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Notices.txt
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Component Licenses:
acepack 1.4.1 : (MIT License AND File License)
ape 5.2 : GNU General Public License v2.0 or later
assertthat 0.2.0 : GNU General Public License v3.0 only
backports 1.1.3 : GNU General Public License v2.0 only
base64enc 0.1-3 : (GNU General Public License v2.0 only OR GNU General Public License v3.0 only)
beeswarm 0.2.3 : Artistic License 2.0
BH 1.66.0-1 : Boost Software License 1.0
bindr 0.1.1 : (MIT License AND File License)
bindrcpp 0.2.2 : (MIT License AND File License)
bit 1.1-14 : GNU General Public License v2.0 only
bit64 0.9-7 : GNU General Public License v2.0 only
bitops 1.0-6 : GNU General Public License v2.0 or later
blob 1.1.1 : GNU General Public License v3.0 only
callr 3.1.0 : (MIT License AND File License)
caTools 1.17.1.1 : GNU General Public License v3.0 only
cellranger 1.1.0 : (MIT License AND File License)
checkmate 1.8.5 : (BSD 3-clause "New" or "Revised" License AND File License)
cli 1.0.1 : (MIT License AND File License)
cluster 2.0.7-1 : GNU General Public License v2.0 or later
codetools 0.2-15 : GNU General Public License v3.0 or later
colorspace 1.3-2 : (BSD 3-clause "New" or "Revised" License AND File License)
corpcor 1.6.9 : GNU General Public License v3.0 or later
corrplot 0.84 : GNU General Public License v3.0 or later
cowplot 0.9.3 : GNU General Public License v2.0 only
CRAN foreach 1.4.4 : Apache License 2.0
crayon 1.3.4 : (MIT License AND File License)
curl 3.2 : (MIT License AND File License)
data.table 1.11.8 : (File License OR Mozilla Public License 2.0)
DBI 1.0.0 : GNU Library General Public License v2 or later
DEoptimR 1.0-8 : GNU General Public License v2.0 or later
desc 1.2.0 : (MIT License AND File License)
devtools 2.0.1 : GNU General Public License v2.0 or later
digest 0.6.18 : GNU General Public License v2.0 or later
dnet 1.1.4 : GNU General Public License v2.0 only
doParallel 1.0.14 : GNU General Public License v2.0 only
dplyr 0.7.8 : (MIT License AND File License)
dynamicTreeCut 1.63-1 : GNU General Public License v2.0 or later
egg 0.4.2 : GNU General Public License v3.0 only
ellipse 0.4.1 : GNU General Public License v2.0 or later
evaluate 0.12 : (MIT License AND File License)
fastcluster 1.1.25 : (GNU General Public License v2.0 only OR BSD 2-clause FreeBSD License OR File License)
fastmatch 1.1-0 : GNU General Public License v2.0 only
fit.models 0.5-14 : GNU General Public License v3.0 or later
foreign 0.8-71 : GNU General Public License v2.0 or later
Formula 1.2-3 : (GNU General Public License v2.0 only OR GNU General Public License v3.0 only)
fs 1.2.6 : GNU General Public License v3.0 only
GGally 1.4.0 : GNU General Public License v2.0 or later
ggbeeswarm 0.6.0 : GNU General Public License v2.0 or later
ggplot2 3.1.0 : (GNU General Public License v2.0 only OR File License)
ggpubr 0.2 : GNU General Public License v2.0 only
ggrepel 0.8.0 : (File License OR GNU General Public License v3.0 only)
glue 1.3.0 : (MIT License AND File License)
gplots 3.0.1 : GNU General Public License v2.0 only
gridExtra 2.3 : GNU General Public License v2.0 or later
gtable 0.2.0 : GNU General Public License v2.0 only
gtools 3.8.1 : GNU General Public License v2.0 only
h5py 2.9.0 : BSD 3-clause "New" or "Revised" License
hexbin 1.27.2 : GNU General Public License v2.0 only
highr 0.7 : GNU General Public License v3.0 or later
Hmisc 4.1-1 : GNU General Public License v2.0 or later
hms 0.4.2 : GNU General Public License v3.0 only
htmlTable 1.12 : GNU General Public License v3.0 or later
htmltools 0.3.6 : GNU General Public License v2.0 or later
htmlwidgets 1.3 : (MIT License AND File License)
httr 1.4.0 : (MIT License AND File License)
igraph library 1.2.2 : GNU General Public License v2.0 or later
iterators 1.0.10 : Apache License 2.0
JavaCPP Presets for NumPy 1.16.2-1.5 : (Apache License 2.0 AND GNU General Public License v2.0 w/Classpath exception AND GNU General Public License v3.0 or later)
joblib 0.13.1 : BSD 3-clause "New" or "Revised" License
jsonlite 1.6 : (MIT License AND File License)
KernSmooth 2.23-15 : KernSmooth License
knitr 1.21 : GNU General Public License v3.0 or later
labeling 0.3 : MIT License
lattice 0.20-38 : GNU General Public License v2.0 or later
latticeExtra 0.6-28 : GNU General Public License v2.0 or later
lazyeval 0.2.1 : GNU General Public License v3.0 only
magrittr 1.5 : (MIT License AND File License)
MASS 7.3-51.1 : (GNU General Public License v2.0 only OR GNU General Public License v3.0 only)
Matrix 1.2-15 : (GNU General Public License v2.0 only OR GNU General Public License v3.0 only)
matrixStats 0.54.0 : Artistic License 2.0
memoise 1.1.0 : (MIT License AND File License)
munsell 0.5.0 : (MIT License AND File License)
mvtnorm 1.0-8 : GNU General Public License v2.0 only
nlme 3.1-137 : (GNU General Public License v2.0 or later)
nnet 7.3-12 : (GNU General Public License v2.0 only OR GNU General Public License v3.0 only)
NumPy 1.14.0 : BSD 3-clause "New" or "Revised" License
numpy-base 1.16.0 : NumPy License
numpy-base 1.16.2 : NumPy License
openxlsx 4.1.0 : (MIT License AND File License)
otj-pg-embedded 0.13.0 : Apache License 2.0
pandas 0.24.1 : BSD 3-clause "New" or "Revised" License
pcaPP 1.9-73 : GNU General Public License v3.0 or later
pillar 1.3.1 : GNU General Public License v3.0 only
pip 19.1.1 : MIT License
pkgbuild 1.0.2 : GNU General Public License v3.0 only
pkgconfig 2.0.2 : (MIT License AND File License)
pkgload 1.0.2 : GNU General Public License v3.0 only
plotrix 3.7-4 : GNU General Public License v2.0 or later
plyr 1.8.4 : (MIT License AND File License)
prettyunits 1.0.2 : (MIT License AND File License)
processx 3.2.1 : (MIT License AND File License)
ps 1.2.1 : (BSD 3-clause "New" or "Revised" License AND File License)
purrr 0.2.5 : (File License OR GNU General Public License v3.0 only)
py-numpy-dev 1.16.2 : BSD 3-clause "New" or "Revised" License
py-numpy-dev 1.16.4 : BSD 3-clause "New" or "Revised" License
python-dateutil 2.8.0 : BSD 3-clause "New" or "Revised" License
PyTZ - Python Time Zone Library 2018.9 : MIT License
PyTZ - Python Time Zone Library 2019.1 : MIT License
r-gdata 2.18.0 : GNU General Public License v2.0 only
R6 2.3.0 : (MIT License AND File License)
rARPACK 0.11-0 : (BSD 3-clause "New" or "Revised" License AND File License)
rcolorbrewer 1.1-2 : Apache License 2.0
Rcpp 1.0.0 : GNU General Public License v2.0 or later
RCurl 1.95-4.11 : BSD 3-clause "New" or "Revised" License
readr 1.3.0 : (GNU General Public License v2.0 or later OR File License)
readxl 1.1.0 : GNU General Public License v3.0 or later
relations 0.6-8 : GNU General Public License v2.0 only
remotes 2.0.2 : GNU General Public License v2.0 or later
reshape 0.8.8 : (MIT License AND File License)
reshape2 1.4.3 : (MIT License AND File License)
reticulate 1.10 : Apache License 2.0
rJava 0.9-10 : GNU General Public License v2.0 only
rjson 0.2.20 : GNU General Public License v2.0 only
rlang 0.3.0.1 : GNU General Public License v3.0 only
rmarkdown 1.11 : GNU General Public License v3.0 only
robust 0.4-18 : GNU General Public License v2.0 only
robustbase 0.93-3 : GNU General Public License v2.0 or later
rpart 4.1-13 : (GNU General Public License v2.0 only OR GNU General Public License v3.0 only)
rprojroot 1.3-2 : GNU General Public License v3.0 only
rrcov 1.4-7 : GNU General Public License v2.0 or later
RSpectra 0.13-1 : Mozilla Public License 2.0
RSQLite 2.1.1 : GNU Library General Public License v2 or later
rstudioapi 0.8 : (MIT License AND File License)
scales 1.0.0 : (MIT License AND File License)
scikit-learn 0.21.1 : BSD 3-clause "New" or "Revised" License
SciPy: Scientific Library for Python 1.2.1 : BSD 3-clause "New" or "Revised" License
SciPy: Scientific Library for Python 1.3.0rc2 : BSD 3-clause "New" or "Revised" License
sessioninfo 1.1.1 : GNU General Public License v2.0 only
sets 1.0-18 : GNU General Public License v2.0 only
setuptools 40.7.3 : MIT License
slam 0.1-43 : GNU General Public License v2.0 only
SparseM 1.77 : GNU General Public License v2.0 or later
stringi 1.2.4 : File License
stringr 1.3.1 : (GNU General Public License v2.0 only OR File License)
survival 2.43-3 : GNU Library General Public License v2 or later
test-catkin-virtualenv-py3 0.1.3 : GNU General Public License v3.0 or later
testthat 2.0.1 : (MIT License AND File License)
tibble 1.4.2 : (MIT License AND File License)
tidyr 0.8.2 : (MIT License AND File License)
tidyselect 0.2.5 : GNU General Public License v3.0 only
usethis 1.4.0 : GNU General Public License v3.0 only
vipor 0.4.5 : GNU General Public License v2.0 or later
vis.js 4.20.1 : (Apache License 2.0 OR MIT License)
visNetwork 2.0.5 : (MIT License AND File License)
WGCNA 1.66 : GNU General Public License v2.0 or later
whisker 0.3-2 : GNU General Public License v3.0 only
withr 2.1.2 : GNU General Public License v2.0 or later
xfun 0.4 : (MIT License AND File License)
xlsx 0.6.1 : GNU General Public License v3.0 only
xlsxjars 0.6.1 : GNU General Public License v3.0 only
yaml 2.2.0 : (BSD 3-clause "New" or "Revised" License AND File License)
zip 1.0.0 : Creative Commons Zero v1.0 Universal
Licenses:
Apache License 2.0
(CRAN foreach 1.4.4, iterators 1.0.10, JavaCPP Presets for NumPy 1.16.2-1.5, otj-pg-embedded 0.13.0, rcolorbrewer 1.1-2, reticulate 1.10, vis.js 4.20.1)
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a) You must cause the modified files to carry prominent notices stating
that you changed the files and the date of any change.
b) You must cause any work that you distribute or publish, that in whole or
in part contains or is derived from the Program or any part thereof, to be
licensed as a whole at no charge to all third parties under the terms of
this License.
c) If the modified program normally reads commands interactively when run,
you must cause it, when started running for such interactive use in the
most ordinary way, to print or display an announcement including an
appropriate copyright notice and a notice that there is no warranty (or
else, saying that you provide a warranty) and that users may redistribute
the program under these conditions, and telling the user how to view a copy
of this License. (Exception: if the Program itself is interactive but does
not normally print such an announcement, your work based on the Program is
not required to print an announcement.)
These requirements apply to the modified work as a whole. If identifiable
sections of that work are not derived from the Program, and can be reasonably
considered independent and separate works in themselves, then this License, and
its terms, do not apply to those sections when you distribute them as separate
works. But when you distribute the same sections as part of a whole which is a
work based on the Program, the distribution of the whole must be on the terms of
this License, whose permissions for other licensees extend to the entire whole,
and thus to each and every part regardless of who wrote it.
Thus, it is not the intent of this section to claim rights or contest your rights
to work written entirely by you; rather, the intent is to exercise the right to
control the distribution of derivative or collective works based on the Program.
In addition, mere aggregation of another work not based on the Program with the
Program (or with a work based on the Program) on a volume of a storage or
distribution medium does not bring the other work under the scope of this
License.
3. You may copy and distribute the Program (or a work based on it, under Section