sota.svm)
export(terBeam)
export(terda)
export(terga1)
export(terga2)
export(updateObjectIndex)
import(RColorBrewer)
import(caTools)
import(doRNG)
import(doSNOW)
import(dplyr)
import(effsize)
import(foreach)
import(ggplot2)
import(pROC)
import(reshape2)
import(snow)
import(yaml)
importFrom(glmnet,glmnet)
importFrom(gridExtra,grid.arrange)
importFrom(gtools,combinations)
importFrom(kernlab,ksvm)
importFrom(kernlab,predict)
importFrom(pROC,roc)
importFrom(randomForest,randomForest)
importFrom(reshape2,melt)
importFrom(viridis,viridis_pal)