diff --git a/.Rbuildignore b/.Rbuildignore index 1656ec68..90bf411e 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -1,5 +1,3 @@ -^renv$ -^renv\.lock$ ^.*\.Rproj$ ^.*\.lycheeignore$ ^\.Rproj\.user$ diff --git a/.Rprofile b/.Rprofile deleted file mode 100644 index d059c2fc..00000000 --- a/.Rprofile +++ /dev/null @@ -1,48 +0,0 @@ -# Set renv profile base on R version. -.get_dependencies <- function(project_dir) { - - admdev_loc <- find.package("admiraldev", lib.loc = .libPaths(), quiet = TRUE) - adm_dev_suggests <- if(length(admdev_loc) != 0) { - renv:::renv_dependencies_discover_description(admdev_loc, fields = c("Depends", "Imports", "LinkingTo", "Suggests")) - } else { - data.frame(Packages = character(0)) - } - suggests_packages <- renv:::renv_dependencies_discover_description(project_dir, fields = "Suggests") - - packages <- names( - renv:::renv_package_dependencies( - unique(c( - project_dir, - adm_dev_suggests[["Package"]], - suggests_packages[["Package"]], - c("staged.dependencies", "renv", "styler") - )) - ) - ) - packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test", "pharmaversesdtm", getwd()))] -} - -options(renv.snapshot.filter = .get_dependencies) - -.renv_profile <- paste(R.version$major, substr(R.version$minor, 1, 1), sep = ".") -if (!file.exists("./renv/profile")) { - if (.renv_profile %in% c("4.1", "4.2", "4.3")) { - message("Set renv profile to `", .renv_profile, "`") - Sys.setenv("RENV_PROFILE" = .renv_profile) - } else { - message("This repository do not contains the renv profile for your R version.") - } -} else { - message( - "Using renv profile from `renv/profile` file.\n", - "The `", readLines("./renv/profile"), "` profile will be used." - ) -} - -if (Sys.getenv("GITHUB_ACTIONS") != "") { - options(repos = c(CRAN = "https://packagemanager.posit.co/cran/latest")) - Sys.setenv("RENV_AUTOLOADER_ENABLED" = FALSE) -} -Sys.setenv("RENV_CONFIG_SANDBOX_ENABLED" = FALSE) -Sys.setenv("RENV_CONFIG_AUTO_SNAPSHOT" = FALSE) -source("renv/activate.R") diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md index 88626f9e..178752ee 100644 --- a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -1,18 +1,18 @@ -Thank you for your Pull Request! We have developed this task checklist from the [Development Process Guide](https://pharmaverse.github.io/admiral/CONTRIBUTING.html) to help with the final steps of the process. Completing the below tasks helps to ensure our reviewers can maximize their time on your code as well as making sure the admiral codebase remains robust and consistent. +Thank you for your Pull Request! We have developed this task checklist from the [Development Process Guide](https://pharmaverse.github.io/admiral/CONTRIBUTING.html) to help with the final steps of the process. Completing the below tasks helps to ensure our reviewers can maximize their time on your code as well as making sure the admiral family codebase remains robust and consistent. Please check off each taskbox as an acknowledgment that you completed the task or check off that it is not relevant to your Pull Request. This checklist is part of the Github Action workflows and the Pull Request will not be merged into the `main` branch until you have checked off each task. -- [ ] Place Closes # into the beginning of your Pull Request Title (Use Edit button in top-right if you need to update) -- [ ] Code is formatted according to the [tidyverse style guide](https://style.tidyverse.org/). Run `styler::style_file()` to style R and Rmd files -- [ ] Updated relevant unit tests or have written new unit tests - See [Unit Test Guide](https://pharmaverse.github.io/admiraldev/articles/unit_test_guidance.html) +- [ ] Place Closes # into the beginning of your Pull Request Title (Use Edit button in top-right if you need to update). +- [ ] Code is formatted according to the [tidyverse style guide](https://style.tidyverse.org/). Run `styler::style_file()` to style R and Rmd files. +- [ ] Updated relevant unit tests or have written new unit tests, which should consider realistic data scenarios and edge cases, e.g. empty datasets, errors, boundary cases etc. - See [Unit Test Guide](https://pharmaverse.github.io/admiraldev/articles/unit_test_guidance.html#tests-should-be-robust-to-cover-realistic-data-scenarios) - [ ] If you removed/replaced any function and/or function parameters, did you fully follow the [deprecation guidance](https://pharmaverse.github.io/admiraldev/articles/programming_strategy.html#deprecation)? -- [ ] Update to all relevant roxygen headers and examples. -- [ ] Run `devtools::document()` so all `.Rd` files in the `man` folder and the `NAMESPACE` file in the project root are updated appropriately +- [ ] Update to all relevant roxygen headers and examples, including keywords and families. Refer to the [categorization of functions] +- [ ] Run `devtools::document()` so all `.Rd` files in the `man` folder and the `NAMESPACE` file in the project root are updated appropriately. - [ ] Address any updates needed for vignettes and/or templates -- [ ] Update `NEWS.md` if the changes pertain to a user-facing function (i.e. it has an `@export` tag) or documentation aimed at users (rather than developers) +- [ ] Update `NEWS.md` under the header `# admiralophtha (development version)` if the changes pertain to a user-facing function (i.e. it has an `@export` tag) or documentation aimed at users (rather than developers) - [ ] Build admiralophtha site `pkgdown::build_site()` and check that all affected examples are displayed correctly and that all new functions occur on the "[Reference](https://pharmaverse.github.io/admiralophtha/reference/index.html)" page. -- [ ] Address or fix all lintr warnings and errors - `lintr::lint_package()` -- [ ] Run `R CMD check` locally and address all errors and warnings - `devtools::check()` +- [ ] Address or fix all lintr warnings and errors - `lintr::lint_package()`. +- [ ] Run `R CMD check` locally and address all errors and warnings - `devtools::check()`. - [ ] Link the issue so that it closes after successful merging. - [ ] Address all merge conflicts and resolve appropriately. - [ ] Pat yourself on the back for a job well done! Much love to your accomplishment! diff --git a/LICENSE.md b/LICENSE.md index 37d7bd9f..afd77eb2 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -8,55 +8,55 @@ _<>_ #### 1. Definitions -“License” shall mean the terms and conditions for use, reproduction, and +"License" shall mean the terms and conditions for use, reproduction, and distribution as defined by Sections 1 through 9 of this document. -“Licensor” shall mean the copyright owner or entity authorized by the copyright +"Licensor" shall mean the copyright owner or entity authorized by the copyright owner that is granting the License. -“Legal Entity” shall mean the union of the acting entity and all other entities +"Legal Entity" shall mean the union of the acting entity and all other entities that control, are controlled by, or are under common control with that entity. -For the purposes of this definition, “control” means **(i)** the power, direct or +For the purposes of this definition, "control" means **(i)** the power, direct or indirect, to cause the direction or management of such entity, whether by contract or otherwise, or **(ii)** ownership of fifty percent (50%) or more of the outstanding shares, or **(iii)** beneficial ownership of such entity. -“You” (or “Your”) shall mean an individual or Legal Entity exercising +"You" (or "Your") shall mean an individual or Legal Entity exercising permissions granted by this License. -“Source” form shall mean the preferred form for making modifications, including +"Source" form shall mean the preferred form for making modifications, including but not limited to software source code, documentation source, and configuration files. -“Object” form shall mean any form resulting from mechanical transformation or +"Object" form shall mean any form resulting from mechanical transformation or translation of a Source form, including but not limited to compiled object code, generated documentation, and conversions to other media types. -“Work” shall mean the work of authorship, whether in Source or Object form, made +"Work" shall mean the work of authorship, whether in Source or Object form, made available under the License, as indicated by a copyright notice that is included in or attached to the work (an example is provided in the Appendix below). -“Derivative Works” shall mean any work, whether in Source or Object form, that +"Derivative Works" shall mean any work, whether in Source or Object form, that is based on (or derived from) the Work and for which the editorial revisions, annotations, elaborations, or other modifications represent, as a whole, an original work of authorship. For the purposes of this License, Derivative Works shall not include works that remain separable from, or merely link (or bind by name) to the interfaces of, the Work and Derivative Works thereof. -“Contribution” shall mean any work of authorship, including the original version +"Contribution" shall mean any work of authorship, including the original version of the Work and any modifications or additions to that Work or Derivative Works thereof, that is intentionally submitted to Licensor for inclusion in the Work by the copyright owner or by an individual or Legal Entity authorized to submit on behalf of the copyright owner. For the purposes of this definition, -“submitted” means any form of electronic, verbal, or written communication sent +"submitted" means any form of electronic, verbal, or written communication sent to the Licensor or its representatives, including but not limited to communication on electronic mailing lists, source code control systems, and issue tracking systems that are managed by, or on behalf of, the Licensor for the purpose of discussing and improving the Work, but excluding communication that is conspicuously marked or otherwise designated in writing by the copyright -owner as “Not a Contribution.” +owner as "Not a Contribution." -“Contributor” shall mean Licensor and any individual or Legal Entity on behalf +"Contributor" shall mean Licensor and any individual or Legal Entity on behalf of whom a Contribution has been received by Licensor and subsequently incorporated within the Work. @@ -97,7 +97,7 @@ changed the files; and all copyright, patent, trademark, and attribution notices from the Source form of the Work, excluding those notices that do not pertain to any part of the Derivative Works; and -* **(d)** If the Work includes a “NOTICE” text file as part of its distribution, then any +* **(d)** If the Work includes a "NOTICE" text file as part of its distribution, then any Derivative Works that You distribute must include a readable copy of the attribution notices contained within such NOTICE file, excluding those notices that do not pertain to any part of the Derivative Works, in at least one of the @@ -136,7 +136,7 @@ reproducing the content of the NOTICE file. #### 7. Disclaimer of Warranty Unless required by applicable law or agreed to in writing, Licensor provides the -Work (and each Contributor provides its Contributions) on an “AS IS” BASIS, +Work (and each Contributor provides its Contributions) on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied, including, without limitation, any warranties or conditions of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A PARTICULAR PURPOSE. You are @@ -176,7 +176,7 @@ notice, with the fields enclosed by brackets `[]` replaced with your own identifying information. (Don't include the brackets!) The text should be enclosed in the appropriate comment syntax for the file format. We also recommend that a file or class name and description of purpose be included on -the same “printed page” as the copyright notice for easier identification within +the same "printed page" as the copyright notice for easier identification within third-party archives. Copyright 2021 F. Hoffmann-La Roche AG and GlaxoSmithKline LLC diff --git a/R/convert_etdrs_to_logmar.R b/R/convert_etdrs_to_logmar.R index 3022e032..d208ddbd 100644 --- a/R/convert_etdrs_to_logmar.R +++ b/R/convert_etdrs_to_logmar.R @@ -9,7 +9,7 @@ #' #' Source for conversion formula: #' Beck, R.W., et al. A computerized method of visual acuity testing. -#' American Journal of Ophthalmology, 135(2), pp.194–205. +#' American Journal of Ophthalmology, 135(2), pp.194-205. #' doi:https://doi.org/10.1016/s0002-9394(02)01825-1. #' #' @author Rachel Linacre diff --git a/R/convert_logmar_to_etdrs.R b/R/convert_logmar_to_etdrs.R index ecdb56de..1c966cd3 100644 --- a/R/convert_logmar_to_etdrs.R +++ b/R/convert_logmar_to_etdrs.R @@ -9,7 +9,7 @@ #' #' Source for conversion formula: #' Beck, R.W., et al. A computerized method of visual acuity testing. -#' American Journal of Ophthalmology, 135(2), pp.194–205. +#' American Journal of Ophthalmology, 135(2), pp.194-205. #' doi:https://doi.org/10.1016/s0002-9394(02)01825-1. #' #' @author Nandini R Thampi diff --git a/README.md b/README.md index 6c166f8c..49c73733 100644 --- a/README.md +++ b/README.md @@ -42,7 +42,7 @@ remotes::install_github("pharmaverse/admiralophtha", ref = "devel") ## R Versions -Here’s a summary of our strategy for this package related to R versions: +Here's a summary of our strategy for this package related to R versions: * R versions for developers and users will follow the same as `{admiral}` core package. @@ -58,7 +58,7 @@ developer community: * [Slack](https://pharmaverse.slack.com/) - for informal discussions, Q\&A and building our user community. If you - don’t have access, use this + don't have access, use this [link](https://join.slack.com/t/pharmaverse/shared_invite/zt-yv5atkr4-Np2ytJ6W_QKz_4Olo7Jo9A) to join the pharmaverse Slack workspace * [GitHub diff --git a/inst/WORDLIST b/inst/WORDLIST index 1afc3bb3..f4746a2b 100644 --- a/inst/WORDLIST +++ b/inst/WORDLIST @@ -41,7 +41,7 @@ Onboarding README SDTM TAs -Template’ +Template' USUBJIDs adae adam @@ -58,7 +58,6 @@ https onboarding paramcds pharmaverse -renv repo studyeye tribble diff --git a/man/convert_etdrs_to_logmar.Rd b/man/convert_etdrs_to_logmar.Rd index 12352158..92397952 100644 --- a/man/convert_etdrs_to_logmar.Rd +++ b/man/convert_etdrs_to_logmar.Rd @@ -20,7 +20,7 @@ ETDRS value converted to logMAR as logMAR = -0.02 * ETDRS + 1.7 Source for conversion formula: Beck, R.W., et al. A computerized method of visual acuity testing. -American Journal of Ophthalmology, 135(2), pp.194–205. +American Journal of Ophthalmology, 135(2), pp.194-205. doi:https://doi.org/10.1016/s0002-9394(02)01825-1. } \examples{ diff --git a/man/convert_logmar_to_etdrs.Rd b/man/convert_logmar_to_etdrs.Rd index 15da6bfe..692e727d 100644 --- a/man/convert_logmar_to_etdrs.Rd +++ b/man/convert_logmar_to_etdrs.Rd @@ -20,7 +20,7 @@ logMAR value converted to ETDRS as ETDRS = -(logMAR - 1.7) / 0.02 Source for conversion formula: Beck, R.W., et al. A computerized method of visual acuity testing. -American Journal of Ophthalmology, 135(2), pp.194–205. +American Journal of Ophthalmology, 135(2), pp.194-205. doi:https://doi.org/10.1016/s0002-9394(02)01825-1. } \examples{ diff --git a/renv.lock b/renv.lock deleted file mode 100644 index 5801ed10..00000000 --- a/renv.lock +++ /dev/null @@ -1,1701 +0,0 @@ -{ - "R": { - "Version": "4.1.3", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://packagemanager.posit.co/cran/latest" - }, - { - "Name": "RSPM", - "URL": "https://packagemanager.posit.co/cran/2022-03-10" - } - ] - }, - "Packages": { - "DT": { - "Package": "DT", - "Version": "0.21", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "crosstalk", - "htmltools", - "htmlwidgets", - "jquerylib", - "jsonlite", - "magrittr", - "promises" - ], - "Hash": "45fa28dbf288cd606e13ca35d3d72437" - }, - "R.cache": { - "Package": "R.cache", - "Version": "0.15.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "R.utils", - "digest", - "utils" - ], - "Hash": "e92a8ea8388c47c82ed8aa435ed3be50" - }, - "R.methodsS3": { - "Package": "R.methodsS3", - "Version": "1.8.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "4bf6453323755202d5909697b6f7c109" - }, - "R.oo": { - "Package": "R.oo", - "Version": "1.24.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "methods", - "utils" - ], - "Hash": "5709328352717e2f0a9c012be8a97554" - }, - "R.utils": { - "Package": "R.utils", - "Version": "2.11.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "methods", - "tools", - "utils" - ], - "Hash": "a7ecb8e60815c7a18648e84cd121b23a" - }, - "R6": { - "Package": "R6", - "Version": "2.5.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "470851b6d5d0ac559e9d01bb352b4021" - }, - "Rcpp": { - "Package": "Rcpp", - "Version": "1.0.8", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods", - "utils" - ], - "Hash": "22b546dd7e337f6c0c58a39983a496bc" - }, - "askpass": { - "Package": "askpass", - "Version": "1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "sys" - ], - "Hash": "e8a22846fff485f0be3770c2da758713" - }, - "backports": { - "Package": "backports", - "Version": "1.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "c39fbec8a30d23e721980b8afb31984c" - }, - "base64enc": { - "Package": "base64enc", - "Version": "0.1-3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "543776ae6848fde2f48ff3816d0628bc" - }, - "brew": { - "Package": "brew", - "Version": "1.0-7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "38875ea52350ff4b4c03849fc69736c8" - }, - "brio": { - "Package": "brio", - "Version": "1.1.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "976cf154dfb043c012d87cddd8bca363" - }, - "bslib": { - "Package": "bslib", - "Version": "0.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "htmltools", - "jquerylib", - "jsonlite", - "rlang", - "sass" - ], - "Hash": "56ae7e1987b340186a8a5a157c2ec358" - }, - "cachem": { - "Package": "cachem", - "Version": "1.0.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "fastmap", - "rlang" - ], - "Hash": "648c5b3d71e6a37e3043617489a0a0e9" - }, - "callr": { - "Package": "callr", - "Version": "3.7.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "processx", - "utils" - ], - "Hash": "9b2191ede20fa29828139b9900922e51" - }, - "cellranger": { - "Package": "cellranger", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rematch", - "tibble" - ], - "Hash": "f61dbaec772ccd2e17705c1e872e9e7c" - }, - "cli": { - "Package": "cli", - "Version": "3.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "0d297d01734d2bcea40197bd4971a764" - }, - "clipr": { - "Package": "clipr", - "Version": "0.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "3f038e5ac7f41d4ac41ce658c85e3042" - }, - "codetools": { - "Package": "codetools", - "Version": "0.2-18", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "019388fc48e48b3da0d3a76ff94608a8" - }, - "collections": { - "Package": "collections", - "Version": "0.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "92537c684a3d2eaa6bd8f65c28ef97f0" - }, - "commonmark": { - "Package": "commonmark", - "Version": "1.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "2ba81b120c1655ab696c935ef33ea716" - }, - "covr": { - "Package": "covr", - "Version": "3.5.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "digest", - "httr", - "jsonlite", - "methods", - "rex", - "stats", - "utils", - "withr", - "yaml" - ], - "Hash": "6d80a9fc3c0c8473153b54fa54719dfd" - }, - "cpp11": { - "Package": "cpp11", - "Version": "0.4.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "ed588261931ee3be2c700d22e94a29ab" - }, - "crayon": { - "Package": "crayon", - "Version": "1.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "methods", - "utils" - ], - "Hash": "741c2e098e98afe3dc26a7b0e5489f4e" - }, - "credentials": { - "Package": "credentials", - "Version": "1.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "curl", - "jsonlite", - "openssl", - "sys" - ], - "Hash": "93762d0a34d78e6a025efdbfb5c6bb41" - }, - "crosstalk": { - "Package": "crosstalk", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "htmltools", - "jsonlite", - "lazyeval" - ], - "Hash": "6aa54f69598c32177e920eb3402e8293" - }, - "curl": { - "Package": "curl", - "Version": "4.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "022c42d49c28e95d69ca60446dbabf88" - }, - "cyclocomp": { - "Package": "cyclocomp", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "callr", - "crayon", - "desc", - "remotes", - "withr" - ], - "Hash": "53cbed70a2f7472d48fb6aef08442f25" - }, - "desc": { - "Package": "desc", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "rprojroot", - "utils" - ], - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21" - }, - "devtools": { - "Package": "devtools", - "Version": "2.4.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "callr", - "cli", - "desc", - "ellipsis", - "fs", - "httr", - "lifecycle", - "memoise", - "pkgbuild", - "pkgload", - "rcmdcheck", - "remotes", - "rlang", - "roxygen2", - "rstudioapi", - "rversions", - "sessioninfo", - "stats", - "testthat", - "tools", - "usethis", - "utils", - "withr" - ], - "Hash": "fc35e13bb582e5fe6f63f3d647a4cbe5" - }, - "diffdf": { - "Package": "diffdf", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "tibble" - ], - "Hash": "9ddedef46959baad2080047a1b0117fe" - }, - "diffobj": { - "Package": "diffobj", - "Version": "0.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "bcaa8b95f8d7d01a5dedfd959ce88ab8" - }, - "digest": { - "Package": "digest", - "Version": "0.6.29", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "cf6b206a045a684728c3267ef7596190" - }, - "downlit": { - "Package": "downlit", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "brio", - "desc", - "digest", - "evaluate", - "fansi", - "memoise", - "rlang", - "vctrs", - "yaml" - ], - "Hash": "ba63dc9ab5a31f3209892437e40c5f60" - }, - "dplyr": { - "Package": "dplyr", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "generics", - "glue", - "lifecycle", - "magrittr", - "methods", - "pillar", - "rlang", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "eb5742d256a0d9306d85ea68756d8187" - }, - "ellipsis": { - "Package": "ellipsis", - "Version": "0.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rlang" - ], - "Hash": "bb0eec2fe32e88d9e2836c2f73ea2077" - }, - "evaluate": { - "Package": "evaluate", - "Version": "0.15", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "699a7a93d08c962d9f8950b2d7a227f1" - }, - "fansi": { - "Package": "fansi", - "Version": "1.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "utils" - ], - "Hash": "f28149c2d7a1342a834b314e95e67260" - }, - "fastmap": { - "Package": "fastmap", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "77bd60a6157420d4ffa93b27cf6a58b8" - }, - "fontawesome": { - "Package": "fontawesome", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "htmltools", - "rlang" - ], - "Hash": "55624ed409e46c5f358b2c060be87f67" - }, - "fs": { - "Package": "fs", - "Version": "1.5.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "7c89603d81793f0d5486d91ab1fc6f1d" - }, - "generics": { - "Package": "generics", - "Version": "0.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "177475892cf4a55865868527654a7741" - }, - "gert": { - "Package": "gert", - "Version": "1.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "credentials", - "openssl", - "rstudioapi", - "sys", - "zip" - ], - "Hash": "8fddce7cbd59467106266a6e93e253b4" - }, - "gh": { - "Package": "gh", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "gitcreds", - "httr", - "ini", - "jsonlite" - ], - "Hash": "38c2580abbda249bd6afeec00d14f531" - }, - "git2r": { - "Package": "git2r", - "Version": "0.29.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "graphics", - "utils" - ], - "Hash": "b114135c4749076bd5ef74a5827b6f62" - }, - "gitcreds": { - "Package": "gitcreds", - "Version": "0.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "f3aefccc1cc50de6338146b62f115de8" - }, - "glue": { - "Package": "glue", - "Version": "1.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e" - }, - "highr": { - "Package": "highr", - "Version": "0.9", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "xfun" - ], - "Hash": "8eb36c8125038e648e5d111c0d7b2ed4" - }, - "hms": { - "Package": "hms", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "ellipsis", - "lifecycle", - "methods", - "pkgconfig", - "rlang", - "vctrs" - ], - "Hash": "5b8a2dd0fdbe2ab4f6081e6c7be6dfca" - }, - "htmltools": { - "Package": "htmltools", - "Version": "0.5.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "base64enc", - "digest", - "fastmap", - "grDevices", - "rlang", - "utils" - ], - "Hash": "526c484233f42522278ab06fb185cb26" - }, - "htmlwidgets": { - "Package": "htmlwidgets", - "Version": "1.5.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "htmltools", - "jsonlite", - "yaml" - ], - "Hash": "76147821cd3fcd8c4b04e1ef0498e7fb" - }, - "httpuv": { - "Package": "httpuv", - "Version": "1.6.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "Rcpp", - "later", - "promises", - "utils" - ], - "Hash": "97fe71f0a4a1c9890e6c2128afa04bc0" - }, - "httr": { - "Package": "httr", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "curl", - "jsonlite", - "mime", - "openssl" - ], - "Hash": "a525aba14184fec243f9eaec62fbed43" - }, - "hunspell": { - "Package": "hunspell", - "Version": "3.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "Rcpp", - "digest" - ], - "Hash": "3987784c19192ad0f2261c456d936df1" - }, - "ini": { - "Package": "ini", - "Version": "0.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "6154ec2223172bce8162d4153cda21f7" - }, - "jquerylib": { - "Package": "jquerylib", - "Version": "0.1.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools" - ], - "Hash": "5aab57a3bd297eee1c1d862735972182" - }, - "jsonlite": { - "Package": "jsonlite", - "Version": "1.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods" - ], - "Hash": "d07e729b27b372429d42d24d503613a0" - }, - "knitr": { - "Package": "knitr", - "Version": "1.40", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "evaluate", - "highr", - "methods", - "stringr", - "tools", - "xfun", - "yaml" - ], - "Hash": "caea8b0f899a0b1738444b9bc47067e7" - }, - "languageserver": { - "Package": "languageserver", - "Version": "0.3.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "collections", - "fs", - "jsonlite", - "lintr", - "parallel", - "roxygen2", - "stringi", - "styler", - "tools", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "f62ed8b09fd56cd70291bd077bc52c4b" - }, - "later": { - "Package": "later", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "Rcpp", - "rlang" - ], - "Hash": "7e7b457d7766bc47f2a5f21cc2984f8e" - }, - "lazyeval": { - "Package": "lazyeval", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "d908914ae53b04d4c0c0fd72ecc35370" - }, - "lifecycle": { - "Package": "lifecycle", - "Version": "1.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "rlang" - ], - "Hash": "001cecbeac1cff9301bdc3775ee46a86" - }, - "lintr": { - "Package": "lintr", - "Version": "3.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "backports", - "codetools", - "crayon", - "cyclocomp", - "digest", - "glue", - "jsonlite", - "knitr", - "rex", - "stats", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "b21ebd652d940f099915221f3328ab7b" - }, - "lubridate": { - "Package": "lubridate", - "Version": "1.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "generics", - "methods" - ], - "Hash": "2ff5eedb6ee38fb1b81205c73be1be5a" - }, - "magrittr": { - "Package": "magrittr", - "Version": "2.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "cdc87ecd81934679d1557633d8e1fe51" - }, - "memoise": { - "Package": "memoise", - "Version": "2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cachem", - "rlang" - ], - "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c" - }, - "mime": { - "Package": "mime", - "Version": "0.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tools" - ], - "Hash": "18e9c28c1d3ca1560ce30658b22ce104" - }, - "miniUI": { - "Package": "miniUI", - "Version": "0.1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools", - "shiny", - "utils" - ], - "Hash": "fec5f52652d60615fdb3957b3d74324a" - }, - "openssl": { - "Package": "openssl", - "Version": "2.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass" - ], - "Hash": "cf4329aac12c2c44089974559c18e446" - }, - "pillar": { - "Package": "pillar", - "Version": "1.9.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "fansi", - "glue", - "lifecycle", - "rlang", - "utf8", - "utils", - "vctrs" - ], - "Hash": "15da5a8412f317beeee6175fbc76f4bb" - }, - "pkgbuild": { - "Package": "pkgbuild", - "Version": "1.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "cli", - "crayon", - "desc", - "prettyunits", - "rprojroot", - "withr" - ], - "Hash": "66d2adfed274daf81ccfe77d974c3b9b" - }, - "pkgconfig": { - "Package": "pkgconfig", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "01f28d4278f15c76cddbea05899c5d6f" - }, - "pkgdown": { - "Package": "pkgdown", - "Version": "2.0.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "callr", - "cli", - "desc", - "digest", - "downlit", - "fs", - "httr", - "jsonlite", - "magrittr", - "memoise", - "purrr", - "ragg", - "rlang", - "rmarkdown", - "tibble", - "whisker", - "withr", - "xml2", - "yaml" - ], - "Hash": "16fa15449c930bf3a7761d3c68f8abf9" - }, - "pkgload": { - "Package": "pkgload", - "Version": "1.2.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "crayon", - "desc", - "methods", - "rlang", - "rprojroot", - "rstudioapi", - "utils", - "withr" - ], - "Hash": "7533cd805940821bf23eaf3c8d4c1735" - }, - "praise": { - "Package": "praise", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "a555924add98c99d2f411e37e7d25e9f" - }, - "prettyunits": { - "Package": "prettyunits", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "95ef9167b75dde9d2ccc3c7528393e7e" - }, - "processx": { - "Package": "processx", - "Version": "3.6.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "ps", - "utils" - ], - "Hash": "a11891e28c1f1e5ddd773ba1b8c07cf6" - }, - "progress": { - "Package": "progress", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "crayon", - "hms", - "prettyunits" - ], - "Hash": "14dc9f7a3c91ebb14ec5bb9208a07061" - }, - "promises": { - "Package": "promises", - "Version": "1.2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "Rcpp", - "later", - "magrittr", - "rlang", - "stats" - ], - "Hash": "4ab2c43adb4d4699cf3690acd378d75d" - }, - "ps": { - "Package": "ps", - "Version": "1.6.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "32620e2001c1dce1af49c49dccbb9420" - }, - "purrr": { - "Package": "purrr", - "Version": "0.3.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "magrittr", - "rlang" - ], - "Hash": "97def703420c8ab10d8f0e6c72101e02" - }, - "ragg": { - "Package": "ragg", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "systemfonts", - "textshaping" - ], - "Hash": "14932bb6f2739c771ca4ceaba6b4248e" - }, - "rappdirs": { - "Package": "rappdirs", - "Version": "0.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "5e3c5dc0b071b21fa128676560dbe94d" - }, - "rcmdcheck": { - "Package": "rcmdcheck", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "callr", - "cli", - "curl", - "desc", - "digest", - "pkgbuild", - "prettyunits", - "rprojroot", - "sessioninfo", - "utils", - "withr", - "xopen" - ], - "Hash": "8f25ebe2ec38b1f2aef3b0d2ef76f6c4" - }, - "readxl": { - "Package": "readxl", - "Version": "1.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "Rcpp", - "cellranger", - "progress", - "tibble", - "utils" - ], - "Hash": "63537c483c2dbec8d9e3183b3735254a" - }, - "rematch": { - "Package": "rematch", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c66b930d20bb6d858cd18e1cebcfae5c" - }, - "rematch2": { - "Package": "rematch2", - "Version": "2.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tibble" - ], - "Hash": "76c9e04c712a05848ae7a23d2f170a40" - }, - "remotes": { - "Package": "remotes", - "Version": "2.4.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "63d15047eb239f95160112bcadc4fcb9" - }, - "renv": { - "Package": "renv", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "c321cd99d56443dbffd1c9e673c0c1a2" - }, - "rex": { - "Package": "rex", - "Version": "1.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "lazyeval" - ], - "Hash": "ae34cd56890607370665bee5bd17812f" - }, - "rlang": { - "Package": "rlang", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "dc079ccd156cde8647360f473c1fa718" - }, - "rmarkdown": { - "Package": "rmarkdown", - "Version": "2.17", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "evaluate", - "htmltools", - "jquerylib", - "jsonlite", - "knitr", - "methods", - "stringr", - "tinytex", - "tools", - "utils", - "xfun", - "yaml" - ], - "Hash": "e97c8be593e010f93520e8215c0f9189" - }, - "roxygen2": { - "Package": "roxygen2", - "Version": "7.2.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brew", - "cli", - "commonmark", - "cpp11", - "desc", - "knitr", - "methods", - "pkgload", - "purrr", - "rlang", - "stringi", - "stringr", - "utils", - "withr", - "xml2" - ], - "Hash": "7b153c746193b143c14baa072bae4e27" - }, - "rprojroot": { - "Package": "rprojroot", - "Version": "2.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "249d8cd1e74a8f6a26194a91b47f21d1" - }, - "rstudioapi": { - "Package": "rstudioapi", - "Version": "0.13", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "06c85365a03fdaf699966cc1d3cf53ea" - }, - "rversions": { - "Package": "rversions", - "Version": "2.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "curl", - "utils", - "xml2" - ], - "Hash": "f88fab00907b312f8b23ec13e2d437cb" - }, - "sass": { - "Package": "sass", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "fs", - "htmltools", - "rappdirs", - "rlang" - ], - "Hash": "50cf822feb64bb3977bda0b7091be623" - }, - "sessioninfo": { - "Package": "sessioninfo", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "tools", - "utils" - ], - "Hash": "3f9796a8d0a0e8c6eb49a4b029359d1f" - }, - "shiny": { - "Package": "shiny", - "Version": "1.7.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "bslib", - "cachem", - "commonmark", - "crayon", - "ellipsis", - "fastmap", - "fontawesome", - "glue", - "grDevices", - "htmltools", - "httpuv", - "jsonlite", - "later", - "lifecycle", - "methods", - "mime", - "promises", - "rlang", - "sourcetools", - "tools", - "utils", - "withr", - "xtable" - ], - "Hash": "00344c227c7bd0ab5d78052c5d736c44" - }, - "sourcetools": { - "Package": "sourcetools", - "Version": "0.1.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "947e4e02a79effa5d512473e10f41797" - }, - "spelling": { - "Package": "spelling", - "Version": "2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "commonmark", - "hunspell", - "knitr", - "xml2" - ], - "Hash": "b8c899a5c83f0d897286550481c91798" - }, - "staged.dependencies": { - "Package": "staged.dependencies", - "Version": "0.3.1", - "Source": "GitHub", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteUsername": "openpharma", - "RemoteRepo": "staged.dependencies", - "RemoteRef": "main", - "RemoteSha": "1ab184a029bef8839a57bb6acd1c5c919cf1fd89", - "Requirements": [ - "desc", - "devtools", - "digest", - "dplyr", - "fs", - "git2r", - "glue", - "httr", - "jsonlite", - "methods", - "rcmdcheck", - "remotes", - "rlang", - "stats", - "tidyr", - "utils", - "withr", - "yaml" - ], - "Hash": "ea298f9fb221a8c7ca4c9e55e9c29b48" - }, - "stringi": { - "Package": "stringi", - "Version": "1.7.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "tools", - "utils" - ], - "Hash": "bba431031d30789535745a9627ac9271" - }, - "stringr": { - "Package": "stringr", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "glue", - "magrittr", - "stringi" - ], - "Hash": "0759e6b6c0957edb1311028a49a35e76" - }, - "styler": { - "Package": "styler", - "Version": "1.9.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.cache", - "cli", - "magrittr", - "purrr", - "rlang", - "rprojroot", - "tools", - "vctrs", - "withr" - ], - "Hash": "ed8c90822b7da46beee603f263a85fe0" - }, - "sys": { - "Package": "sys", - "Version": "3.4", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "b227d13e29222b4574486cfcbde077fa" - }, - "systemfonts": { - "Package": "systemfonts", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "90b28393209827327de889f49935140a" - }, - "testthat": { - "Package": "testthat", - "Version": "3.1.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brio", - "callr", - "cli", - "desc", - "digest", - "ellipsis", - "evaluate", - "jsonlite", - "lifecycle", - "magrittr", - "methods", - "pkgload", - "praise", - "processx", - "ps", - "rlang", - "utils", - "waldo", - "withr" - ], - "Hash": "7eb5fd202a61d2fb78af5869b6c08998" - }, - "textshaping": { - "Package": "textshaping", - "Version": "0.3.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "systemfonts" - ], - "Hash": "1ab6223d3670fac7143202cb6a2d43d5" - }, - "tibble": { - "Package": "tibble", - "Version": "3.