From 98d499e7538202cbaf54436d880f03c2a951325e Mon Sep 17 00:00:00 2001 From: Clemens Schmid Date: Wed, 6 Nov 2024 13:13:10 +0100 Subject: [PATCH] added a warning about undocumented changes to the changelog of the v1.5.7.0 release --- CHANGELOGRELEASE.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/CHANGELOGRELEASE.md b/CHANGELOGRELEASE.md index cc4c1343..23525a2f 100644 --- a/CHANGELOGRELEASE.md +++ b/CHANGELOGRELEASE.md @@ -8,6 +8,11 @@ This patch release fixes three minor bugs, some of which were accidentally intro ### V 1.5.7.0 +> [!WARNING] +> On 2024/11/06 we realized that this release includes a breaking change that is not documented below. +> The command line input interface for unpackaged genotype data was modified from previously `--inFormat EIGENSTRAT|PLINK + --genoFile + --snpFile + --indFile` to now `--genoFile + --snpFile + --indFile` and `--bedFile + --bimFile + --famFile`. So the format selection with the `--inFormat` argument was removed and replaced with separate file selectors for EIGENSTRAT and PLINK data. +> This affects all `trident` subcommands that allow reading of unpackaged genotype data, namely `init`, `forge`, `genoconvert` and `validate`. + This release further improves `.janno` parsing error messages and adds reading support for gzipped PLINK (`.bed` and `.bim`) and EIGENSTRAT (`.geno` and `.snp`) files. We also added (experimental) support for reading VCF files. #### Better .janno error messages