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_pkgdown.yml
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_pkgdown.yml
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url: https://adibender.github.io/pammtools
template:
params:
ganalytics: UA-44545040-3
docsearch:
api_key: c3726dcbf089f0b26f496305ed030c22
index_name: pammtools
reference:
- title: "Transform data to Piece-wise Exponential Data (PED) format"
desc: "Functions to transform data sets in different formats to PED format,
suitable to be fit as PAMMs."
contents:
- as_ped
- title: "PED helper functions"
desc: "Functions that help extract (interval-specific) summary information
from PED and create newdata, e.g., for prediction and plotting."
contents:
- int_info
- ped_info
- make_newdata
- title: "Extract information from PAMMs"
desc: "Functions that help extract information from fitted model objects,
e.g., smooth effects for plotting"
contents:
- tidy_fixed
- tidy_smooth
- tidy_smooth2d
- tidy_re
- get_cumu_coef
- title: "Augment functions"
desc: "Functions that augment a data set by different quantaties like the
hazard rate."
contents:
- add_term
- add_hazard
- add_surv_prob
- title: "Convenience functions for visualization of model outputs."
desc: "Functions that facilitate effect plots (smooth effects, etc.)"
contents:
- gg_fixed
- gg_smooth
- gg_tensor
- gg_re
- gg_slice
- gg_partial
- gg_partial_ll
- gg_laglead
- gg_cumu_eff
- title: "Data sets"
desc: "Data sets contained in **`pammtools`**"
contents:
- tumor
- simdf_elra
- title: "Utilities"
desc: "Utility functions"
contents:
- seq_range
- sim_pexp
- get_laglead
articles:
- title: "Articles"
desc: "Several articles/vignettes that describe the usage of PAMMs"
contents:
- data-transformation
- baseline
- basics
- strata
- splines
- tveffects
- frailty
- tdcovar
- cumulative-effects
- convenience
- smj-tutorial
navbar:
type: default
left:
- text: Reference
href: reference/index.html
- text: Articles
menu:
- text: Data transformation
href: articles/data-transformation.html
- text: Estimating the baseline hazard
href: articles/baseline.html
- text: Basic modeling
href: articles/basics.html
- text: Workflow and convenience functions
href: articles/convenience.html
- text: Stratified models
href: articles/strata.html
- text: Non-linear effects (penalized splines)
href: articles/splines.html
- text: Time-varying effects (TVEs)
href: articles/tveffects.html
- text: Frailties (random effects)
href: articles/frailty.html
- text: Time-dependent covariates (TDCs)
href: articles/tdcovar.html
- text: Cumulative effects/Exposure-Lag-Response Associations
href: articles/cumulative-effects.html
- text: 'Paper: A generalized additive model approach to time-to-event analysis'
href: articles/smj-tutorial.html
- text: News
href: news/index.html
right:
- icon: fa-github fa-lg
href: https://github.com/adibender/pammtools
development:
mode: auto