diff --git a/images.toml b/images.toml index 5360fda..e354471 100644 --- a/images.toml +++ b/images.toml @@ -36,3 +36,4 @@ gangstr = '2.5.0' hipstr = 'v0.6.2' bgt = 'v1.0' basespace = '1.5.3' +savvy-cnv = 'v1.0' diff --git a/images/savvy-cnv/Dockerfile b/images/savvy-cnv/Dockerfile new file mode 100644 index 0000000..befb8eb --- /dev/null +++ b/images/savvy-cnv/Dockerfile @@ -0,0 +1,19 @@ +FROM broadinstitute/gatk:latest + +ARG VERSION=${VERSION} + +#COPY README* *build.d /build.d/ +#RUN bash -c 'for i in $(ls /build.d/*.sh 2>/dev/null | sort) ; do source $i ; done' + +RUN apt-get update + +RUN apt-get install -y git + +WORKDIR /home/gradle/ + +RUN git clone https://github.com/rdemolgen/SavvySuite.git \ +&& cd SavvySuite && javac *.java + +ENV CLASSPATH="/home/gradle/gatk-4.2.6.1/gatk-package-4.2.6.1-local.jar:/home/gradle/SavvySuite:${CLASSPATH}" + +CMD []