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DESCRIPTION
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DESCRIPTION
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Package: metapr2
Title: Eukaryotic 18S rRNA metabarcode database
Version: 2.1.1
Authors@R:
person(given = "Daniel",
family = "Vaulot",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-0717-5685"))
Description: Provides an interface to the metaPR2 database (current version = 1.0) which contains eukaryotic 18S rRNA metabarcodes.
Many options for selecting samples are provided.
Data can be displayed as maps, barplots, treemaps.
Data can be searched and downloaded.
See https://pr2-database.org for more information.
License: MIT
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Imports:
Biostrings,
blaster (>= 1.0.4),
bslib,
dplyr,
DT,
forcats,
ggforce,
ggplot2,
leaflet,
leaflet.minicharts,
lubridate,
markdown,
patchwork,
phyloseq,
pkgload,
plotly,
pryr,
purrr,
qs,
rio,
scrypt,
shiny,
shinycssloaders,
shinydisconnect,
shinylogs,
shinymanager,
shinyvalidate,
shinyWidgets,
stringr,
tidyr,
treemapify,
viridis
Depends:
R (>= 2.10)
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3
Remotes:
manutamminen/blaster