From a456a5be02eee348ce303e400ec62992aa0516dd Mon Sep 17 00:00:00 2001
From: Zelos Zhu <zelos.zhu@atorusresearch.com>
Date: Tue, 10 Sep 2024 15:39:34 +0000
Subject: [PATCH] use :: convention

---
 R/derive_params_growth_age.R       | 4 ++--
 R/derive_params_growth_height.R    | 6 +++---
 data-raw/adsl_peds.R               | 2 +-
 inst/templates/ad_advs.R           | 4 ++--
 man/derive_params_growth_age.Rd    | 4 ++--
 man/derive_params_growth_height.Rd | 6 +++---
 vignettes/advs.Rmd                 | 4 ++--
 7 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/R/derive_params_growth_age.R b/R/derive_params_growth_age.R
index 73174fa..c56b9b0 100644
--- a/R/derive_params_growth_age.R
+++ b/R/derive_params_growth_age.R
@@ -118,9 +118,9 @@
 #' library(admiral, warn.conflicts = FALSE)
 #' library(pharmaversesdtm, warn.conflicts = FALSE)
 #'
-#' advs <- dm_peds %>%
+#' advs <- pharmaversesdtm::dm_peds %>%
 #'   select(USUBJID, BRTHDTC, SEX) %>%
-#'   right_join(., vs_peds, by = "USUBJID") %>%
+#'   right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") %>%
 #'   mutate(
 #'     VSDT = ymd(VSDTC),
 #'     BRTHDT = ymd(BRTHDTC)
diff --git a/R/derive_params_growth_height.R b/R/derive_params_growth_height.R
index a937ee0..bf3f7c4 100644
--- a/R/derive_params_growth_height.R
+++ b/R/derive_params_growth_height.R
@@ -118,9 +118,9 @@
 #'
 #' # derive weight for height/length only for those under 2 years old using WHO
 #' # weight for length reference file
-#' advs <- dm_peds %>%
+#' advs <- pharmaversesdtm::dm_peds %>%
 #'   select(USUBJID, BRTHDTC, SEX) %>%
-#'   right_join(., vs_peds, by = "USUBJID") %>%
+#'   right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") %>%
 #'   mutate(
 #'     VSDT = ymd(VSDTC),
 #'     BRTHDT = ymd(BRTHDTC)
@@ -133,7 +133,7 @@
 #'     out_unit = "days"
 #'   )
 #'
-#' heights <- vs_peds %>%
+#' heights <- pharmaverse::vs_peds %>%
 #'   filter(VSTESTCD == "HEIGHT") %>%
 #'   select(USUBJID, VSSTRESN, VSSTRESU, VSDTC) %>%
 #'   rename(
diff --git a/data-raw/adsl_peds.R b/data-raw/adsl_peds.R
index 8887a54..7300b74 100644
--- a/data-raw/adsl_peds.R
+++ b/data-raw/adsl_peds.R
@@ -11,7 +11,7 @@ library(stringr)
 # Create a basic ADSL for pediatrics ----
 
 # Read in input data ----
-dm_peds <- dm_peds
+dm_peds <- pharmaversesdtm::dm_peds
 ex <- ex
 
 # Derivations ----
diff --git a/inst/templates/ad_advs.R b/inst/templates/ad_advs.R
index cf34f31..17a2d45 100644
--- a/inst/templates/ad_advs.R
+++ b/inst/templates/ad_advs.R
@@ -181,8 +181,8 @@ who_wt_for_lgth <- who_wt_for_lgth_boys %>%
 # as needed and assign to the variables below.
 # For illustration purposes read in admiral test data
 
-vs_peds <- vs_peds
-data("adsl_peds")
+vs_peds <- pharmaversesdtm::vs_peds
+adsl_peds <- admiralpeds::adsl_peds
 
 vs <- vs_peds
 adsl <- adsl_peds %>% select(-DOMAIN)
diff --git a/man/derive_params_growth_age.Rd b/man/derive_params_growth_age.Rd
index 21544d0..b6a21e6 100644
--- a/man/derive_params_growth_age.Rd
+++ b/man/derive_params_growth_age.Rd
@@ -132,9 +132,9 @@ library(rlang, warn.conflicts = FALSE)
 library(admiral, warn.conflicts = FALSE)
 library(pharmaversesdtm, warn.conflicts = FALSE)
 
-advs <- dm_peds \%>\%
+advs <- pharmaversesdtm::dm_peds \%>\%
   select(USUBJID, BRTHDTC, SEX) \%>\%
-  right_join(., vs_peds, by = "USUBJID") \%>\%
+  right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") \%>\%
   mutate(
     VSDT = ymd(VSDTC),
     BRTHDT = ymd(BRTHDTC)
diff --git a/man/derive_params_growth_height.Rd b/man/derive_params_growth_height.Rd
index d383bd6..d66471c 100644
--- a/man/derive_params_growth_height.Rd
+++ b/man/derive_params_growth_height.Rd
@@ -131,9 +131,9 @@ library(pharmaversesdtm, warn.conflicts = FALSE)
 
 # derive weight for height/length only for those under 2 years old using WHO
 # weight for length reference file
-advs <- dm_peds \%>\%
+advs <- pharmaversesdtm::dm_peds \%>\%
   select(USUBJID, BRTHDTC, SEX) \%>\%
-  right_join(., vs_peds, by = "USUBJID") \%>\%
+  right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") \%>\%
   mutate(
     VSDT = ymd(VSDTC),
     BRTHDT = ymd(BRTHDTC)
@@ -146,7 +146,7 @@ advs <- dm_peds \%>\%
     out_unit = "days"
   )
 
-heights <- vs_peds \%>\%
+heights <- pharmaverse::vs_peds \%>\%
   filter(VSTESTCD == "HEIGHT") \%>\%
   select(USUBJID, VSSTRESN, VSSTRESU, VSDTC) \%>\%
   rename(
diff --git a/vignettes/advs.Rmd b/vignettes/advs.Rmd
index a748e30..9f8bbeb 100644
--- a/vignettes/advs.Rmd
+++ b/vignettes/advs.Rmd
@@ -232,8 +232,8 @@ include the pediatrics-specific parameters as needed - for example:
 | BMIPCTL   | BMI-for-age percentile | 10       | Subject Characteristic | 1          |
 
 ```{r echo=FALSE, message=FALSE}
-vs_peds <- vs_peds
-data("adsl_peds")
+vs_peds <- pharmaversesdtm::vs_peds
+adsl_peds <- admiralpeds::adsl_peds
 
 vs <- convert_blanks_to_na(vs_peds)
 adsl <- adsl_peds %>% select(-DOMAIN)