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "fansi", - "lifecycle", - "magrittr", - "methods", - "pillar", - "pkgconfig", - "rlang", - "utils", - "vctrs" - ], - "Hash": "37695ff125982007d42a59ad10982ff2" - }, - "tidyr": { - "Package": "tidyr", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "dplyr", - "ellipsis", - "glue", - "lifecycle", - "magrittr", - "purrr", - "rlang", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "d8b95b7fee945d7da6888cf7eb71a49c" - }, - "tidyselect": { - "Package": "tidyselect", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang", - "vctrs", - "withr" - ], - "Hash": "79540e5fcd9e0435af547d885f184fd5" - }, - "tinytex": { - "Package": "tinytex", - "Version": "0.37", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "xfun" - ], - "Hash": "a80abeb527a977e4bef21873d29222dd" - }, - "usethis": { - "Package": "usethis", - "Version": "2.1.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "clipr", - "crayon", - "curl", - "desc", - "fs", - "gert", - "gh", - "glue", - "jsonlite", - "lifecycle", - "purrr", - "rappdirs", - "rlang", - "rprojroot", - "rstudioapi", - "stats", - "utils", - "whisker", - "withr", - "yaml" - ], - "Hash": "c499f488e6dd7718accffaee5bc5a79b" - }, - "utf8": { - "Package": "utf8", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "c9c462b759a5cc844ae25b5942654d13" - }, - "vctrs": { - "Package": "vctrs", - "Version": "0.6.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang" - ], - "Hash": "7e877404388794361277be95d8445de8" - }, - "waldo": { - "Package": "waldo", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "diffobj", - "fansi", - "glue", - "methods", - "rematch2", - "rlang", - "tibble" - ], - "Hash": "035fba89d0c86e2113120f93301b98ad" - }, - "whisker": { - "Package": "whisker", - "Version": "0.4", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "ca970b96d894e90397ed20637a0c1bbe" - }, - "withr": { - "Package": "withr", - "Version": "2.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], - "Hash": "c0e49a9760983e81e55cdd9be92e7182" - }, - "xfun": { - "Package": "xfun", - "Version": "0.34", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "stats", - "tools" - ], - "Hash": "9eba2411b0b1f879797141bd24df7407" - }, - "xml2": { - "Package": "xml2", - "Version": "1.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "40682ed6a969ea5abfd351eb67833adc" - }, - "xmlparsedata": { - "Package": "xmlparsedata", - "Version": "1.0.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "45e4bf3c46476896e821fc0a408fb4fc" - }, - "xopen": { - "Package": "xopen", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "processx" - ], - "Hash": "6c85f015dee9cc7710ddd20f86881f58" - }, - "xtable": { - "Package": "xtable", - "Version": "1.8-4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "utils" - ], - "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2" - }, - "yaml": { - "Package": "yaml", - "Version": "2.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "458bb38374d73bf83b1bb85e353da200" - }, - "zip": { - "Package": "zip", - "Version": "2.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c7eef2996ac270a18c2715c997a727c5" - } - } -} diff --git a/renv/.gitignore b/renv/.gitignore deleted file mode 100644 index 2649d0a0..00000000 --- a/renv/.gitignore +++ /dev/null @@ -1,8 +0,0 @@ -cellar/ -sandbox/ -library/ -local/ -lock/ -python/ -staging/ -profile diff --git a/renv/activate.R b/renv/activate.R deleted file mode 100644 index cc742fc9..00000000 --- a/renv/activate.R +++ /dev/null @@ -1,1181 +0,0 @@ - -local({ - - # the requested version of renv - version <- "1.0.0" - attr(version, "sha") <- NULL - - # the project directory - project <- getwd() - - # figure out whether the autoloader is enabled - enabled <- local({ - - # first, check config option - override <- getOption("renv.config.autoloader.enabled") - if (!is.null(override)) - return(override) - - # next, check environment variables - # TODO: prefer using the configuration one in the future - envvars <- c( - "RENV_CONFIG_AUTOLOADER_ENABLED", - "RENV_AUTOLOADER_ENABLED", - "RENV_ACTIVATE_PROJECT" - ) - - for (envvar in envvars) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(tolower(envval) %in% c("true", "t", "1")) - } - - # enable by default - TRUE - - }) - - if (!enabled) - return(FALSE) - - # avoid recursion - if (identical(getOption("renv.autoloader.running"), TRUE)) { - warning("ignoring recursive attempt to run renv autoloader") - return(invisible(TRUE)) - } - - # signal that we're loading renv during R startup - options(renv.autoloader.running = TRUE) - on.exit(options(renv.autoloader.running = NULL), add = TRUE) - - # signal that we've consented to use renv - options(renv.consent = TRUE) - - # load the 'utils' package eagerly -- this ensures that renv shims, which - # mask 'utils' packages, will come first on the search path - library(utils, lib.loc = .Library) - - # unload renv if it's already been loaded - if ("renv" %in% loadedNamespaces()) - unloadNamespace("renv") - - # load bootstrap tools - `%||%` <- function(x, y) { - if (is.null(x)) y else x - } - - catf <- function(fmt, ..., appendLF = TRUE) { - - quiet <- getOption("renv.bootstrap.quiet", default = FALSE) - if (quiet) - return(invisible()) - - msg <- sprintf(fmt, ...) - cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") - - invisible(msg) - - } - - header <- function(label, - ..., - prefix = "#", - suffix = "-", - n = min(getOption("width"), 78)) - { - label <- sprintf(label, ...) - n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) - if (n <= 0) - return(paste(prefix, label)) - - tail <- paste(rep.int(suffix, n), collapse = "") - paste0(prefix, " ", label, " ", tail) - - } - - startswith <- function(string, prefix) { - substring(string, 1, nchar(prefix)) == prefix - } - - bootstrap <- function(version, library) { - - friendly <- renv_bootstrap_version_friendly(version) - section <- header(sprintf("Bootstrapping renv %s", friendly)) - catf(section) - - # attempt to download renv - catf("- Downloading renv ... ", appendLF = FALSE) - withCallingHandlers( - tarball <- renv_bootstrap_download(version), - error = function(err) { - catf("FAILED") - stop("failed to download:\n", conditionMessage(err)) - } - ) - catf("OK") - on.exit(unlink(tarball), add = TRUE) - - # now attempt to install - catf("- Installing renv ... ", appendLF = FALSE) - withCallingHandlers( - status <- renv_bootstrap_install(version, tarball, library), - error = function(err) { - catf("FAILED") - stop("failed to install:\n", conditionMessage(err)) - } - ) - catf("OK") - - # add empty line to break up bootstrapping from normal output - catf("") - - return(invisible()) - } - - renv_bootstrap_tests_running <- function() { - getOption("renv.tests.running", default = FALSE) - } - - renv_bootstrap_repos <- function() { - - # get CRAN repository - cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") - - # check for repos override - repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) { - - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) - - return(repos) - - } - - # check for lockfile repositories - repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) - if (!inherits(repos, "error") && length(repos)) - return(repos) - - # retrieve current repos - repos <- getOption("repos") - - # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- cran - - # add in renv.bootstrap.repos if set - default <- c(FALLBACK = "https://cloud.r-project.org") - extra <- getOption("renv.bootstrap.repos", default = default) - repos <- c(repos, extra) - - # remove duplicates that might've snuck in - dupes <- duplicated(repos) | duplicated(names(repos)) - repos[!dupes] - - } - - renv_bootstrap_repos_lockfile <- function() { - - lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") - if (!file.exists(lockpath)) - return(NULL) - - lockfile <- tryCatch(renv_json_read(lockpath), error = identity) - if (inherits(lockfile, "error")) { - warning(lockfile) - return(NULL) - } - - repos <- lockfile$R$Repositories - if (length(repos) == 0) - return(NULL) - - keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) - vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) - names(vals) <- keys - - return(vals) - - } - - renv_bootstrap_download <- function(version) { - - sha <- attr(version, "sha", exact = TRUE) - - methods <- if (!is.null(sha)) { - - # attempting to bootstrap a development version of renv - c( - function() renv_bootstrap_download_tarball(sha), - function() renv_bootstrap_download_github(sha) - ) - - } else { - - # attempting to bootstrap a release version of renv - c( - function() renv_bootstrap_download_tarball(version), - function() renv_bootstrap_download_cran_latest(version), - function() renv_bootstrap_download_cran_archive(version) - ) - - } - - for (method in methods) { - path <- tryCatch(method(), error = identity) - if (is.character(path) && file.exists(path)) - return(path) - } - - stop("All download methods failed") - - } - - renv_bootstrap_download_impl <- function(url, destfile) { - - mode <- "wb" - - # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 - fixup <- - Sys.info()[["sysname"]] == "Windows" && - substring(url, 1L, 5L) == "file:" - - if (fixup) - mode <- "w+b" - - args <- list( - url = url, - destfile = destfile, - mode = mode, - quiet = TRUE - ) - - if ("headers" %in% names(formals(utils::download.file))) - args$headers <- renv_bootstrap_download_custom_headers(url) - - do.call(utils::download.file, args) - - } - - renv_bootstrap_download_custom_headers <- function(url) { - - headers <- getOption("renv.download.headers") - if (is.null(headers)) - return(character()) - - if (!is.function(headers)) - stopf("'renv.download.headers' is not a function") - - headers <- headers(url) - if (length(headers) == 0L) - return(character()) - - if (is.list(headers)) - headers <- unlist(headers, recursive = FALSE, use.names = TRUE) - - ok <- - is.character(headers) && - is.character(names(headers)) && - all(nzchar(names(headers))) - - if (!ok) - stop("invocation of 'renv.download.headers' did not return a named character vector") - - headers - - } - - renv_bootstrap_download_cran_latest <- function(version) { - - spec <- renv_bootstrap_download_cran_latest_find(version) - type <- spec$type - repos <- spec$repos - - baseurl <- utils::contrib.url(repos = repos, type = type) - ext <- if (identical(type, "source")) - ".tar.gz" - else if (Sys.info()[["sysname"]] == "Windows") - ".zip" - else - ".tgz" - name <- sprintf("renv_%s%s", version, ext) - url <- paste(baseurl, name, sep = "/") - - destfile <- file.path(tempdir(), name) - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (inherits(status, "condition")) - return(FALSE) - - # report success and return - destfile - - } - - renv_bootstrap_download_cran_latest_find <- function(version) { - - # check whether binaries are supported on this system - binary <- - getOption("renv.bootstrap.binary", default = TRUE) && - !identical(.Platform$pkgType, "source") && - !identical(getOption("pkgType"), "source") && - Sys.info()[["sysname"]] %in% c("Darwin", "Windows") - - types <- c(if (binary) "binary", "source") - - # iterate over types + repositories - for (type in types) { - for (repos in renv_bootstrap_repos()) { - - # retrieve package database - db <- tryCatch( - as.data.frame( - utils::available.packages(type = type, repos = repos), - stringsAsFactors = FALSE - ), - error = identity - ) - - if (inherits(db, "error")) - next - - # check for compatible entry - entry <- db[db$Package %in% "renv" & db$Version %in% version, ] - if (nrow(entry) == 0) - next - - # found it; return spec to caller - spec <- list(entry = entry, type = type, repos = repos) - return(spec) - - } - } - - # if we got here, we failed to find renv - fmt <- "renv %s is not available from your declared package repositories" - stop(sprintf(fmt, version)) - - } - - renv_bootstrap_download_cran_archive <- function(version) { - - name <- sprintf("renv_%s.tar.gz", version) - repos <- renv_bootstrap_repos() - urls <- file.path(repos, "src/contrib/Archive/renv", name) - destfile <- file.path(tempdir(), name) - - for (url in urls) { - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (identical(status, 0L)) - return(destfile) - - } - - return(FALSE) - - } - - renv_bootstrap_download_tarball <- function(version) { - - # if the user has provided the path to a tarball via - # an environment variable, then use it - tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) - if (is.na(tarball)) - return() - - # allow directories - if (dir.exists(tarball)) { - name <- sprintf("renv_%s.tar.gz", version) - tarball <- file.path(tarball, name) - } - - # bail if it doesn't exist - if (!file.exists(tarball)) { - - # let the user know we weren't able to honour their request - fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." - msg <- sprintf(fmt, tarball) - warning(msg) - - # bail - return() - - } - - catf("- Using local tarball '%s'.", tarball) - tarball - - } - - renv_bootstrap_download_github <- function(version) { - - enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") - if (!identical(enabled, "TRUE")) - return(FALSE) - - # prepare download options - pat <- Sys.getenv("GITHUB_PAT") - if (nzchar(Sys.which("curl")) && nzchar(pat)) { - fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "curl", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(pat)) { - fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "wget", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } - - url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) - name <- sprintf("renv_%s.tar.gz", version) - destfile <- file.path(tempdir(), name) - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (!identical(status, 0L)) - return(FALSE) - - renv_bootstrap_download_augment(destfile) - - return(destfile) - - } - - # Add Sha to DESCRIPTION. This is stop gap until #890, after which we - # can use renv::install() to fully capture metadata. - renv_bootstrap_download_augment <- function(destfile) { - sha <- renv_bootstrap_git_extract_sha1_tar(destfile) - if (is.null(sha)) { - return() - } - - # Untar - tempdir <- tempfile("renv-github-") - on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) - untar(destfile, exdir = tempdir) - pkgdir <- dir(tempdir, full.names = TRUE)[[1]] - - # Modify description - desc_path <- file.path(pkgdir, "DESCRIPTION") - desc_lines <- readLines(desc_path) - remotes_fields <- c( - "RemoteType: github", - "RemoteHost: api.github.com", - "RemoteRepo: renv", - "RemoteUsername: rstudio", - "RemotePkgRef: rstudio/renv", - paste("RemoteRef: ", sha), - paste("RemoteSha: ", sha) - ) - writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) - - # Re-tar - local({ - old <- setwd(tempdir) - on.exit(setwd(old), add = TRUE) - - tar(destfile, compression = "gzip") - }) - invisible() - } - - # Extract the commit hash from a git archive. Git archives include the SHA1 - # hash as the comment field of the tarball pax extended header - # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) - # For GitHub archives this should be the first header after the default one - # (512 byte) header. - renv_bootstrap_git_extract_sha1_tar <- function(bundle) { - - # open the bundle for reading - # We use gzcon for everything because (from ?gzcon) - # > Reading from a connection which does not supply a ‘gzip’ magic - # > header is equivalent to reading from the original connection - conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) - on.exit(close(conn)) - - # The default pax header is 512 bytes long and the first pax extended header - # with the comment should be 51 bytes long - # `52 comment=` (11 chars) + 40 byte SHA1 hash - len <- 0x200 + 0x33 - res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) - - if (grepl("^52 comment=", res)) { - sub("52 comment=", "", res) - } else { - NULL - } - } - - renv_bootstrap_install <- function(version, tarball, library) { - - # attempt to install it into project library - dir.create(library, showWarnings = FALSE, recursive = TRUE) - output <- renv_bootstrap_install_impl(library, tarball) - - # check for successful install - status <- attr(output, "status") - if (is.null(status) || identical(status, 0L)) - return(status) - - # an error occurred; report it - header <- "installation of renv failed" - lines <- paste(rep.int("=", nchar(header)), collapse = "") - text <- paste(c(header, lines, output), collapse = "\n") - stop(text) - - } - - renv_bootstrap_install_impl <- function(library, tarball) { - - # invoke using system2 so we can capture and report output - bin <- R.home("bin") - exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" - R <- file.path(bin, exe) - - args <- c( - "--vanilla", "CMD", "INSTALL", "--no-multiarch", - "-l", shQuote(path.expand(library)), - shQuote(path.expand(tarball)) - ) - - system2(R, args, stdout = TRUE, stderr = TRUE) - - } - - renv_bootstrap_platform_prefix <- function() { - - # construct version prefix - version <- paste(R.version$major, R.version$minor, sep = ".") - prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-") - - # include SVN revision for development versions of R - # (to avoid sharing platform-specific artefacts with released versions of R) - devel <- - identical(R.version[["status"]], "Under development (unstable)") || - identical(R.version[["nickname"]], "Unsuffered Consequences") - - if (devel) - prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r") - - # build list of path components - components <- c(prefix, R.version$platform) - - # include prefix if provided by user - prefix <- renv_bootstrap_platform_prefix_impl() - if (!is.na(prefix) && nzchar(prefix)) - components <- c(prefix, components) - - # build prefix - paste(components, collapse = "/") - - } - - renv_bootstrap_platform_prefix_impl <- function() { - - # if an explicit prefix has been supplied, use it - prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) - if (!is.na(prefix)) - return(prefix) - - # if the user has requested an automatic prefix, generate it - auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) - if (auto %in% c("TRUE", "True", "true", "1")) - return(renv_bootstrap_platform_prefix_auto()) - - # empty string on failure - "" - - } - - renv_bootstrap_platform_prefix_auto <- function() { - - prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) - if (inherits(prefix, "error") || prefix %in% "unknown") { - - msg <- paste( - "failed to infer current operating system", - "please file a bug report at https://github.com/rstudio/renv/issues", - sep = "; " - ) - - warning(msg) - - } - - prefix - - } - - renv_bootstrap_platform_os <- function() { - - sysinfo <- Sys.info() - sysname <- sysinfo[["sysname"]] - - # handle Windows + macOS up front - if (sysname == "Windows") - return("windows") - else if (sysname == "Darwin") - return("macos") - - # check for os-release files - for (file in c("/etc/os-release", "/usr/lib/os-release")) - if (file.exists(file)) - return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) - - # check for redhat-release files - if (file.exists("/etc/redhat-release")) - return(renv_bootstrap_platform_os_via_redhat_release()) - - "unknown" - - } - - renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { - - # read /etc/os-release - release <- utils::read.table( - file = file, - sep = "=", - quote = c("\"", "'"), - col.names = c("Key", "Value"), - comment.char = "#", - stringsAsFactors = FALSE - ) - - vars <- as.list(release$Value) - names(vars) <- release$Key - - # get os name - os <- tolower(sysinfo[["sysname"]]) - - # read id - id <- "unknown" - for (field in c("ID", "ID_LIKE")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - id <- vars[[field]] - break - } - } - - # read version - version <- "unknown" - for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - version <- vars[[field]] - break - } - } - - # join together - paste(c(os, id, version), collapse = "-") - - } - - renv_bootstrap_platform_os_via_redhat_release <- function() { - - # read /etc/redhat-release - contents <- readLines("/etc/redhat-release", warn = FALSE) - - # infer id - id <- if (grepl("centos", contents, ignore.case = TRUE)) - "centos" - else if (grepl("redhat", contents, ignore.case = TRUE)) - "redhat" - else - "unknown" - - # try to find a version component (very hacky) - version <- "unknown" - - parts <- strsplit(contents, "[[:space:]]")[[1L]] - for (part in parts) { - - nv <- tryCatch(numeric_version(part), error = identity) - if (inherits(nv, "error")) - next - - version <- nv[1, 1] - break - - } - - paste(c("linux", id, version), collapse = "-") - - } - - renv_bootstrap_library_root_name <- function(project) { - - # use project name as-is if requested - asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") - if (asis) - return(basename(project)) - - # otherwise, disambiguate based on project's path - id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) - paste(basename(project), id, sep = "-") - - } - - renv_bootstrap_library_root <- function(project) { - - prefix <- renv_bootstrap_profile_prefix() - - path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) - if (!is.na(path)) - return(paste(c(path, prefix), collapse = "/")) - - path <- renv_bootstrap_library_root_impl(project) - if (!is.null(path)) { - name <- renv_bootstrap_library_root_name(project) - return(paste(c(path, prefix, name), collapse = "/")) - } - - renv_bootstrap_paths_renv("library", project = project) - - } - - renv_bootstrap_library_root_impl <- function(project) { - - root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) - if (!is.na(root)) - return(root) - - type <- renv_bootstrap_project_type(project) - if (identical(type, "package")) { - userdir <- renv_bootstrap_user_dir() - return(file.path(userdir, "library")) - } - - } - - renv_bootstrap_validate_version <- function(version, description = NULL) { - - # resolve description file - description <- description %||% { - path <- getNamespaceInfo("renv", "path") - packageDescription("renv", lib.loc = dirname(path)) - } - - # check whether requested version 'version' matches loaded version of renv - sha <- attr(version, "sha", exact = TRUE) - valid <- if (!is.null(sha)) - renv_bootstrap_validate_version_dev(sha, description) - else - renv_bootstrap_validate_version_release(version, description) - - if (valid) - return(TRUE) - - # the loaded version of renv doesn't match the requested version; - # give the user instructions on how to proceed - remote <- if (!is.null(description[["RemoteSha"]])) { - paste("rstudio/renv", description[["RemoteSha"]], sep = "@") - } else { - paste("renv", description[["Version"]], sep = "@") - } - - # display both loaded version + sha if available - friendly <- renv_bootstrap_version_friendly( - version = description[["Version"]], - sha = description[["RemoteSha"]] - ) - - fmt <- paste( - "renv %1$s was loaded from project library, but this project is configured to use renv %2$s.", - "- Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.", - "- Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.", - sep = "\n" - ) - catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) - - FALSE - - } - - renv_bootstrap_validate_version_dev <- function(version, description) { - expected <- description[["RemoteSha"]] - is.character(expected) && startswith(expected, version) - } - - renv_bootstrap_validate_version_release <- function(version, description) { - expected <- description[["Version"]] - is.character(expected) && identical(expected, version) - } - - renv_bootstrap_hash_text <- function(text) { - - hashfile <- tempfile("renv-hash-") - on.exit(unlink(hashfile), add = TRUE) - - writeLines(text, con = hashfile) - tools::md5sum(hashfile) - - } - - renv_bootstrap_load <- function(project, libpath, version) { - - # try to load renv from the project library - if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) - return(FALSE) - - # warn if the version of renv loaded does not match - renv_bootstrap_validate_version(version) - - # execute renv load hooks, if any - hooks <- getHook("renv::autoload") - for (hook in hooks) - if (is.function(hook)) - tryCatch(hook(), error = warning) - - # load the project - renv::load(project) - - TRUE - - } - - renv_bootstrap_profile_load <- function(project) { - - # if RENV_PROFILE is already set, just use that - profile <- Sys.getenv("RENV_PROFILE", unset = NA) - if (!is.na(profile) && nzchar(profile)) - return(profile) - - # check for a profile file (nothing to do if it doesn't exist) - path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) - if (!file.exists(path)) - return(NULL) - - # read the profile, and set it if it exists - contents <- readLines(path, warn = FALSE) - if (length(contents) == 0L) - return(NULL) - - # set RENV_PROFILE - profile <- contents[[1L]] - if (!profile %in% c("", "default")) - Sys.setenv(RENV_PROFILE = profile) - - profile - - } - - renv_bootstrap_profile_prefix <- function() { - profile <- renv_bootstrap_profile_get() - if (!is.null(profile)) - return(file.path("profiles", profile, "renv")) - } - - renv_bootstrap_profile_get <- function() { - profile <- Sys.getenv("RENV_PROFILE", unset = "") - renv_bootstrap_profile_normalize(profile) - } - - renv_bootstrap_profile_set <- function(profile) { - profile <- renv_bootstrap_profile_normalize(profile) - if (is.null(profile)) - Sys.unsetenv("RENV_PROFILE") - else - Sys.setenv(RENV_PROFILE = profile) - } - - renv_bootstrap_profile_normalize <- function(profile) { - - if (is.null(profile) || profile %in% c("", "default")) - return(NULL) - - profile - - } - - renv_bootstrap_path_absolute <- function(path) { - - substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( - substr(path, 1L, 1L) %in% c(letters, LETTERS) && - substr(path, 2L, 3L) %in% c(":/", ":\\") - ) - - } - - renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { - renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") - root <- if (renv_bootstrap_path_absolute(renv)) NULL else project - prefix <- if (profile) renv_bootstrap_profile_prefix() - components <- c(root, renv, prefix, ...) - paste(components, collapse = "/") - } - - renv_bootstrap_project_type <- function(path) { - - descpath <- file.path(path, "DESCRIPTION") - if (!file.exists(descpath)) - return("unknown") - - desc <- tryCatch( - read.dcf(descpath, all = TRUE), - error = identity - ) - - if (inherits(desc, "error")) - return("unknown") - - type <- desc$Type - if (!is.null(type)) - return(tolower(type)) - - package <- desc$Package - if (!is.null(package)) - return("package") - - "unknown" - - } - - renv_bootstrap_user_dir <- function() { - dir <- renv_bootstrap_user_dir_impl() - path.expand(chartr("\\", "/", dir)) - } - - renv_bootstrap_user_dir_impl <- function() { - - # use local override if set - override <- getOption("renv.userdir.override") - if (!is.null(override)) - return(override) - - # use R_user_dir if available - tools <- asNamespace("tools") - if (is.function(tools$R_user_dir)) - return(tools$R_user_dir("renv", "cache")) - - # try using our own backfill for older versions of R - envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") - for (envvar in envvars) { - root <- Sys.getenv(envvar, unset = NA) - if (!is.na(root)) - return(file.path(root, "R/renv")) - } - - # use platform-specific default fallbacks - if (Sys.info()[["sysname"]] == "Windows") - file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") - else if (Sys.info()[["sysname"]] == "Darwin") - "~/Library/Caches/org.R-project.R/R/renv" - else - "~/.cache/R/renv" - - } - - renv_bootstrap_version_friendly <- function(version, sha = NULL) { - sha <- sha %||% attr(version, "sha", exact = TRUE) - parts <- c(version, sprintf("[sha: %s]", substring(sha, 1L, 7L))) - paste(parts, collapse = " ") - } - - renv_bootstrap_run <- function(version, libpath) { - - # perform bootstrap - bootstrap(version, libpath) - - # exit early if we're just testing bootstrap - if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) - return(TRUE) - - # try again to load - if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = getwd())) - } - - # failed to download or load renv; warn the user - msg <- c( - "Failed to find an renv installation: the project will not be loaded.", - "Use `renv::activate()` to re-initialize the project." - ) - - warning(paste(msg, collapse = "\n"), call. = FALSE) - - } - - - renv_bootstrap_in_rstudio <- function() { - commandArgs()[[1]] == "RStudio" - } - - renv_json_read <- function(file = NULL, text = NULL) { - - jlerr <- NULL - - # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) { - - json <- catch(renv_json_read_jsonlite(file, text)) - if (!inherits(json, "error")) - return(json) - - jlerr <- json - - } - - # otherwise, fall back to the default JSON reader - json <- catch(renv_json_read_default(file, text)) - if (!inherits(json, "error")) - return(json) - - # report an error - if (!is.null(jlerr)) - stop(jlerr) - else - stop(json) - - } - - renv_json_read_jsonlite <- function(file = NULL, text = NULL) { - text <- paste(text %||% read(file), collapse = "\n") - jsonlite::fromJSON(txt = text, simplifyVector = FALSE) - } - - renv_json_read_default <- function(file = NULL, text = NULL) { - - # find strings in the JSON - text <- paste(text %||% read(file), collapse = "\n") - pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' - locs <- gregexpr(pattern, text, perl = TRUE)[[1]] - - # if any are found, replace them with placeholders - replaced <- text - strings <- character() - replacements <- character() - - if (!identical(c(locs), -1L)) { - - # get the string values - starts <- locs - ends <- locs + attr(locs, "match.length") - 1L - strings <- substring(text, starts, ends) - - # only keep those requiring escaping - strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) - - # compute replacements - replacements <- sprintf('"\032%i\032"', seq_along(strings)) - - # replace the strings - mapply(function(string, replacement) { - replaced <<- sub(string, replacement, replaced, fixed = TRUE) - }, strings, replacements) - - } - - # transform the JSON into something the R parser understands - transformed <- replaced - transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) - transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) - transformed <- gsub("[]}]", ")", transformed, perl = TRUE) - transformed <- gsub(":", "=", transformed, fixed = TRUE) - text <- paste(transformed, collapse = "\n") - - # parse it - json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] - - # construct map between source strings, replaced strings - map <- as.character(parse(text = strings)) - names(map) <- as.character(parse(text = replacements)) - - # convert to list - map <- as.list(map) - - # remap strings in object - remapped <- renv_json_remap(json, map) - - # evaluate - eval(remapped, envir = baseenv()) - - } - - renv_json_remap <- function(json, map) { - - # fix names - if (!is.null(names(json))) { - lhs <- match(names(json), names(map), nomatch = 0L) - rhs <- match(names(map), names(json), nomatch = 0L) - names(json)[rhs] <- map[lhs] - } - - # fix values - if (is.character(json)) - return(map[[json]] %||% json) - - # handle true, false, null - if (is.name(json)) { - text <- as.character(json) - if (text == "true") - return(TRUE) - else if (text == "false") - return(FALSE) - else if (text == "null") - return(NULL) - } - - # recurse - if (is.recursive(json)) { - for (i in seq_along(json)) { - json[i] <- list(renv_json_remap(json[[i]], map)) - } - } - - json - - } - - # load the renv profile, if any - renv_bootstrap_profile_load(project) - - # construct path to library root - root <- renv_bootstrap_library_root(project) - - # construct library prefix for platform - prefix <- renv_bootstrap_platform_prefix() - - # construct full libpath - libpath <- file.path(root, prefix) - - # attempt to load - if (renv_bootstrap_load(project, libpath, version)) - return(TRUE) - - if (renv_bootstrap_in_rstudio()) { - setHook("rstudio.sessionInit", function(...) { - renv_bootstrap_run(version, libpath) - - # Work around buglet in RStudio if hook uses readline - tryCatch( - { - tools <- as.environment("tools:rstudio") - tools$.rs.api.sendToConsole("", echo = FALSE, focus = FALSE) - }, - error = function(cnd) {} - ) - }) - } else { - renv_bootstrap_run(version, libpath) - } - - invisible() - -}) diff --git a/renv/profiles/4.1/renv.lock b/renv/profiles/4.1/renv.lock deleted file mode 100644 index 5801ed10..00000000 --- a/renv/profiles/4.1/renv.lock +++ /dev/null @@ -1,1701 +0,0 @@ -{ - "R": { - "Version": "4.1.3", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://packagemanager.posit.co/cran/latest" - }, - { - "Name": "RSPM", - "URL": "https://packagemanager.posit.co/cran/2022-03-10" - } - ] - }, - "Packages": { - "DT": { - "Package": "DT", - "Version": "0.21", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "crosstalk", - "htmltools", - "htmlwidgets", - "jquerylib", - "jsonlite", - "magrittr", - "promises" - ], - "Hash": "45fa28dbf288cd606e13ca35d3d72437" - }, - "R.cache": { - "Package": "R.cache", - "Version": "0.15.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "R.utils", - "digest", - "utils" - ], - "Hash": "e92a8ea8388c47c82ed8aa435ed3be50" - }, - "R.methodsS3": { - "Package": "R.methodsS3", - "Version": "1.8.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "4bf6453323755202d5909697b6f7c109" - }, - "R.oo": { - "Package": "R.oo", - "Version": "1.24.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "methods", - "utils" - ], - "Hash": "5709328352717e2f0a9c012be8a97554" - }, - "R.utils": { - "Package": "R.utils", - "Version": "2.11.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "methods", - "tools", - "utils" - ], - "Hash": "a7ecb8e60815c7a18648e84cd121b23a" - }, - "R6": { - "Package": "R6", - "Version": "2.5.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "470851b6d5d0ac559e9d01bb352b4021" - }, - "Rcpp": { - "Package": "Rcpp", - "Version": "1.0.8", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods", - "utils" - ], - "Hash": "22b546dd7e337f6c0c58a39983a496bc" - }, - "askpass": { - "Package": "askpass", - "Version": "1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "sys" - ], - "Hash": "e8a22846fff485f0be3770c2da758713" - }, - "backports": { - "Package": "backports", - "Version": "1.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "c39fbec8a30d23e721980b8afb31984c" - }, - "base64enc": { - "Package": "base64enc", - "Version": "0.1-3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "543776ae6848fde2f48ff3816d0628bc" - }, - "brew": { - "Package": "brew", - "Version": "1.0-7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "38875ea52350ff4b4c03849fc69736c8" - }, - "brio": { - "Package": "brio", - "Version": "1.1.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "976cf154dfb043c012d87cddd8bca363" - }, - "bslib": { - "Package": "bslib", - "Version": "0.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "htmltools", - "jquerylib", - "jsonlite", - "rlang", - "sass" - ], - "Hash": "56ae7e1987b340186a8a5a157c2ec358" - }, - "cachem": { - "Package": "cachem", - "Version": "1.0.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "fastmap", - "rlang" - ], - "Hash": "648c5b3d71e6a37e3043617489a0a0e9" - }, - "callr": { - "Package": "callr", - "Version": "3.7.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "processx", - "utils" - ], - "Hash": "9b2191ede20fa29828139b9900922e51" - }, - "cellranger": { - "Package": "cellranger", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rematch", - "tibble" - ], - "Hash": "f61dbaec772ccd2e17705c1e872e9e7c" - }, - "cli": { - "Package": "cli", - "Version": "3.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "0d297d01734d2bcea40197bd4971a764" - }, - "clipr": { - "Package": "clipr", - "Version": "0.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "3f038e5ac7f41d4ac41ce658c85e3042" - }, - "codetools": { - "Package": "codetools", - "Version": "0.2-18", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "019388fc48e48b3da0d3a76ff94608a8" - }, - "collections": { - "Package": "collections", - "Version": "0.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "92537c684a3d2eaa6bd8f65c28ef97f0" - }, - "commonmark": { - "Package": "commonmark", - "Version": "1.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "2ba81b120c1655ab696c935ef33ea716" - }, - "covr": { - "Package": "covr", - "Version": "3.5.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "digest", - "httr", - "jsonlite", - "methods", - "rex", - "stats", - "utils", - "withr", - "yaml" - ], - "Hash": "6d80a9fc3c0c8473153b54fa54719dfd" - }, - "cpp11": { - "Package": "cpp11", - "Version": "0.4.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "ed588261931ee3be2c700d22e94a29ab" - }, - "crayon": { - "Package": "crayon", - "Version": "1.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "methods", - "utils" - ], - "Hash": "741c2e098e98afe3dc26a7b0e5489f4e" - }, - "credentials": { - "Package": "credentials", - "Version": "1.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "curl", - "jsonlite", - "openssl", - "sys" - ], - "Hash": "93762d0a34d78e6a025efdbfb5c6bb41" - }, - "crosstalk": { - "Package": "crosstalk", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "htmltools", - "jsonlite", - "lazyeval" - ], - "Hash": "6aa54f69598c32177e920eb3402e8293" - }, - "curl": { - "Package": "curl", - "Version": "4.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "022c42d49c28e95d69ca60446dbabf88" - }, - "cyclocomp": { - "Package": "cyclocomp", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "callr", - "crayon", - "desc", - "remotes", - "withr" - ], - "Hash": "53cbed70a2f7472d48fb6aef08442f25" - }, - "desc": { - "Package": "desc", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "rprojroot", - "utils" - ], - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21" - }, - "devtools": { - "Package": "devtools", - "Version": "2.4.