MASSIVE renovation of the HTML report

What's Changed

• Bugfixes, and one fast report by @MattWellie in #453

Full Changelog: 6.1.1...6.1.2

Allow snRNA variants through to de novo checks

What's Changed

• Remove csq filter for de novo by @MattWellie in #452
• Fixes a little bug in the hyperlinks

Full Changelog: 6.1.0...6.1.1

Multiple reports working

What's Changed

• Trust SV qualities by @MattWellie in #450
• How about... more reports by @MattWellie in #448

Full Changelog: 6.0.0...6.1.0

Generate and use Phenopackets

What's Changed

• Create and use a GA4GH-compliant Phenopackets object by @MattWellie in #446

Full Changelog: 5.5.4...6.0.0

Updated report format/content

What's Changed

• Report polishing by @MattWellie in #441 & #440
• Non functional updates by @MattWellie in #443
• Update report finder by @MattWellie in #444

Full Changelog: 5.5.1...5.5.4

Correction to Forced Matches

5.5.2

Bump version: 5.5.1 → 5.5.2

TimeDelta, HTTPX, Backoff

What's Changed

• Add httpx redirect by @MattWellie in #438

#438 included a fix for HTTPX requests - PanelApp's Django API requires a trailing slash, so we need to permit redirects

It also includes a fix for determining when a gene is new. This was incorrectly calculated due to a quirk of dateutil.relativedelta

Also includes a manual rewrite of the request backoff retry, important when running multiple PanelApp queries in parallel

Full Changelog: 5.5.0...5.5.1

New genes found from PanelApp Activities

What's Changed

• Remove cat2, change notion of new by @MattWellie in #437

Full Changelog: 5.4.0...5.5.0

Adds PseudoDominant Female MOI, Unbounded HPO search

What's Changed

• Feature 433: Remove HPO tree limit by @MattWellie in #434
• Permit Het-Female-X variants in Biallelic disease by @MattWellie in #432

Full Changelog: 5.3.1...5.4.0

DeNovo/Cat4 candidate fix

This release also contains a working version of the VCF -> MT process, a starting point for detaching Talos from the seqr_loader input format