Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Correlation between z scores is NaN #8

Open
nenduru1 opened this issue Nov 15, 2021 · 0 comments
Open

Correlation between z scores is NaN #8

nenduru1 opened this issue Nov 15, 2021 · 0 comments

Comments

@nenduru1
Copy link

Hello,

thank you for sharing these resources.

I have 2 queries while running the FDR analysis
a) I am getting the correlation between two traits as NaN. does this indicate large sample overlap or any issue with the data? attached the log file.
b) I am trying to change the color in Manhattan plot and tried to tweek the below cmd, but I still get the default red color.
cfg.declare(CFG_MANCOLORLIST_MAT, ...
'[ 1 0.5 0 ; 0 0.75 0.75; 0 0.5 0; 0.75 0 0.75; 0 0 1; 0 1 0;1 0 0; 0 1 1]');

please advice

thank you

Height_BIP_conjfdr_0.05.log

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant