Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Plot density issue for >1 gene and the projection output #26

Open
ganpha opened this issue May 30, 2024 · 0 comments
Open

Plot density issue for >1 gene and the projection output #26

ganpha opened this issue May 30, 2024 · 0 comments

Comments

@ganpha
Copy link

ganpha commented May 30, 2024

Hello,
I'm using Seurat v5 with an RDS object obtained by using the BBKNN integration protocol. The Plot_density function does not generate a plot for more than one gene, and for a single gene, it produces a t-SNE projection instead of a UMAP projection. Please advise on how to resolve this issue? Thank you for any help!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant