README.md

Singularity-Images

Singularity-based setup of cellprofiler to compute image data on compute servers. These instructions are derived with the reference from singularity-tutorials by David Godlove and CellProfiler-Wiki.

Contents

• Run CellProfiler 4 in singularity container
  • Build singularity image
  • Build sigularity sandbox
  • Running singularity container
  • Running cellprofiler as native app