From d8d2da821331a3a748b1964b6fbb221907c85ba1 Mon Sep 17 00:00:00 2001
From: Stephan Schiffels <stephan_schiffels@mac.com>
Date: Fri, 25 Oct 2024 10:32:44 +0200
Subject: [PATCH] fixed some minors after merging master

---
 src/Poseidon/CLI/Forge.hs | 2 +-
 src/Poseidon/Janno.hs     | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/Poseidon/CLI/Forge.hs b/src/Poseidon/CLI/Forge.hs
index 72d0bb2e..2565ec94 100644
--- a/src/Poseidon/CLI/Forge.hs
+++ b/src/Poseidon/CLI/Forge.hs
@@ -20,7 +20,7 @@ import           Poseidon.GenotypeData       (GenoDataSource (..),
                                               printSNPCopyProgress,
                                               selectIndices, snpSetMergeList)
 import           Poseidon.Janno              (JannoRow (..), ListColumn (..),
-                                              JannoRows (..), getMaybeJannoList,
+                                              JannoRows (..), getMaybeListColumn,
                                               jannoRows2EigenstratIndEntries,
                                               writeJannoFile)
 import           Poseidon.Package            (PackageReadOptions (..),
diff --git a/src/Poseidon/Janno.hs b/src/Poseidon/Janno.hs
index 3e611ac5..8f6057fd 100644
--- a/src/Poseidon/Janno.hs
+++ b/src/Poseidon/Janno.hs
@@ -655,4 +655,5 @@ deriveGeneric ''JannoRow
 jannoRows2EigenstratIndEntries :: JannoRows -> [EigenstratIndEntry]
 jannoRows2EigenstratIndEntries (JannoRows jannoRows) = do -- list monad
     jannoRow <- jannoRows -- looping over jannoRows
-    return $ EigenstratIndEntry (jPoseidonID jannoRow) (sfSex (jGeneticSex jannoRow)) (head . getJannoList $ jGroupName jannoRow)
+    let GroupName gText = head . getListColumn . jGroupName $ jannoRow
+    return $ EigenstratIndEntry (jPoseidonID jannoRow) (sfSex (jGeneticSex jannoRow)) (T.unpack gText)