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "callr", - "cli", - "desc", - "ellipsis", - "fs", - "httr", - "lifecycle", - "memoise", - "pkgbuild", - "pkgload", - "rcmdcheck", - "remotes", - "rlang", - "roxygen2", - "rstudioapi", - "rversions", - "sessioninfo", - "stats", - "testthat", - "tools", - "usethis", - "utils", - "withr" - ], - "Hash": "fc35e13bb582e5fe6f63f3d647a4cbe5" - }, - "diffdf": { - "Package": "diffdf", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "tibble" - ], - "Hash": "9ddedef46959baad2080047a1b0117fe" - }, - "diffobj": { - "Package": "diffobj", - "Version": "0.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "bcaa8b95f8d7d01a5dedfd959ce88ab8" - }, - "digest": { - "Package": "digest", - "Version": "0.6.29", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "cf6b206a045a684728c3267ef7596190" - }, - "downlit": { - "Package": "downlit", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "brio", - "desc", - "digest", - "evaluate", - "fansi", - "memoise", - "rlang", - "vctrs", - "yaml" - ], - "Hash": "ba63dc9ab5a31f3209892437e40c5f60" - }, - "dplyr": { - "Package": "dplyr", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "generics", - "glue", - "lifecycle", - "magrittr", - "methods", - "pillar", - "rlang", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "eb5742d256a0d9306d85ea68756d8187" - }, - "ellipsis": { - "Package": "ellipsis", - "Version": "0.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rlang" - ], - "Hash": "bb0eec2fe32e88d9e2836c2f73ea2077" - }, - "evaluate": { - "Package": "evaluate", - "Version": "0.15", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "699a7a93d08c962d9f8950b2d7a227f1" - }, - "fansi": { - "Package": "fansi", - "Version": "1.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "utils" - ], - "Hash": "f28149c2d7a1342a834b314e95e67260" - }, - "fastmap": { - "Package": "fastmap", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "77bd60a6157420d4ffa93b27cf6a58b8" - }, - "fontawesome": { - "Package": "fontawesome", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "htmltools", - "rlang" - ], - "Hash": "55624ed409e46c5f358b2c060be87f67" - }, - "fs": { - "Package": "fs", - "Version": "1.5.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "7c89603d81793f0d5486d91ab1fc6f1d" - }, - "generics": { - "Package": "generics", - "Version": "0.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "177475892cf4a55865868527654a7741" - }, - "gert": { - "Package": "gert", - "Version": "1.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "credentials", - "openssl", - "rstudioapi", - "sys", - "zip" - ], - "Hash": "8fddce7cbd59467106266a6e93e253b4" - }, - "gh": { - "Package": "gh", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "gitcreds", - "httr", - "ini", - "jsonlite" - ], - "Hash": "38c2580abbda249bd6afeec00d14f531" - }, - "git2r": { - "Package": "git2r", - "Version": "0.29.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "graphics", - "utils" - ], - "Hash": "b114135c4749076bd5ef74a5827b6f62" - }, - "gitcreds": { - "Package": "gitcreds", - "Version": "0.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "f3aefccc1cc50de6338146b62f115de8" - }, - "glue": { - "Package": "glue", - "Version": "1.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e" - }, - "highr": { - "Package": "highr", - "Version": "0.9", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "xfun" - ], - "Hash": "8eb36c8125038e648e5d111c0d7b2ed4" - }, - "hms": { - "Package": "hms", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "ellipsis", - "lifecycle", - "methods", - "pkgconfig", - "rlang", - "vctrs" - ], - "Hash": "5b8a2dd0fdbe2ab4f6081e6c7be6dfca" - }, - "htmltools": { - "Package": "htmltools", - "Version": "0.5.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "base64enc", - "digest", - "fastmap", - "grDevices", - "rlang", - "utils" - ], - "Hash": "526c484233f42522278ab06fb185cb26" - }, - "htmlwidgets": { - "Package": "htmlwidgets", - "Version": "1.5.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "htmltools", - "jsonlite", - "yaml" - ], - "Hash": "76147821cd3fcd8c4b04e1ef0498e7fb" - }, - "httpuv": { - "Package": "httpuv", - "Version": "1.6.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "Rcpp", - "later", - "promises", - "utils" - ], - "Hash": "97fe71f0a4a1c9890e6c2128afa04bc0" - }, - "httr": { - "Package": "httr", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "curl", - "jsonlite", - "mime", - "openssl" - ], - "Hash": "a525aba14184fec243f9eaec62fbed43" - }, - "hunspell": { - "Package": "hunspell", - "Version": "3.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "Rcpp", - "digest" - ], - "Hash": "3987784c19192ad0f2261c456d936df1" - }, - "ini": { - "Package": "ini", - "Version": "0.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "6154ec2223172bce8162d4153cda21f7" - }, - "jquerylib": { - "Package": "jquerylib", - "Version": "0.1.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools" - ], - "Hash": "5aab57a3bd297eee1c1d862735972182" - }, - "jsonlite": { - "Package": "jsonlite", - "Version": "1.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods" - ], - "Hash": "d07e729b27b372429d42d24d503613a0" - }, - "knitr": { - "Package": "knitr", - "Version": "1.40", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "evaluate", - "highr", - "methods", - "stringr", - "tools", - "xfun", - "yaml" - ], - "Hash": "caea8b0f899a0b1738444b9bc47067e7" - }, - "languageserver": { - "Package": "languageserver", - "Version": "0.3.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "collections", - "fs", - "jsonlite", - "lintr", - "parallel", - "roxygen2", - "stringi", - "styler", - "tools", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "f62ed8b09fd56cd70291bd077bc52c4b" - }, - "later": { - "Package": "later", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "Rcpp", - "rlang" - ], - "Hash": "7e7b457d7766bc47f2a5f21cc2984f8e" - }, - "lazyeval": { - "Package": "lazyeval", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "d908914ae53b04d4c0c0fd72ecc35370" - }, - "lifecycle": { - "Package": "lifecycle", - "Version": "1.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "rlang" - ], - "Hash": "001cecbeac1cff9301bdc3775ee46a86" - }, - "lintr": { - "Package": "lintr", - "Version": "3.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "backports", - "codetools", - "crayon", - "cyclocomp", - "digest", - "glue", - "jsonlite", - "knitr", - "rex", - "stats", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "b21ebd652d940f099915221f3328ab7b" - }, - "lubridate": { - "Package": "lubridate", - "Version": "1.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "generics", - "methods" - ], - "Hash": "2ff5eedb6ee38fb1b81205c73be1be5a" - }, - "magrittr": { - "Package": "magrittr", - "Version": "2.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "cdc87ecd81934679d1557633d8e1fe51" - }, - "memoise": { - "Package": "memoise", - "Version": "2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cachem", - "rlang" - ], - "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c" - }, - "mime": { - "Package": "mime", - "Version": "0.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tools" - ], - "Hash": "18e9c28c1d3ca1560ce30658b22ce104" - }, - "miniUI": { - "Package": "miniUI", - "Version": "0.1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools", - "shiny", - "utils" - ], - "Hash": "fec5f52652d60615fdb3957b3d74324a" - }, - "openssl": { - "Package": "openssl", - "Version": "2.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass" - ], - "Hash": "cf4329aac12c2c44089974559c18e446" - }, - "pillar": { - "Package": "pillar", - "Version": "1.9.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "fansi", - "glue", - "lifecycle", - "rlang", - "utf8", - "utils", - "vctrs" - ], - "Hash": "15da5a8412f317beeee6175fbc76f4bb" - }, - "pkgbuild": { - "Package": "pkgbuild", - "Version": "1.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "cli", - "crayon", - "desc", - "prettyunits", - "rprojroot", - "withr" - ], - "Hash": "66d2adfed274daf81ccfe77d974c3b9b" - }, - "pkgconfig": { - "Package": "pkgconfig", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "01f28d4278f15c76cddbea05899c5d6f" - }, - "pkgdown": { - "Package": "pkgdown", - "Version": "2.0.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "callr", - "cli", - "desc", - "digest", - "downlit", - "fs", - "httr", - "jsonlite", - "magrittr", - "memoise", - "purrr", - "ragg", - "rlang", - "rmarkdown", - "tibble", - "whisker", - "withr", - "xml2", - "yaml" - ], - "Hash": "16fa15449c930bf3a7761d3c68f8abf9" - }, - "pkgload": { - "Package": "pkgload", - "Version": "1.2.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "crayon", - "desc", - "methods", - "rlang", - "rprojroot", - "rstudioapi", - "utils", - "withr" - ], - "Hash": "7533cd805940821bf23eaf3c8d4c1735" - }, - "praise": { - "Package": "praise", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "a555924add98c99d2f411e37e7d25e9f" - }, - "prettyunits": { - "Package": "prettyunits", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "95ef9167b75dde9d2ccc3c7528393e7e" - }, - "processx": { - "Package": "processx", - "Version": "3.6.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "ps", - "utils" - ], - "Hash": "a11891e28c1f1e5ddd773ba1b8c07cf6" - }, - "progress": { - "Package": "progress", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "crayon", - "hms", - "prettyunits" - ], - "Hash": "14dc9f7a3c91ebb14ec5bb9208a07061" - }, - "promises": { - "Package": "promises", - "Version": "1.2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "Rcpp", - "later", - "magrittr", - "rlang", - "stats" - ], - "Hash": "4ab2c43adb4d4699cf3690acd378d75d" - }, - "ps": { - "Package": "ps", - "Version": "1.6.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "32620e2001c1dce1af49c49dccbb9420" - }, - "purrr": { - "Package": "purrr", - "Version": "0.3.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "magrittr", - "rlang" - ], - "Hash": "97def703420c8ab10d8f0e6c72101e02" - }, - "ragg": { - "Package": "ragg", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "systemfonts", - "textshaping" - ], - "Hash": "14932bb6f2739c771ca4ceaba6b4248e" - }, - "rappdirs": { - "Package": "rappdirs", - "Version": "0.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "5e3c5dc0b071b21fa128676560dbe94d" - }, - "rcmdcheck": { - "Package": "rcmdcheck", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "callr", - "cli", - "curl", - "desc", - "digest", - "pkgbuild", - "prettyunits", - "rprojroot", - "sessioninfo", - "utils", - "withr", - "xopen" - ], - "Hash": "8f25ebe2ec38b1f2aef3b0d2ef76f6c4" - }, - "readxl": { - "Package": "readxl", - "Version": "1.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "Rcpp", - "cellranger", - "progress", - "tibble", - "utils" - ], - "Hash": "63537c483c2dbec8d9e3183b3735254a" - }, - "rematch": { - "Package": "rematch", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c66b930d20bb6d858cd18e1cebcfae5c" - }, - "rematch2": { - "Package": "rematch2", - "Version": "2.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tibble" - ], - "Hash": "76c9e04c712a05848ae7a23d2f170a40" - }, - "remotes": { - "Package": "remotes", - "Version": "2.4.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "63d15047eb239f95160112bcadc4fcb9" - }, - "renv": { - "Package": "renv", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "c321cd99d56443dbffd1c9e673c0c1a2" - }, - "rex": { - "Package": "rex", - "Version": "1.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "lazyeval" - ], - "Hash": "ae34cd56890607370665bee5bd17812f" - }, - "rlang": { - "Package": "rlang", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "dc079ccd156cde8647360f473c1fa718" - }, - "rmarkdown": { - "Package": "rmarkdown", - "Version": "2.17", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "evaluate", - "htmltools", - "jquerylib", - "jsonlite", - "knitr", - "methods", - "stringr", - "tinytex", - "tools", - "utils", - "xfun", - "yaml" - ], - "Hash": "e97c8be593e010f93520e8215c0f9189" - }, - "roxygen2": { - "Package": "roxygen2", - "Version": "7.2.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brew", - "cli", - "commonmark", - "cpp11", - "desc", - "knitr", - "methods", - "pkgload", - "purrr", - "rlang", - "stringi", - "stringr", - "utils", - "withr", - "xml2" - ], - "Hash": "7b153c746193b143c14baa072bae4e27" - }, - "rprojroot": { - "Package": "rprojroot", - "Version": "2.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "249d8cd1e74a8f6a26194a91b47f21d1" - }, - "rstudioapi": { - "Package": "rstudioapi", - "Version": "0.13", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "06c85365a03fdaf699966cc1d3cf53ea" - }, - "rversions": { - "Package": "rversions", - "Version": "2.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "curl", - "utils", - "xml2" - ], - "Hash": "f88fab00907b312f8b23ec13e2d437cb" - }, - "sass": { - "Package": "sass", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "fs", - "htmltools", - "rappdirs", - "rlang" - ], - "Hash": "50cf822feb64bb3977bda0b7091be623" - }, - "sessioninfo": { - "Package": "sessioninfo", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "tools", - "utils" - ], - "Hash": "3f9796a8d0a0e8c6eb49a4b029359d1f" - }, - "shiny": { - "Package": "shiny", - "Version": "1.7.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "bslib", - "cachem", - "commonmark", - "crayon", - "ellipsis", - "fastmap", - "fontawesome", - "glue", - "grDevices", - "htmltools", - "httpuv", - "jsonlite", - "later", - "lifecycle", - "methods", - "mime", - "promises", - "rlang", - "sourcetools", - "tools", - "utils", - "withr", - "xtable" - ], - "Hash": "00344c227c7bd0ab5d78052c5d736c44" - }, - "sourcetools": { - "Package": "sourcetools", - "Version": "0.1.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "947e4e02a79effa5d512473e10f41797" - }, - "spelling": { - "Package": "spelling", - "Version": "2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "commonmark", - "hunspell", - "knitr", - "xml2" - ], - "Hash": "b8c899a5c83f0d897286550481c91798" - }, - "staged.dependencies": { - "Package": "staged.dependencies", - "Version": "0.3.1", - "Source": "GitHub", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteUsername": "openpharma", - "RemoteRepo": "staged.dependencies", - "RemoteRef": "main", - "RemoteSha": "1ab184a029bef8839a57bb6acd1c5c919cf1fd89", - "Requirements": [ - "desc", - "devtools", - "digest", - "dplyr", - "fs", - "git2r", - "glue", - "httr", - "jsonlite", - "methods", - "rcmdcheck", - "remotes", - "rlang", - "stats", - "tidyr", - "utils", - "withr", - "yaml" - ], - "Hash": "ea298f9fb221a8c7ca4c9e55e9c29b48" - }, - "stringi": { - "Package": "stringi", - "Version": "1.7.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "tools", - "utils" - ], - "Hash": "bba431031d30789535745a9627ac9271" - }, - "stringr": { - "Package": "stringr", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "glue", - "magrittr", - "stringi" - ], - "Hash": "0759e6b6c0957edb1311028a49a35e76" - }, - "styler": { - "Package": "styler", - "Version": "1.9.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.cache", - "cli", - "magrittr", - "purrr", - "rlang", - "rprojroot", - "tools", - "vctrs", - "withr" - ], - "Hash": "ed8c90822b7da46beee603f263a85fe0" - }, - "sys": { - "Package": "sys", - "Version": "3.4", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "b227d13e29222b4574486cfcbde077fa" - }, - "systemfonts": { - "Package": "systemfonts", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "90b28393209827327de889f49935140a" - }, - "testthat": { - "Package": "testthat", - "Version": "3.1.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brio", - "callr", - "cli", - "desc", - "digest", - "ellipsis", - "evaluate", - "jsonlite", - "lifecycle", - "magrittr", - "methods", - "pkgload", - "praise", - "processx", - "ps", - "rlang", - "utils", - "waldo", - "withr" - ], - "Hash": "7eb5fd202a61d2fb78af5869b6c08998" - }, - "textshaping": { - "Package": "textshaping", - "Version": "0.3.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "systemfonts" - ], - "Hash": "1ab6223d3670fac7143202cb6a2d43d5" - }, - "tibble": { - "Package": "tibble", - "Version": "3.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "fansi", - "lifecycle", - "magrittr", - "methods", - "pillar", - "pkgconfig", - "rlang", - "utils", - "vctrs" - ], - "Hash": "37695ff125982007d42a59ad10982ff2" - }, - "tidyr": { - "Package": "tidyr", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "dplyr", - "ellipsis", - "glue", - "lifecycle", - "magrittr", - "purrr", - "rlang", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "d8b95b7fee945d7da6888cf7eb71a49c" - }, - "tidyselect": { - "Package": "tidyselect", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang", - "vctrs", - "withr" - ], - "Hash": "79540e5fcd9e0435af547d885f184fd5" - }, - "tinytex": { - "Package": "tinytex", - "Version": "0.37", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "xfun" - ], - "Hash": "a80abeb527a977e4bef21873d29222dd" - }, - "usethis": { - "Package": "usethis", - "Version": "2.1.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "clipr", - "crayon", - "curl", - "desc", - "fs", - "gert", - "gh", - "glue", - "jsonlite", - "lifecycle", - "purrr", - "rappdirs", - "rlang", - "rprojroot", - "rstudioapi", - "stats", - "utils", - "whisker", - "withr", - "yaml" - ], - "Hash": "c499f488e6dd7718accffaee5bc5a79b" - }, - "utf8": { - "Package": "utf8", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "c9c462b759a5cc844ae25b5942654d13" - }, - "vctrs": { - "Package": "vctrs", - "Version": "0.6.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang" - ], - "Hash": "7e877404388794361277be95d8445de8" - }, - "waldo": { - "Package": "waldo", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "diffobj", - "fansi", - "glue", - "methods", - "rematch2", - "rlang", - "tibble" - ], - "Hash": "035fba89d0c86e2113120f93301b98ad" - }, - "whisker": { - "Package": "whisker", - "Version": "0.4", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "ca970b96d894e90397ed20637a0c1bbe" - }, - "withr": { - "Package": "withr", - "Version": "2.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], - "Hash": "c0e49a9760983e81e55cdd9be92e7182" - }, - "xfun": { - "Package": "xfun", - "Version": "0.34", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "stats", - "tools" - ], - "Hash": "9eba2411b0b1f879797141bd24df7407" - }, - "xml2": { - "Package": "xml2", - "Version": "1.