From 4969902492f153fb342c0ee6ee8751c29a583205 Mon Sep 17 00:00:00 2001
From: Zelos Zhu <zelos.zhu@atorusresearch.com>
Date: Fri, 23 Aug 2024 19:38:23 +0000
Subject: [PATCH] does this work?

---
 R/derive_params_growth_age.R       | 4 ++--
 R/derive_params_growth_height.R    | 6 +++---
 data-raw/adsl_peds.R               | 2 +-
 inst/templates/ad_advs.R           | 3 ++-
 man/derive_params_growth_age.Rd    | 4 ++--
 man/derive_params_growth_height.Rd | 6 +++---
 vignettes/advs.Rmd                 | 1 +
 7 files changed, 14 insertions(+), 12 deletions(-)

diff --git a/R/derive_params_growth_age.R b/R/derive_params_growth_age.R
index c56b9b0..73174fa 100644
--- a/R/derive_params_growth_age.R
+++ b/R/derive_params_growth_age.R
@@ -118,9 +118,9 @@
 #' library(admiral, warn.conflicts = FALSE)
 #' library(pharmaversesdtm, warn.conflicts = FALSE)
 #'
-#' advs <- pharmaversesdtm::dm_peds %>%
+#' advs <- dm_peds %>%
 #'   select(USUBJID, BRTHDTC, SEX) %>%
-#'   right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") %>%
+#'   right_join(., vs_peds, by = "USUBJID") %>%
 #'   mutate(
 #'     VSDT = ymd(VSDTC),
 #'     BRTHDT = ymd(BRTHDTC)
diff --git a/R/derive_params_growth_height.R b/R/derive_params_growth_height.R
index 89572ba..a937ee0 100644
--- a/R/derive_params_growth_height.R
+++ b/R/derive_params_growth_height.R
@@ -118,9 +118,9 @@
 #'
 #' # derive weight for height/length only for those under 2 years old using WHO
 #' # weight for length reference file
-#' advs <- pharmaversesdtm::dm_peds %>%
+#' advs <- dm_peds %>%
 #'   select(USUBJID, BRTHDTC, SEX) %>%
-#'   right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") %>%
+#'   right_join(., vs_peds, by = "USUBJID") %>%
 #'   mutate(
 #'     VSDT = ymd(VSDTC),
 #'     BRTHDT = ymd(BRTHDTC)
@@ -133,7 +133,7 @@
 #'     out_unit = "days"
 #'   )
 #'
-#' heights <- pharmaversesdtm::vs_peds %>%
+#' heights <- vs_peds %>%
 #'   filter(VSTESTCD == "HEIGHT") %>%
 #'   select(USUBJID, VSSTRESN, VSSTRESU, VSDTC) %>%
 #'   rename(
diff --git a/data-raw/adsl_peds.R b/data-raw/adsl_peds.R
index 7300b74..8887a54 100644
--- a/data-raw/adsl_peds.R
+++ b/data-raw/adsl_peds.R
@@ -11,7 +11,7 @@ library(stringr)
 # Create a basic ADSL for pediatrics ----
 
 # Read in input data ----
-dm_peds <- pharmaversesdtm::dm_peds
+dm_peds <- dm_peds
 ex <- ex
 
 # Derivations ----
diff --git a/inst/templates/ad_advs.R b/inst/templates/ad_advs.R
index ca4de25..0aae04a 100644
--- a/inst/templates/ad_advs.R
+++ b/inst/templates/ad_advs.R
@@ -10,6 +10,7 @@
 #        who_wt_for_lgth_boys, who_wt_for_lgth_girls
 
 library(admiral)
+library(pharamversesdtm)
 library(admiralpeds)
 library(dplyr)
 library(lubridate)
@@ -180,7 +181,7 @@ who_wt_for_lgth <- who_wt_for_lgth_boys %>%
 # as needed and assign to the variables below.
 # For illustration purposes read in admiral test data
 
-vs_peds <- pharmaversesdtm::vs_peds
+vs_peds <- vs_peds
 data("adsl_peds")
 
 vs <- vs_peds
diff --git a/man/derive_params_growth_age.Rd b/man/derive_params_growth_age.Rd
index b6a21e6..21544d0 100644
--- a/man/derive_params_growth_age.Rd
+++ b/man/derive_params_growth_age.Rd
@@ -132,9 +132,9 @@ library(rlang, warn.conflicts = FALSE)
 library(admiral, warn.conflicts = FALSE)
 library(pharmaversesdtm, warn.conflicts = FALSE)
 
-advs <- pharmaversesdtm::dm_peds \%>\%
+advs <- dm_peds \%>\%
   select(USUBJID, BRTHDTC, SEX) \%>\%
-  right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") \%>\%
+  right_join(., vs_peds, by = "USUBJID") \%>\%
   mutate(
     VSDT = ymd(VSDTC),
     BRTHDT = ymd(BRTHDTC)
diff --git a/man/derive_params_growth_height.Rd b/man/derive_params_growth_height.Rd
index 51f3513..d383bd6 100644
--- a/man/derive_params_growth_height.Rd
+++ b/man/derive_params_growth_height.Rd
@@ -131,9 +131,9 @@ library(pharmaversesdtm, warn.conflicts = FALSE)
 
 # derive weight for height/length only for those under 2 years old using WHO
 # weight for length reference file
-advs <- pharmaversesdtm::dm_peds \%>\%
+advs <- dm_peds \%>\%
   select(USUBJID, BRTHDTC, SEX) \%>\%
-  right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") \%>\%
+  right_join(., vs_peds, by = "USUBJID") \%>\%
   mutate(
     VSDT = ymd(VSDTC),
     BRTHDT = ymd(BRTHDTC)
@@ -146,7 +146,7 @@ advs <- pharmaversesdtm::dm_peds \%>\%
     out_unit = "days"
   )
 
-heights <- pharmaversesdtm::vs_peds \%>\%
+heights <- vs_peds \%>\%
   filter(VSTESTCD == "HEIGHT") \%>\%
   select(USUBJID, VSSTRESN, VSSTRESU, VSDTC) \%>\%
   rename(
diff --git a/vignettes/advs.Rmd b/vignettes/advs.Rmd
index d6beabc..a748e30 100644
--- a/vignettes/advs.Rmd
+++ b/vignettes/advs.Rmd
@@ -47,6 +47,7 @@ Once the required packages have been loaded, the first step is preparing the met
 
 ```{r message=FALSE}
 library(admiral)
+library(pharmaversesdtm, warn.conflicts = FALSE)
 library(admiralpeds)
 library(dplyr, warn.conflicts = FALSE)
 library(lubridate)