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "40682ed6a969ea5abfd351eb67833adc" - }, - "xmlparsedata": { - "Package": "xmlparsedata", - "Version": "1.0.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "45e4bf3c46476896e821fc0a408fb4fc" - }, - "xopen": { - "Package": "xopen", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "processx" - ], - "Hash": "6c85f015dee9cc7710ddd20f86881f58" - }, - "xtable": { - "Package": "xtable", - "Version": "1.8-4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "utils" - ], - "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2" - }, - "yaml": { - "Package": "yaml", - "Version": "2.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "458bb38374d73bf83b1bb85e353da200" - }, - "zip": { - "Package": "zip", - "Version": "2.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c7eef2996ac270a18c2715c997a727c5" - } - } -} diff --git a/renv/profiles/4.1/renv/.gitignore b/renv/profiles/4.1/renv/.gitignore deleted file mode 100644 index 0ec0cbba..00000000 --- a/renv/profiles/4.1/renv/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -library/ -local/ -cellar/ -lock/ -python/ -sandbox/ -staging/ diff --git a/renv/profiles/4.1/renv/settings.json b/renv/profiles/4.1/renv/settings.json deleted file mode 100644 index 4922677e..00000000 --- a/renv/profiles/4.1/renv/settings.json +++ /dev/null @@ -1,25 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [ - "admiral", - "admiraldev", - "admiral.test", - "admiralci", - "pharmaversesdtm" - ], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": null, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "custom", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -} diff --git a/renv/profiles/4.2/renv.lock b/renv/profiles/4.2/renv.lock deleted file mode 100644 index 7661270b..00000000 --- a/renv/profiles/4.2/renv.lock +++ /dev/null @@ -1,1785 +0,0 @@ -{ - "R": { - "Version": "4.2.3", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://packagemanager.posit.co/cran/latest" - }, - { - "Name": "RSPM", - "URL": "https://packagemanager.posit.co/cran/2023-03-15" - } - ] - }, - "Packages": { - "DT": { - "Package": "DT", - "Version": "0.27", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "crosstalk", - "htmltools", - "htmlwidgets", - "jquerylib", - "jsonlite", - "magrittr", - "promises" - ], - "Hash": "3444e6ed78763f9f13aaa39f2481eb34" - }, - "R.cache": { - "Package": "R.cache", - "Version": "0.16.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "R.utils", - "digest", - "utils" - ], - "Hash": "fe539ca3f8efb7410c3ae2cf5fe6c0f8" - }, - "R.methodsS3": { - "Package": "R.methodsS3", - "Version": "1.8.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "278c286fd6e9e75d0c2e8f731ea445c8" - }, - "R.oo": { - "Package": "R.oo", - "Version": "1.25.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "methods", - "utils" - ], - "Hash": "a0900a114f4f0194cf4aa8cd4a700681" - }, - "R.utils": { - "Package": "R.utils", - "Version": "2.12.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "methods", - "tools", - "utils" - ], - "Hash": "325f01db13da12c04d8f6e7be36ff514" - }, - "R6": { - "Package": "R6", - "Version": "2.5.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "470851b6d5d0ac559e9d01bb352b4021" - }, - "Rcpp": { - "Package": "Rcpp", - "Version": "1.0.10", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods", - "utils" - ], - "Hash": "e749cae40fa9ef469b6050959517453c" - }, - "askpass": { - "Package": "askpass", - "Version": "1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "sys" - ], - "Hash": "e8a22846fff485f0be3770c2da758713" - }, - "backports": { - "Package": "backports", - "Version": "1.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "c39fbec8a30d23e721980b8afb31984c" - }, - "base64enc": { - "Package": "base64enc", - "Version": "0.1-3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "543776ae6848fde2f48ff3816d0628bc" - }, - "brew": { - "Package": "brew", - "Version": "1.0-8", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "d69a786e85775b126bddbee185ae6084" - }, - "brio": { - "Package": "brio", - "Version": "1.1.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "976cf154dfb043c012d87cddd8bca363" - }, - "bslib": { - "Package": "bslib", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "base64enc", - "cachem", - "grDevices", - "htmltools", - "jquerylib", - "jsonlite", - "memoise", - "mime", - "rlang", - "sass" - ], - "Hash": "a7fbf03946ad741129dc81098722fca1" - }, - "cachem": { - "Package": "cachem", - "Version": "1.0.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "fastmap", - "rlang" - ], - "Hash": "cda74447c42f529de601fe4d4050daef" - }, - "callr": { - "Package": "callr", - "Version": "3.7.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "processx", - "utils" - ], - "Hash": "9b2191ede20fa29828139b9900922e51" - }, - "cellranger": { - "Package": "cellranger", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rematch", - "tibble" - ], - "Hash": "f61dbaec772ccd2e17705c1e872e9e7c" - }, - "cli": { - "Package": "cli", - "Version": "3.6.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "3177a5a16c243adc199ba33117bd9657" - }, - "clipr": { - "Package": "clipr", - "Version": "0.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "3f038e5ac7f41d4ac41ce658c85e3042" - }, - "codetools": { - "Package": "codetools", - "Version": "0.2-19", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "c089a619a7fae175d149d89164f8c7d8" - }, - "collections": { - "Package": "collections", - "Version": "0.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "90a0eda114ab0bef170ddbf5ef0cd93f" - }, - "commonmark": { - "Package": "commonmark", - "Version": "1.8.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "b6e3e947d1d7ebf3d2bdcea1bde63fe7" - }, - "covr": { - "Package": "covr", - "Version": "3.6.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "digest", - "httr", - "jsonlite", - "methods", - "rex", - "stats", - "utils", - "withr", - "yaml" - ], - "Hash": "a861cee34fbb4b107a73dd414ef56724" - }, - "cpp11": { - "Package": "cpp11", - "Version": "0.4.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "ed588261931ee3be2c700d22e94a29ab" - }, - "crayon": { - "Package": "crayon", - "Version": "1.5.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "methods", - "utils" - ], - "Hash": "e8a1e41acf02548751f45c718d55aa6a" - }, - "credentials": { - "Package": "credentials", - "Version": "1.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "curl", - "jsonlite", - "openssl", - "sys" - ], - "Hash": "93762d0a34d78e6a025efdbfb5c6bb41" - }, - "crosstalk": { - "Package": "crosstalk", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "htmltools", - "jsonlite", - "lazyeval" - ], - "Hash": "6aa54f69598c32177e920eb3402e8293" - }, - "curl": { - "Package": "curl", - "Version": "5.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "e4f97056611e8e6b8b852d13b7400cf1" - }, - "cyclocomp": { - "Package": "cyclocomp", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "callr", - "crayon", - "desc", - "remotes", - "withr" - ], - "Hash": "53cbed70a2f7472d48fb6aef08442f25" - }, - "desc": { - "Package": "desc", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "rprojroot", - "utils" - ], - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21" - }, - "devtools": { - "Package": "devtools", - "Version": "2.4.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "desc", - "ellipsis", - "fs", - "lifecycle", - "memoise", - "miniUI", - "pkgbuild", - "pkgdown", - "pkgload", - "profvis", - "rcmdcheck", - "remotes", - "rlang", - "roxygen2", - "rversions", - "sessioninfo", - "stats", - "testthat", - "tools", - "urlchecker", - "usethis", - "utils", - "withr" - ], - "Hash": "ea5bc8b4a6a01e4f12d98b58329930bb" - }, - "diffdf": { - "Package": "diffdf", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "tibble" - ], - "Hash": "9ddedef46959baad2080047a1b0117fe" - }, - "diffobj": { - "Package": "diffobj", - "Version": "0.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "bcaa8b95f8d7d01a5dedfd959ce88ab8" - }, - "digest": { - "Package": "digest", - "Version": "0.6.31", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "8b708f296afd9ae69f450f9640be8990" - }, - "downlit": { - "Package": "downlit", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "brio", - "desc", - "digest", - "evaluate", - "fansi", - "memoise", - "rlang", - "vctrs", - "withr", - "yaml" - ], - "Hash": "79bf3f66590752ffbba20f8d2da94c7c" - }, - "dplyr": { - "Package": "dplyr", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "generics", - "glue", - "lifecycle", - "magrittr", - "methods", - "pillar", - "rlang", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "eb5742d256a0d9306d85ea68756d8187" - }, - "ellipsis": { - "Package": "ellipsis", - "Version": "0.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rlang" - ], - "Hash": "bb0eec2fe32e88d9e2836c2f73ea2077" - }, - "evaluate": { - "Package": "evaluate", - "Version": "0.20", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "4b68aa51edd89a0e044a66e75ae3cc6c" - }, - "fansi": { - "Package": "fansi", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "utils" - ], - "Hash": "1d9e7ad3c8312a192dea7d3db0274fde" - }, - "fastmap": { - "Package": "fastmap", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "f7736a18de97dea803bde0a2daaafb27" - }, - "fontawesome": { - "Package": "fontawesome", - "Version": "0.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "htmltools", - "rlang" - ], - "Hash": "e80750aec5717dedc019ad7ee40e4a7c" - }, - "fs": { - "Package": "fs", - "Version": "1.6.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "f4dcd23b67e33d851d2079f703e8b985" - }, - "generics": { - "Package": "generics", - "Version": "0.1.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "15e9634c0fcd294799e9b2e929ed1b86" - }, - "gert": { - "Package": "gert", - "Version": "1.9.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "credentials", - "openssl", - "rstudioapi", - "sys", - "zip" - ], - "Hash": "9122b3958e749badb5c939f498038b57" - }, - "gh": { - "Package": "gh", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "gitcreds", - "httr2", - "ini", - "jsonlite", - "rlang" - ], - "Hash": "03533b1c875028233598f848fda44c4c" - }, - "git2r": { - "Package": "git2r", - "Version": "0.31.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "graphics", - "utils" - ], - "Hash": "acb972e0be37f83b9c762d962d75a188" - }, - "gitcreds": { - "Package": "gitcreds", - "Version": "0.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "ab08ac61f3e1be454ae21911eb8bc2fe" - }, - "glue": { - "Package": "glue", - "Version": "1.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e" - }, - "highr": { - "Package": "highr", - "Version": "0.10", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "xfun" - ], - "Hash": "06230136b2d2b9ba5805e1963fa6e890" - }, - "hms": { - "Package": "hms", - "Version": "1.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "ellipsis", - "lifecycle", - "methods", - "pkgconfig", - "rlang", - "vctrs" - ], - "Hash": "41100392191e1244b887878b533eea91" - }, - "htmltools": { - "Package": "htmltools", - "Version": "0.5.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "base64enc", - "digest", - "ellipsis", - "fastmap", - "grDevices", - "rlang", - "utils" - ], - "Hash": "9d27e99cc90bd701c0a7a63e5923f9b7" - }, - "htmlwidgets": { - "Package": "htmlwidgets", - "Version": "1.6.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "htmltools", - "jsonlite", - "knitr", - "rmarkdown", - "yaml" - ], - "Hash": "b677ee5954471eaa974c0d099a343a1a" - }, - "httpuv": { - "Package": "httpuv", - "Version": "1.6.9", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "Rcpp", - "later", - "promises", - "utils" - ], - "Hash": "1046aa31a57eae8b357267a56a0b6d8b" - }, - "httr": { - "Package": "httr", - "Version": "1.4.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "curl", - "jsonlite", - "mime", - "openssl" - ], - "Hash": "f6844033201269bec3ca0097bc6c97b3" - }, - "httr2": { - "Package": "httr2", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "curl", - "glue", - "magrittr", - "openssl", - "rappdirs", - "rlang", - "withr" - ], - "Hash": "5c09fe33064978ede54de42309c8b532" - }, - "hunspell": { - "Package": "hunspell", - "Version": "3.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "Rcpp", - "digest" - ], - "Hash": "656219b6f3f605499d7cdbe208656639" - }, - "ini": { - "Package": "ini", - "Version": "0.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "6154ec2223172bce8162d4153cda21f7" - }, - "jquerylib": { - "Package": "jquerylib", - "Version": "0.1.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools" - ], - "Hash": "5aab57a3bd297eee1c1d862735972182" - }, - "jsonlite": { - "Package": "jsonlite", - "Version": "1.8.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods" - ], - "Hash": "a4269a09a9b865579b2635c77e572374" - }, - "knitr": { - "Package": "knitr", - "Version": "1.42", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "evaluate", - "highr", - "methods", - "tools", - "xfun", - "yaml" - ], - "Hash": "8329a9bcc82943c8069104d4be3ee22d" - }, - "languageserver": { - "Package": "languageserver", - "Version": "0.3.15", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "collections", - "fs", - "jsonlite", - "lintr", - "parallel", - "roxygen2", - "stringi", - "styler", - "tools", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "fbea0dd12b4f5dedbe3654e4b9cbbddc" - }, - "later": { - "Package": "later", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "Rcpp", - "rlang" - ], - "Hash": "7e7b457d7766bc47f2a5f21cc2984f8e" - }, - "lazyeval": { - "Package": "lazyeval", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "d908914ae53b04d4c0c0fd72ecc35370" - }, - "lifecycle": { - "Package": "lifecycle", - "Version": "1.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "rlang" - ], - "Hash": "001cecbeac1cff9301bdc3775ee46a86" - }, - "lintr": { - "Package": "lintr", - "Version": "3.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "backports", - "codetools", - "crayon", - "cyclocomp", - "digest", - "glue", - "jsonlite", - "knitr", - "rex", - "stats", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "b21ebd652d940f099915221f3328ab7b" - }, - "lubridate": { - "Package": "lubridate", - "Version": "1.9.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "generics", - "methods", - "timechange" - ], - "Hash": "e25f18436e3efd42c7c590a1c4c15390" - }, - "magrittr": { - "Package": "magrittr", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "7ce2733a9826b3aeb1775d56fd305472" - }, - "memoise": { - "Package": "memoise", - "Version": "2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cachem", - "rlang" - ], - "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c" - }, - "mime": { - "Package": "mime", - "Version": "0.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tools" - ], - "Hash": "18e9c28c1d3ca1560ce30658b22ce104" - }, - "miniUI": { - "Package": "miniUI", - "Version": "0.1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools", - "shiny", - "utils" - ], - "Hash": "fec5f52652d60615fdb3957b3d74324a" - }, - "openssl": { - "Package": "openssl", - "Version": "2.0.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass" - ], - "Hash": "0f7cd2962e3044bb940cca4f4b5cecbe" - }, - "pillar": { - "Package": "pillar", - "Version": "1.9.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "fansi", - "glue", - "lifecycle", - "rlang", - "utf8", - "utils", - "vctrs" - ], - "Hash": "15da5a8412f317beeee6175fbc76f4bb" - }, - "pkgbuild": { - "Package": "pkgbuild", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "cli", - "crayon", - "desc", - "prettyunits", - "processx", - "rprojroot", - "withr" - ], - "Hash": "d6c3008d79653a0f267703288230105e" - }, - "pkgconfig": { - "Package": "pkgconfig", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "01f28d4278f15c76cddbea05899c5d6f" - }, - "pkgdown": { - "Package": "pkgdown", - "Version": "2.0.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "callr", - "cli", - "desc", - "digest", - "downlit", - "fs", - "httr", - "jsonlite", - "magrittr", - "memoise", - "purrr", - "ragg", - "rlang", - "rmarkdown", - "tibble", - "whisker", - "withr", - "xml2", - "yaml" - ], - "Hash": "16fa15449c930bf3a7761d3c68f8abf9" - }, - "pkgload": { - "Package": "pkgload", - "Version": "1.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "crayon", - "desc", - "fs", - "glue", - "methods", - "rlang", - "rprojroot", - "utils", - "withr" - ], - "Hash": "6b0c222c5071efe0f3baf3dae9aa40e2" - }, - "praise": { - "Package": "praise", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "a555924add98c99d2f411e37e7d25e9f" - }, - "prettyunits": { - "Package": "prettyunits", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "95ef9167b75dde9d2ccc3c7528393e7e" - }, - "processx": { - "Package": "processx", - "Version": "3.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "ps", - "utils" - ], - "Hash": "a33ee2d9bf07564efb888ad98410da84" - }, - "profvis": { - "Package": "profvis", - "Version": "0.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "htmlwidgets", - "stringr" - ], - "Hash": "e9d21e79848e02e524bea6f5bd53e7e4" - }, - "progress": { - "Package": "progress", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "crayon", - "hms", - "prettyunits" - ], - "Hash": "14dc9f7a3c91ebb14ec5bb9208a07061" - }, - "promises": { - "Package": "promises", - "Version": "1.2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "Rcpp", - "later", - "magrittr", - "rlang", - "stats" - ], - "Hash": "4ab2c43adb4d4699cf3690acd378d75d" - }, - "ps": { - "Package": "ps", - "Version": "1.7.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "68dd03d98a5efd1eb3012436de45ba83" - }, - "purrr": { - "Package": "purrr", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "lifecycle", - "magrittr", - "rlang", - "vctrs" - ], - "Hash": "d71c815267c640f17ddbf7f16144b4bb" - }, - "ragg": { - "Package": "ragg", - "Version": "1.2.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "systemfonts", - "textshaping" - ], - "Hash": "690bc058ea2b1b8a407d3cfe3dce3ef9" - }, - "rappdirs": { - "Package": "rappdirs", - "Version": "0.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "5e3c5dc0b071b21fa128676560dbe94d" - }, - "rcmdcheck": { - "Package": "rcmdcheck", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "callr", - "cli", - "curl", - "desc", - "digest", - "pkgbuild", - "prettyunits", - "rprojroot", - "sessioninfo", - "utils", - "withr", - "xopen" - ], - "Hash": "8f25ebe2ec38b1f2aef3b0d2ef76f6c4" - }, - "readxl": { - "Package": "readxl", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cellranger", - "cpp11", - "progress", - "tibble", - "utils" - ], - "Hash": "2e6020b1399d95f947ed867045e9ca17" - }, - "rematch": { - "Package": "rematch", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c66b930d20bb6d858cd18e1cebcfae5c" - }, - "rematch2": { - "Package": "rematch2", - "Version": "2.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tibble" - ], - "Hash": "76c9e04c712a05848ae7a23d2f170a40" - }, - "remotes": { - "Package": "remotes", - "Version": "2.4.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "63d15047eb239f95160112bcadc4fcb9" - }, - "renv": { - "Package": "renv", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "c321cd99d56443dbffd1c9e673c0c1a2" - }, - "rex": { - "Package": "rex", - "Version": "1.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "lazyeval" - ], - "Hash": "ae34cd56890607370665bee5bd17812f" - }, - "rlang": { - "Package": "rlang", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "dc079ccd156cde8647360f473c1fa718" - }, - "rmarkdown": { - "Package": "rmarkdown", - "Version": "2.20", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "evaluate", - "htmltools", - "jquerylib", - "jsonlite", - "knitr", - "methods", - "stringr", - "tinytex", - "tools", - "utils", - "xfun", - "yaml" - ], - "Hash": "716fde5382293cc94a71f68c85b78d19" - }, - "roxygen2": { - "Package": "roxygen2", - "Version": "7.2.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brew", - "cli", - "commonmark", - "cpp11", - "desc", - "knitr", - "methods", - "pkgload", - "purrr", - "rlang", - "stringi", - "stringr", - "utils", - "withr", - "xml2" - ], - "Hash": "7b153c746193b143c14baa072bae4e27" - }, - "rprojroot": { - "Package": "rprojroot", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "1de7ab598047a87bba48434ba35d497d" - }, - "rstudioapi": { - "Package": "rstudioapi", - "Version": "0.14", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "690bd2acc42a9166ce34845884459320" - }, - "rversions": { - "Package": "rversions", - "Version": "2.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "curl", - "utils", - "xml2" - ], - "Hash": "a9881dfed103e83f9de151dc17002cd1" - }, - "sass": { - "Package": "sass", - "Version": "0.4.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "fs", - "htmltools", - "rappdirs", - "rlang" - ], - "Hash": "2bb4371a4c80115518261866eab6ab11" - }, - "sessioninfo": { - "Package": "sessioninfo", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "tools", - "utils" - ], - "Hash": "3f9796a8d0a0e8c6eb49a4b029359d1f" - }, - "shiny": { - "Package": "shiny", - "Version": "1.7.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "bslib", - "cachem", - "commonmark", - "crayon", - "ellipsis", - "fastmap", - "fontawesome", - "glue", - "grDevices", - "htmltools", - "httpuv", - "jsonlite", - "later", - "lifecycle", - "methods", - "mime", - "promises", - "rlang", - "sourcetools", - "tools", - "utils", - "withr", - "xtable" - ], - "Hash": "c2eae3d8c670fa9dfa35a12066f4a1d5" - }, - "sourcetools": { - "Package": "sourcetools", - "Version": "0.1.7-1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "5f5a7629f956619d519205ec475fe647" - }, - "spelling": { - "Package": "spelling", - "Version": "2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "commonmark", - "hunspell", - "knitr", - "xml2" - ], - "Hash": "b8c899a5c83f0d897286550481c91798" - }, - "staged.dependencies": { - "Package": "staged.dependencies", - "Version": "0.3.1", - "Source": "GitHub", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteUsername": "openpharma", - "RemoteRepo": "staged.dependencies", - "RemoteRef": "main", - "RemoteSha": "1ab184a029bef8839a57bb6acd1c5c919cf1fd89", - "Requirements": [ - "desc", - "devtools", - "digest", - "dplyr", - "fs", - "git2r", - "glue", - "httr", - "jsonlite", - "methods", - "rcmdcheck", - "remotes", - "rlang", - "stats", - "tidyr", - "utils", - "withr", - "yaml" - ], - "Hash": "ea298f9fb221a8c7ca4c9e55e9c29b48" - }, - "stringi": { - "Package": "stringi", - "Version": "1.7.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "tools", - "utils" - ], - "Hash": "ca8bd84263c77310739d2cf64d84d7c9" - }, - "stringr": { - "Package": "stringr", - "Version": "1.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "magrittr", - "rlang", - "stringi", - "vctrs" - ], - "Hash": "671a4d384ae9d32fc47a14e98bfa3dc8" - }, - "styler": { - "Package": "styler", - "Version": "1.9.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.cache", - "cli", - "magrittr", - "purrr", - "rlang", - "rprojroot", - "tools", - "vctrs", - "withr" - ], - "Hash": "ed8c90822b7da46beee603f263a85fe0" - }, - "sys": { - "Package": "sys", - "Version": "3.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "34c16f1ef796057bfa06d3f4ff818a5d" - }, - "systemfonts": { - "Package": "systemfonts", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "90b28393209827327de889f49935140a" - }, - "testthat": { - "Package": "testthat", - "Version": "3.1.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brio", - "callr", - "cli", - "desc", - "digest", - "ellipsis", - "evaluate", - "jsonlite", - "lifecycle", - "magrittr", - "methods", - "pkgload", - "praise", - "processx", - "ps", - "rlang", - "utils", - "waldo", - "withr" - ], - "Hash": "7eb5fd202a61d2fb78af5869b6c08998" - }, - "textshaping": { - "Package": "textshaping", - "Version": "0.3.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "systemfonts" - ], - "Hash": "1ab6223d3670fac7143202cb6a2d43d5" - }, - "tibble": { - "Package": "tibble", - "Version": "3.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "fansi", - "lifecycle", - "magrittr", - "methods", - "pillar", - "pkgconfig", - "rlang", - "utils", - "vctrs" - ], - "Hash": "37695ff125982007d42a59ad10982ff2" - }, - "tidyr": { - "Package": "tidyr", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "cpp11", - "dplyr", - "glue", - "lifecycle", - "magrittr", - "purrr", - "rlang", - "stringr", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "e47debdc7ce599b070c8e78e8ac0cfcf" - }, - "tidyselect": { - "Package": "tidyselect", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang", - "vctrs", - "withr" - ], - "Hash": "79540e5fcd9e0435af547d885f184fd5" - }, - "timechange": { - "Package": "timechange", - "Version": "0.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "8548b44f79a35ba1791308b61e6012d7" - }, - "tinytex": { - "Package": "tinytex", - "Version": "0.44", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "xfun" - ], - "Hash": "c0f007e2eeed7722ce13d42b84a22e07" - }, - "urlchecker": { - "Package": "urlchecker", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "curl", - "tools", - "xml2" - ], - "Hash": "409328b8e1253c8d729a7836fe7f7a16" - }, - "usethis": { - "Package": "usethis", - "Version": "2.1.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "clipr", - "crayon", - "curl", - "desc", - "fs", - "gert", - "gh", - "glue", - "jsonlite", - "lifecycle", - "purrr", - "rappdirs", - "rlang", - "rprojroot", - "rstudioapi", - "stats", - "utils", - "whisker", - "withr", - "yaml" - ], - "Hash": "a67a22c201832b12c036cc059f1d137d" - }, - "utf8": { - "Package": "utf8", - "Version": "1.2.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "1fe17157424bb09c48a8b3b550c753bc" - }, - "vctrs": { - "Package": "vctrs", - "Version": "0.6.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang" - ], - "Hash": "7e877404388794361277be95d8445de8" - }, - "waldo": { - "Package": "waldo", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "diffobj", - "fansi", - "glue", - "methods", - "rematch2", - "rlang", - "tibble" - ], - "Hash": "035fba89d0c86e2113120f93301b98ad" - }, - "whisker": { - "Package": "whisker", - "Version": "0.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c6abfa47a46d281a7d5159d0a8891e88" - }, - "withr": { - "Package": "withr", - "Version": "2.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], - "Hash": "c0e49a9760983e81e55cdd9be92e7182" - }, - "xfun": { - "Package": "xfun", - "Version": "0.37", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "stats", - "tools" - ], - "Hash": "a6860e1400a8fd1ddb6d9b4230cc34ab" - }, - "xml2": { - "Package": "xml2", - "Version": "1.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "40682ed6a969ea5abfd351eb67833adc" - }, - "xmlparsedata": { - "Package": "xmlparsedata", - "Version": "1.0.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "45e4bf3c46476896e821fc0a408fb4fc" - }, - "xopen": { - "Package": "xopen", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "processx" - ], - "Hash": "6c85f015dee9cc7710ddd20f86881f58" - }, - "xtable": { - "Package": "xtable", - "Version": "1.8-4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "utils" - ], - "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2" - }, - "yaml": { - "Package": "yaml", - "Version": "2.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "0d0056cc5383fbc240ccd0cb584bf436" - }, - "zip": { - "Package": "zip", - "Version": "2.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c42bfcec3fa6a0cce17ce1f8bc684f88" - } - } -} diff --git a/renv/profiles/4.2/renv/.gitignore b/renv/profiles/4.2/renv/.gitignore deleted file mode 100644 index 0ec0cbba..00000000 --- a/renv/profiles/4.2/renv/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -library/ -local/ -cellar/ -lock/ -python/ -sandbox/ -staging/ diff --git a/renv/profiles/4.2/renv/settings.json b/renv/profiles/4.2/renv/settings.json deleted file mode 100644 index 4922677e..00000000 --- a/renv/profiles/4.2/renv/settings.json +++ /dev/null @@ -1,25 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [ - "admiral", - "admiraldev", - "admiral.test", - "admiralci", - "pharmaversesdtm" - ], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": null, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "custom", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -} diff --git a/renv/profiles/4.3/renv.lock b/renv/profiles/4.3/renv.lock deleted file mode 100644 index 1ce40dba..00000000 --- a/renv/profiles/4.3/renv.lock +++ /dev/null @@ -1,1785 +0,0 @@ -{ - "R": { - "Version": "4.3.1", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://packagemanager.posit.co/cran/latest" - }, - { - "Name": "RSPM", - "URL": "https://packagemanager.posit.co/cran/2023-04-20" - } - ] - }, - "Packages": { - "DT": { - "Package": "DT", - "Version": "0.27", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "crosstalk", - "htmltools", - "htmlwidgets", - "jquerylib", - "jsonlite", - "magrittr", - "promises" - ], - "Hash": "3444e6ed78763f9f13aaa39f2481eb34" - }, - "R.cache": { - "Package": "R.cache", - "Version": "0.16.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "R.utils", - "digest", - "utils" - ], - "Hash": "fe539ca3f8efb7410c3ae2cf5fe6c0f8" - }, - "R.methodsS3": { - "Package": "R.methodsS3", - "Version": "1.8.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "278c286fd6e9e75d0c2e8f731ea445c8" - }, - "R.oo": { - "Package": "R.oo", - "Version": "1.25.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "methods", - "utils" - ], - "Hash": "a0900a114f4f0194cf4aa8cd4a700681" - }, - "R.utils": { - "Package": "R.utils", - "Version": "2.12.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "methods", - "tools", - "utils" - ], - "Hash": "325f01db13da12c04d8f6e7be36ff514" - }, - "R6": { - "Package": "R6", - "Version": "2.5.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "470851b6d5d0ac559e9d01bb352b4021" - }, - "Rcpp": { - "Package": "Rcpp", - "Version": "1.0.10", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods", - "utils" - ], - "Hash": "e749cae40fa9ef469b6050959517453c" - }, - "askpass": { - "Package": "askpass", - "Version": "1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "sys" - ], - "Hash": "e8a22846fff485f0be3770c2da758713" - }, - "backports": { - "Package": "backports", - "Version": "1.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "c39fbec8a30d23e721980b8afb31984c" - }, - "base64enc": { - "Package": "base64enc", - "Version": "0.1-3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "543776ae6848fde2f48ff3816d0628bc" - }, - "brew": { - "Package": "brew", - "Version": "1.0-8", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "d69a786e85775b126bddbee185ae6084" - }, - "brio": { - "Package": "brio", - "Version": "1.1.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "976cf154dfb043c012d87cddd8bca363" - }, - "bslib": { - "Package": "bslib", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "base64enc", - "cachem", - "grDevices", - "htmltools", - "jquerylib", - "jsonlite", - "memoise", - "mime", - "rlang", - "sass" - ], - "Hash": "a7fbf03946ad741129dc81098722fca1" - }, - "cachem": { - "Package": "cachem", - "Version": "1.0.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "fastmap", - "rlang" - ], - "Hash": "cda74447c42f529de601fe4d4050daef" - }, - "callr": { - "Package": "callr", - "Version": "3.7.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "processx", - "utils" - ], - "Hash": "9b2191ede20fa29828139b9900922e51" - }, - "cellranger": { - "Package": "cellranger", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rematch", - "tibble" - ], - "Hash": "f61dbaec772ccd2e17705c1e872e9e7c" - }, - "cli": { - "Package": "cli", - "Version": "3.6.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "89e6d8219950eac806ae0c489052048a" - }, - "clipr": { - "Package": "clipr", - "Version": "0.8.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "3f038e5ac7f41d4ac41ce658c85e3042" - }, - "codetools": { - "Package": "codetools", - "Version": "0.2-19", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "c089a619a7fae175d149d89164f8c7d8" - }, - "collections": { - "Package": "collections", - "Version": "0.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "90a0eda114ab0bef170ddbf5ef0cd93f" - }, - "commonmark": { - "Package": "commonmark", - "Version": "1.9.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "d691c61bff84bd63c383874d2d0c3307" - }, - "covr": { - "Package": "covr", - "Version": "3.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "digest", - "httr", - "jsonlite", - "methods", - "rex", - "stats", - "utils", - "withr", - "yaml" - ], - "Hash": "a0d8f9a55add5311d48227b6f7f38e34" - }, - "cpp11": { - "Package": "cpp11", - "Version": "0.4.3", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "ed588261931ee3be2c700d22e94a29ab" - }, - "crayon": { - "Package": "crayon", - "Version": "1.5.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "methods", - "utils" - ], - "Hash": "e8a1e41acf02548751f45c718d55aa6a" - }, - "credentials": { - "Package": "credentials", - "Version": "1.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "curl", - "jsonlite", - "openssl", - "sys" - ], - "Hash": "93762d0a34d78e6a025efdbfb5c6bb41" - }, - "crosstalk": { - "Package": "crosstalk", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "htmltools", - "jsonlite", - "lazyeval" - ], - "Hash": "6aa54f69598c32177e920eb3402e8293" - }, - "curl": { - "Package": "curl", - "Version": "5.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "e4f97056611e8e6b8b852d13b7400cf1" - }, - "cyclocomp": { - "Package": "cyclocomp", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "callr", - "crayon", - "desc", - "remotes", - "withr" - ], - "Hash": "53cbed70a2f7472d48fb6aef08442f25" - }, - "desc": { - "Package": "desc", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "rprojroot", - "utils" - ], - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21" - }, - "devtools": { - "Package": "devtools", - "Version": "2.4.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "desc", - "ellipsis", - "fs", - "lifecycle", - "memoise", - "miniUI", - "pkgbuild", - "pkgdown", - "pkgload", - "profvis", - "rcmdcheck", - "remotes", - "rlang", - "roxygen2", - "rversions", - "sessioninfo", - "stats", - "testthat", - "tools", - "urlchecker", - "usethis", - "utils", - "withr" - ], - "Hash": "ea5bc8b4a6a01e4f12d98b58329930bb" - }, - "diffdf": { - "Package": "diffdf", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "tibble" - ], - "Hash": "9ddedef46959baad2080047a1b0117fe" - }, - "diffobj": { - "Package": "diffobj", - "Version": "0.3.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "bcaa8b95f8d7d01a5dedfd959ce88ab8" - }, - "digest": { - "Package": "digest", - "Version": "0.6.31", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "8b708f296afd9ae69f450f9640be8990" - }, - "downlit": { - "Package": "downlit", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "brio", - "desc", - "digest", - "evaluate", - "fansi", - "memoise", - "rlang", - "vctrs", - "withr", - "yaml" - ], - "Hash": "79bf3f66590752ffbba20f8d2da94c7c" - }, - "dplyr": { - "Package": "dplyr", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "generics", - "glue", - "lifecycle", - "magrittr", - "methods", - "pillar", - "rlang", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "eb5742d256a0d9306d85ea68756d8187" - }, - "ellipsis": { - "Package": "ellipsis", - "Version": "0.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "rlang" - ], - "Hash": "bb0eec2fe32e88d9e2836c2f73ea2077" - }, - "evaluate": { - "Package": "evaluate", - "Version": "0.20", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "4b68aa51edd89a0e044a66e75ae3cc6c" - }, - "fansi": { - "Package": "fansi", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "utils" - ], - "Hash": "1d9e7ad3c8312a192dea7d3db0274fde" - }, - "fastmap": { - "Package": "fastmap", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "f7736a18de97dea803bde0a2daaafb27" - }, - "fontawesome": { - "Package": "fontawesome", - "Version": "0.5.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "htmltools", - "rlang" - ], - "Hash": "1e22b8cabbad1eae951a75e9f8b52378" - }, - "fs": { - "Package": "fs", - "Version": "1.6.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "f4dcd23b67e33d851d2079f703e8b985" - }, - "generics": { - "Package": "generics", - "Version": "0.1.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "15e9634c0fcd294799e9b2e929ed1b86" - }, - "gert": { - "Package": "gert", - "Version": "1.9.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass", - "credentials", - "openssl", - "rstudioapi", - "sys", - "zip" - ], - "Hash": "9122b3958e749badb5c939f498038b57" - }, - "gh": { - "Package": "gh", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "gitcreds", - "httr2", - "ini", - "jsonlite", - "rlang" - ], - "Hash": "03533b1c875028233598f848fda44c4c" - }, - "git2r": { - "Package": "git2r", - "Version": "0.32.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "graphics", - "utils" - ], - "Hash": "1882d7a76fd8c14b2322865f74c9a348" - }, - "gitcreds": { - "Package": "gitcreds", - "Version": "0.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "ab08ac61f3e1be454ae21911eb8bc2fe" - }, - "glue": { - "Package": "glue", - "Version": "1.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e" - }, - "highr": { - "Package": "highr", - "Version": "0.10", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "xfun" - ], - "Hash": "06230136b2d2b9ba5805e1963fa6e890" - }, - "hms": { - "Package": "hms", - "Version": "1.1.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "lifecycle", - "methods", - "pkgconfig", - "rlang", - "vctrs" - ], - "Hash": "b59377caa7ed00fa41808342002138f9" - }, - "htmltools": { - "Package": "htmltools", - "Version": "0.5.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "base64enc", - "digest", - "ellipsis", - "fastmap", - "grDevices", - "rlang", - "utils" - ], - "Hash": "ba0240784ad50a62165058a27459304a" - }, - "htmlwidgets": { - "Package": "htmlwidgets", - "Version": "1.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "htmltools", - "jsonlite", - "knitr", - "rmarkdown", - "yaml" - ], - "Hash": "a865aa85bcb2697f47505bfd70422471" - }, - "httpuv": { - "Package": "httpuv", - "Version": "1.6.9", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "Rcpp", - "later", - "promises", - "utils" - ], - "Hash": "1046aa31a57eae8b357267a56a0b6d8b" - }, - "httr": { - "Package": "httr", - "Version": "1.4.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "curl", - "jsonlite", - "mime", - "openssl" - ], - "Hash": "f6844033201269bec3ca0097bc6c97b3" - }, - "httr2": { - "Package": "httr2", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "cli", - "curl", - "glue", - "magrittr", - "openssl", - "rappdirs", - "rlang", - "withr" - ], - "Hash": "5c09fe33064978ede54de42309c8b532" - }, - "hunspell": { - "Package": "hunspell", - "Version": "3.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "Rcpp", - "digest" - ], - "Hash": "656219b6f3f605499d7cdbe208656639" - }, - "ini": { - "Package": "ini", - "Version": "0.3.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "6154ec2223172bce8162d4153cda21f7" - }, - "jquerylib": { - "Package": "jquerylib", - "Version": "0.1.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools" - ], - "Hash": "5aab57a3bd297eee1c1d862735972182" - }, - "jsonlite": { - "Package": "jsonlite", - "Version": "1.8.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "methods" - ], - "Hash": "a4269a09a9b865579b2635c77e572374" - }, - "knitr": { - "Package": "knitr", - "Version": "1.42", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "evaluate", - "highr", - "methods", - "tools", - "xfun", - "yaml" - ], - "Hash": "8329a9bcc82943c8069104d4be3ee22d" - }, - "languageserver": { - "Package": "languageserver", - "Version": "0.3.15", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "collections", - "fs", - "jsonlite", - "lintr", - "parallel", - "roxygen2", - "stringi", - "styler", - "tools", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "fbea0dd12b4f5dedbe3654e4b9cbbddc" - }, - "later": { - "Package": "later", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "Rcpp", - "rlang" - ], - "Hash": "7e7b457d7766bc47f2a5f21cc2984f8e" - }, - "lazyeval": { - "Package": "lazyeval", - "Version": "0.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "d908914ae53b04d4c0c0fd72ecc35370" - }, - "lifecycle": { - "Package": "lifecycle", - "Version": "1.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "rlang" - ], - "Hash": "001cecbeac1cff9301bdc3775ee46a86" - }, - "lintr": { - "Package": "lintr", - "Version": "3.0.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "backports", - "codetools", - "crayon", - "cyclocomp", - "digest", - "glue", - "jsonlite", - "knitr", - "rex", - "stats", - "utils", - "xml2", - "xmlparsedata" - ], - "Hash": "b21ebd652d940f099915221f3328ab7b" - }, - "lubridate": { - "Package": "lubridate", - "Version": "1.9.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "generics", - "methods", - "timechange" - ], - "Hash": "e25f18436e3efd42c7c590a1c4c15390" - }, - "magrittr": { - "Package": "magrittr", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "7ce2733a9826b3aeb1775d56fd305472" - }, - "memoise": { - "Package": "memoise", - "Version": "2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cachem", - "rlang" - ], - "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c" - }, - "mime": { - "Package": "mime", - "Version": "0.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tools" - ], - "Hash": "18e9c28c1d3ca1560ce30658b22ce104" - }, - "miniUI": { - "Package": "miniUI", - "Version": "0.1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "htmltools", - "shiny", - "utils" - ], - "Hash": "fec5f52652d60615fdb3957b3d74324a" - }, - "openssl": { - "Package": "openssl", - "Version": "2.0.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "askpass" - ], - "Hash": "0f7cd2962e3044bb940cca4f4b5cecbe" - }, - "pillar": { - "Package": "pillar", - "Version": "1.9.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "fansi", - "glue", - "lifecycle", - "rlang", - "utf8", - "utils", - "vctrs" - ], - "Hash": "15da5a8412f317beeee6175fbc76f4bb" - }, - "pkgbuild": { - "Package": "pkgbuild", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "callr", - "cli", - "crayon", - "desc", - "prettyunits", - "processx", - "rprojroot", - "withr" - ], - "Hash": "d6c3008d79653a0f267703288230105e" - }, - "pkgconfig": { - "Package": "pkgconfig", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "01f28d4278f15c76cddbea05899c5d6f" - }, - "pkgdown": { - "Package": "pkgdown", - "Version": "2.0.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "callr", - "cli", - "desc", - "digest", - "downlit", - "fs", - "httr", - "jsonlite", - "magrittr", - "memoise", - "purrr", - "ragg", - "rlang", - "rmarkdown", - "tibble", - "whisker", - "withr", - "xml2", - "yaml" - ], - "Hash": "16fa15449c930bf3a7761d3c68f8abf9" - }, - "pkgload": { - "Package": "pkgload", - "Version": "1.3.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "crayon", - "desc", - "fs", - "glue", - "methods", - "rlang", - "rprojroot", - "utils", - "withr" - ], - "Hash": "6b0c222c5071efe0f3baf3dae9aa40e2" - }, - "praise": { - "Package": "praise", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "a555924add98c99d2f411e37e7d25e9f" - }, - "prettyunits": { - "Package": "prettyunits", - "Version": "1.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "95ef9167b75dde9d2ccc3c7528393e7e" - }, - "processx": { - "Package": "processx", - "Version": "3.8.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "ps", - "utils" - ], - "Hash": "d75b4059d781336efba24021915902b4" - }, - "profvis": { - "Package": "profvis", - "Version": "0.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "htmlwidgets", - "stringr" - ], - "Hash": "e9d21e79848e02e524bea6f5bd53e7e4" - }, - "progress": { - "Package": "progress", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "crayon", - "hms", - "prettyunits" - ], - "Hash": "14dc9f7a3c91ebb14ec5bb9208a07061" - }, - "promises": { - "Package": "promises", - "Version": "1.2.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "Rcpp", - "later", - "magrittr", - "rlang", - "stats" - ], - "Hash": "4ab2c43adb4d4699cf3690acd378d75d" - }, - "ps": { - "Package": "ps", - "Version": "1.7.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "709d852d33178db54b17c722e5b1e594" - }, - "purrr": { - "Package": "purrr", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "lifecycle", - "magrittr", - "rlang", - "vctrs" - ], - "Hash": "d71c815267c640f17ddbf7f16144b4bb" - }, - "ragg": { - "Package": "ragg", - "Version": "1.2.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "systemfonts", - "textshaping" - ], - "Hash": "690bc058ea2b1b8a407d3cfe3dce3ef9" - }, - "rappdirs": { - "Package": "rappdirs", - "Version": "0.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "5e3c5dc0b071b21fa128676560dbe94d" - }, - "rcmdcheck": { - "Package": "rcmdcheck", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "callr", - "cli", - "curl", - "desc", - "digest", - "pkgbuild", - "prettyunits", - "rprojroot", - "sessioninfo", - "utils", - "withr", - "xopen" - ], - "Hash": "8f25ebe2ec38b1f2aef3b0d2ef76f6c4" - }, - "readxl": { - "Package": "readxl", - "Version": "1.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cellranger", - "cpp11", - "progress", - "tibble", - "utils" - ], - "Hash": "2e6020b1399d95f947ed867045e9ca17" - }, - "rematch": { - "Package": "rematch", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c66b930d20bb6d858cd18e1cebcfae5c" - }, - "rematch2": { - "Package": "rematch2", - "Version": "2.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "tibble" - ], - "Hash": "76c9e04c712a05848ae7a23d2f170a40" - }, - "remotes": { - "Package": "remotes", - "Version": "2.4.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods", - "stats", - "tools", - "utils" - ], - "Hash": "63d15047eb239f95160112bcadc4fcb9" - }, - "renv": { - "Package": "renv", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "utils" - ], - "Hash": "c321cd99d56443dbffd1c9e673c0c1a2" - }, - "rex": { - "Package": "rex", - "Version": "1.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "lazyeval" - ], - "Hash": "ae34cd56890607370665bee5bd17812f" - }, - "rlang": { - "Package": "rlang", - "Version": "1.1.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "utils" - ], - "Hash": "dc079ccd156cde8647360f473c1fa718" - }, - "rmarkdown": { - "Package": "rmarkdown", - "Version": "2.21", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "bslib", - "evaluate", - "fontawesome", - "htmltools", - "jquerylib", - "jsonlite", - "knitr", - "methods", - "stringr", - "tinytex", - "tools", - "utils", - "xfun", - "yaml" - ], - "Hash": "493df4ae51e2e984952ea4d5c75786a3" - }, - "roxygen2": { - "Package": "roxygen2", - "Version": "7.2.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brew", - "cli", - "commonmark", - "cpp11", - "desc", - "knitr", - "methods", - "pkgload", - "purrr", - "rlang", - "stringi", - "stringr", - "utils", - "withr", - "xml2" - ], - "Hash": "7b153c746193b143c14baa072bae4e27" - }, - "rprojroot": { - "Package": "rprojroot", - "Version": "2.0.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "1de7ab598047a87bba48434ba35d497d" - }, - "rstudioapi": { - "Package": "rstudioapi", - "Version": "0.14", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "690bd2acc42a9166ce34845884459320" - }, - "rversions": { - "Package": "rversions", - "Version": "2.1.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "curl", - "utils", - "xml2" - ], - "Hash": "a9881dfed103e83f9de151dc17002cd1" - }, - "sass": { - "Package": "sass", - "Version": "0.4.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "fs", - "htmltools", - "rappdirs", - "rlang" - ], - "Hash": "2bb4371a4c80115518261866eab6ab11" - }, - "sessioninfo": { - "Package": "sessioninfo", - "Version": "1.2.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "tools", - "utils" - ], - "Hash": "3f9796a8d0a0e8c6eb49a4b029359d1f" - }, - "shiny": { - "Package": "shiny", - "Version": "1.7.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "bslib", - "cachem", - "commonmark", - "crayon", - "ellipsis", - "fastmap", - "fontawesome", - "glue", - "grDevices", - "htmltools", - "httpuv", - "jsonlite", - "later", - "lifecycle", - "methods", - "mime", - "promises", - "rlang", - "sourcetools", - "tools", - "utils", - "withr", - "xtable" - ], - "Hash": "c2eae3d8c670fa9dfa35a12066f4a1d5" - }, - "sourcetools": { - "Package": "sourcetools", - "Version": "0.1.7-1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "5f5a7629f956619d519205ec475fe647" - }, - "spelling": { - "Package": "spelling", - "Version": "2.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "commonmark", - "hunspell", - "knitr", - "xml2" - ], - "Hash": "8ed9f010f7caeb8586523088b7f23dcd" - }, - "staged.dependencies": { - "Package": "staged.dependencies", - "Version": "0.3.1", - "Source": "GitHub", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteUsername": "openpharma", - "RemoteRepo": "staged.dependencies", - "RemoteRef": "main", - "RemoteSha": "1ab184a029bef8839a57bb6acd1c5c919cf1fd89", - "Requirements": [ - "desc", - "devtools", - "digest", - "dplyr", - "fs", - "git2r", - "glue", - "httr", - "jsonlite", - "methods", - "rcmdcheck", - "remotes", - "rlang", - "stats", - "tidyr", - "utils", - "withr", - "yaml" - ], - "Hash": "ea298f9fb221a8c7ca4c9e55e9c29b48" - }, - "stringi": { - "Package": "stringi", - "Version": "1.7.12", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "tools", - "utils" - ], - "Hash": "ca8bd84263c77310739d2cf64d84d7c9" - }, - "stringr": { - "Package": "stringr", - "Version": "1.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "magrittr", - "rlang", - "stringi", - "vctrs" - ], - "Hash": "671a4d384ae9d32fc47a14e98bfa3dc8" - }, - "styler": { - "Package": "styler", - "Version": "1.9.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.cache", - "cli", - "magrittr", - "purrr", - "rlang", - "rprojroot", - "tools", - "vctrs", - "withr" - ], - "Hash": "ed8c90822b7da46beee603f263a85fe0" - }, - "sys": { - "Package": "sys", - "Version": "3.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "34c16f1ef796057bfa06d3f4ff818a5d" - }, - "systemfonts": { - "Package": "systemfonts", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "90b28393209827327de889f49935140a" - }, - "testthat": { - "Package": "testthat", - "Version": "3.1.7", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "brio", - "callr", - "cli", - "desc", - "digest", - "ellipsis", - "evaluate", - "jsonlite", - "lifecycle", - "magrittr", - "methods", - "pkgload", - "praise", - "processx", - "ps", - "rlang", - "utils", - "waldo", - "withr" - ], - "Hash": "7eb5fd202a61d2fb78af5869b6c08998" - }, - "textshaping": { - "Package": "textshaping", - "Version": "0.3.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "systemfonts" - ], - "Hash": "1ab6223d3670fac7143202cb6a2d43d5" - }, - "tibble": { - "Package": "tibble", - "Version": "3.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "fansi", - "lifecycle", - "magrittr", - "methods", - "pillar", - "pkgconfig", - "rlang", - "utils", - "vctrs" - ], - "Hash": "a84e2cc86d07289b3b6f5069df7a004c" - }, - "tidyr": { - "Package": "tidyr", - "Version": "1.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "cpp11", - "dplyr", - "glue", - "lifecycle", - "magrittr", - "purrr", - "rlang", - "stringr", - "tibble", - "tidyselect", - "utils", - "vctrs" - ], - "Hash": "e47debdc7ce599b070c8e78e8ac0cfcf" - }, - "tidyselect": { - "Package": "tidyselect", - "Version": "1.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang", - "vctrs", - "withr" - ], - "Hash": "79540e5fcd9e0435af547d885f184fd5" - }, - "timechange": { - "Package": "timechange", - "Version": "0.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "8548b44f79a35ba1791308b61e6012d7" - }, - "tinytex": { - "Package": "tinytex", - "Version": "0.45", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "xfun" - ], - "Hash": "e4e357f28c2edff493936b6cb30c3d65" - }, - "urlchecker": { - "Package": "urlchecker", - "Version": "1.0.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "curl", - "tools", - "xml2" - ], - "Hash": "409328b8e1253c8d729a7836fe7f7a16" - }, - "usethis": { - "Package": "usethis", - "Version": "2.1.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "clipr", - "crayon", - "curl", - "desc", - "fs", - "gert", - "gh", - "glue", - "jsonlite", - "lifecycle", - "purrr", - "rappdirs", - "rlang", - "rprojroot", - "rstudioapi", - "stats", - "utils", - "whisker", - "withr", - "yaml" - ], - "Hash": "a67a22c201832b12c036cc059f1d137d" - }, - "utf8": { - "Package": "utf8", - "Version": "1.2.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "1fe17157424bb09c48a8b3b550c753bc" - }, - "vctrs": { - "Package": "vctrs", - "Version": "0.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang" - ], - "Hash": "a745bda7aff4734c17294bb41d4e4607" - }, - "waldo": { - "Package": "waldo", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "cli", - "diffobj", - "fansi", - "glue", - "methods", - "rematch2", - "rlang", - "tibble" - ], - "Hash": "035fba89d0c86e2113120f93301b98ad" - }, - "whisker": { - "Package": "whisker", - "Version": "0.4.1", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "c6abfa47a46d281a7d5159d0a8891e88" - }, - "withr": { - "Package": "withr", - "Version": "2.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], - "Hash": "c0e49a9760983e81e55cdd9be92e7182" - }, - "xfun": { - "Package": "xfun", - "Version": "0.38", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "stats", - "tools" - ], - "Hash": "1ed71215d45e85562d3b1b29a068ccec" - }, - "xml2": { - "Package": "xml2", - "Version": "1.3.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "methods" - ], - "Hash": "40682ed6a969ea5abfd351eb67833adc" - }, - "xmlparsedata": { - "Package": "xmlparsedata", - "Version": "1.0.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "45e4bf3c46476896e821fc0a408fb4fc" - }, - "xopen": { - "Package": "xopen", - "Version": "1.0.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "processx" - ], - "Hash": "6c85f015dee9cc7710ddd20f86881f58" - }, - "xtable": { - "Package": "xtable", - "Version": "1.8-4", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "stats", - "utils" - ], - "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2" - }, - "yaml": { - "Package": "yaml", - "Version": "2.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "0d0056cc5383fbc240ccd0cb584bf436" - }, - "zip": { - "Package": "zip", - "Version": "2.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "d98c94dacb7e0efcf83b0a133a705504" - } - } -} diff --git a/renv/profiles/4.3/renv/.gitignore b/renv/profiles/4.3/renv/.gitignore deleted file mode 100644 index 0ec0cbba..00000000 --- a/renv/profiles/4.3/renv/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -library/ -local/ -cellar/ -lock/ -python/ -sandbox/ -staging/ diff --git a/renv/profiles/4.3/renv/settings.json b/renv/profiles/4.3/renv/settings.json deleted file mode 100644 index 4922677e..00000000 --- a/renv/profiles/4.3/renv/settings.json +++ /dev/null @@ -1,25 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [ - "admiral", - "admiraldev", - "admiral.test", - "admiralci", - "pharmaversesdtm" - ], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": null, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "custom", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -} diff --git a/renv/settings.json b/renv/settings.json deleted file mode 100644 index 3462f3b0..00000000 --- a/renv/settings.json +++ /dev/null @@ -1,24 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [ - "admiral", - "admiraldev", - "admiral.test", - "admiralci" - ], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": null, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "custom", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -}