From febf26462c60884d134794bf79a17b6b933c1594 Mon Sep 17 00:00:00 2001 From: Edoardo Mancini <53403957+manciniedoardo@users.noreply.github.com> Date: Fri, 8 Sep 2023 21:18:42 +0100 Subject: [PATCH] #1995 Update to add Sophie as Author and Stefan's R in Pharma presentation. (#2082) * #1995 Update to add Sophie as Autor and Stefan's R in Pharma presentation. * #1995 Chore: roxygen * #1995 chore:spellcheck and roxygen * #1995 updates to readme with release schedule and 1.0. * grammar fix in readme --------- Co-authored-by: Ben Straub Co-authored-by: Zelos Zhu --- DESCRIPTION | 6 +----- README.md | 36 ++++++++++++++++++++++++------------ inst/WORDLIST | 6 ++++++ man/admiral-package.Rd | 6 +----- 4 files changed, 32 insertions(+), 22 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 80bfc5edfc..5f9482beab 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -13,16 +13,12 @@ Authors@R: c( person("Edoardo", "Mancini", role = "aut"), person("Sadchla", "Mascary", role = "aut"), person("Gordon", "Miller", role = "aut"), + person("Sophie", "Shapcott", role = "aut"), person("Eric", "Simms", role = "aut"), person("Stefan", "Thoma", role = "aut"), person("Kangjie", "Zhang", role = "aut"), person("Zelos", "Zhu", role = "aut"), - person("Kamila", "Duniec", role = "ctb"), person("G", "Gayatri", role = "ctb"), - person("Declan", "Hodges", role = "ctb"), - person("Robin", "Koeger", role = "ctb"), - person("Pooja", "Kumari", role = "ctb"), - person("Shan", "Lee", role = "ctb"), person("Thomas", "Neitmann", role = "ctb"), person("F. Hoffmann-La Roche AG", role = c("cph", "fnd")), person("GlaxoSmithKline LLC", role = c("cph", "fnd")) diff --git a/README.md b/README.md index 8966105984..c9c96596ec 100644 --- a/README.md +++ b/README.md @@ -37,20 +37,25 @@ remotes::install_github("pharmaverse/admiral") The {admiral} family has several downstream and upstream dependencies and so this release shall be done in three Phases: -* Phase 1 release is for [{admiraldev}](https://pharmaverse.github.io/admiraldev/main/), {pharmaversesdtm}, and [{admiral}](https://pharmaverse.github.io/admiral/cran-release/) core +* Phase 1 release is for [{admiraldev}](https://pharmaverse.github.io/admiraldev/main/), [{pharmaversesdtm}](https://pharmaverse.github.io/pharmaversesdtm/main/), and [{admiral}](https://pharmaverse.github.io/admiral/cran-release/) core * Phase 2 release is extension packages, e.g. [{admiralonco}](https://pharmaverse.github.io/admiralonco/main/), [{admiralophtha}](https://pharmaverse.github.io/admiralophtha/main/), [{admiralvaccine}](https://pharmaverse.github.io/admiralvaccine/main/) -|Release Schedule | Phase 1- Date and Packages | Phase 2- Date and Packages | -|---------------- | -------------------------- | -------------------------- | -| Q3-2023 | September 4th | September 11th | -| | [{admiraldev}](https://pharmaverse.github.io/admiraldev/main/) | [{admiralonco}](https://pharmaverse.github.io/admiralonco/main/) | -| | {pharmaversesdtm} | [{admiralophtha}](https://pharmaverse.github.io/admiralophtha/main/) | -| | [{admiral}](https://pharmaverse.github.io/admiral/main/) | [{admiralvaccine}](https://pharmaverse.github.io/admiralvaccine/main/) | -| Q4-2023 | December 4th | December 11th | -| | [{admiraldev}](https://pharmaverse.github.io/admiraldev/main/) | [{admiralonco}](https://pharmaverse.github.io/admiralonco/main/) | -| | {pharmaversesdtm} | [{admiralophtha}](https://pharmaverse.github.io/admiralophtha/main/) | -| | [{admiral}](https://pharmaverse.github.io/admiral/main/) | [{admiralvaccine}](https://pharmaverse.github.io/admiralvaccine/main/) | +|Release Schedule | Phase 1- Date and Packages | Phase 2- Date and Packages | +|---------------- | -------------------------- | -------------------------- | +| Q3-2023 | September 4th | September 18th | +| | [{pharmaversesdtm}](https://pharmaverse.github.io/pharmaversesdtm/main/) | [{admiralonco}](https://pharmaverse.github.io/admiralonco/main/) | +| | | [{admiralophtha}](https://pharmaverse.github.io/admiralophtha/main/) | +| | September 11th | [{admiralvaccine}](https://pharmaverse.github.io/admiralvaccine/main/) | +| | [{admiraldev}](https://pharmaverse.github.io/admiraldev/main/) | | +| | [{admiral}](https://pharmaverse.github.io/admiral/main/) | | +| | | | +| Q4-2023 | December 4th | December 11th | +| | [{pharmaversesdtm}](https://pharmaverse.github.io/pharmaversesdtm/main/) | [{admiralonco}](https://pharmaverse.github.io/admiralonco/main/) | +| | [{admiraldev}](https://pharmaverse.github.io/admiraldev/main/) | [{admiralophtha}](https://pharmaverse.github.io/admiralophtha/main/) | +| | [{admiral}](https://pharmaverse.github.io/admiral/main/) | | + +The `{admiral}` Q4-2023 release will officially be `{admiral}`'s version 1.0.0 release, where we commit to increased package maturity and pivot towards focusing on maintenance rather than new content. This does not mean that there will never be any new content in `{admiral}`, rather it means we will be more mindful about introducing new functionality and/or breaking changes. The release schedule in 2024 and onward will also shift to twice-yearly, rather than quarterly, so that our users have ample time to react to any new content and changes that do make it onto `{admiral}`. ## Main Goal @@ -152,8 +157,15 @@ that all our developers and contributors must follow, so that all our code has a * Please see the [Contribution Model](https://pharmaverse.github.io/admiral/cran-release/articles/contribution_model.html) for how to get involved with making contributions * Please see [FAQ: R and Package Versions](https://pharmaverse.github.io/admiral/cran-release/articles/faq.html#why-do-we-use-a-certain-r-version-and-package-versions-for-development) for why we develop with certain R and package versions. +## Pharmaverse Blog +If you are interested in R and Clinical Reporting, then visit the [pharmaverse blog](https://pharmaverse.github.io/blog/). This contains regular, bite-sized posts showcasing how `{admiral}` and other packages in the pharmaverse can be used to realize the vision of full end-to-end Clinical Reporting in R. + +We are also always looking for keen `{admiral}` users to publish their own blog posts about how they use the package. If this could be you, feel free make an issue in the [GitHub repo](https://github.com/pharmaverse/blog) and get started! + + ## Conference Presentations +* [Cross Industry Package Development](https://www.youtube.com/watch?v=M4L1PPMu0pU) (recording from R in Pharma 2022) * [Paving the way for clinical submissions in R](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/EU/London/PRE_London09.pdf) (slides from PHUSE SDE in London) * [An Overview of {admiral}](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/SDE/US/Summit/PRE_Summit03.pdf) (slides from PHUSE SDE in Summit, NJ) * [{admiralonco}](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/REC_OS12.mp4) (recording for talk at PHUSE US Connect 2023, slides also available [here](https://phuse.s3.eu-central-1.amazonaws.com/Archive/2023/Connect/US/Florida/PRE_OS12.pdf)) @@ -172,4 +184,4 @@ We use the following for support and communications between user and developer c ## Acknowledgments Along with the authors and contributors, thanks to the following people for their work on the package: -Jaxon Abercrombie, Mahdi About, Teckla Akinyi, James Black, Claudia Carlucci, Bill Denney, Alice Ehmann, Ania Golab, Alana Harris, Anthony Howard, Shimeng Huang, Samia Kabi, James Kim, John Kirkpatrick, Leena Khatri, Konstantina Koukourikou, Pavan Kumar, Wenyi Liu, Jack McGavigan, Jordanna Morrish, Syed Mubasheer, Yohann Omnes, Barbara O'Reilly, Hamza Rahal, Nick Ramirez, Tom Ratford, Tamara Senior, Sophie Shapcott, Ondrej Slama, Andrew Smith, Daniil Stefonishin, Vignesh Thanikachalam, Michael Thorpe, Annie Yang, Ojesh Upadhyay and Franciszek Walkowiak. +Jaxon Abercrombie, Mahdi About, Teckla Akinyi, James Black, Claudia Carlucci, Bill Denney, Kamila Duniec, Alice Ehmann, Ania Golab, Alana Harris, Declan Hodges, Anthony Howard, Shimeng Huang, Samia Kabi, James Kim, John Kirkpatrick, Leena Khatri, Robin Koeger, Konstantina Koukourikou, Pavan Kumar, Pooja Kumari, Shan Lee, Wenyi Liu, Jack McGavigan, Jordanna Morrish, Syed Mubasheer, Yohann Omnes, Barbara O'Reilly, Hamza Rahal, Nick Ramirez, Tom Ratford, Tamara Senior, Sophie Shapcott, Ondrej Slama, Andrew Smith, Daniil Stefonishin, Vignesh Thanikachalam, Michael Thorpe, Annie Yang, Ojesh Upadhyay and Franciszek Walkowiak. diff --git a/inst/WORDLIST b/inst/WORDLIST index 4430e58dfa..c8b09c2850 100644 --- a/inst/WORDLIST +++ b/inst/WORDLIST @@ -68,6 +68,7 @@ Creat Creatine Creatinine D'Agostino +Duniec DAIDs DIABP DILI @@ -78,6 +79,7 @@ DTM DURD Datetime Daniil +Declan Denney DuBois Durations @@ -109,6 +111,7 @@ GxP HDL Haptoglobin Hamza +Hodges Hoffmann Hy's Hypercalcemia @@ -128,7 +131,9 @@ INR Jaxon Jordanna Kabi +Kamila Khatri +Koeger Konstantina Koukourikou Kumar @@ -137,6 +142,7 @@ LDL LLC LLOQ LOCF +Lee Leena Leukocytosis Lipase diff --git a/man/admiral-package.Rd b/man/admiral-package.Rd index 229604bca3..96835f9ebf 100644 --- a/man/admiral-package.Rd +++ b/man/admiral-package.Rd @@ -33,6 +33,7 @@ Authors: \item Edoardo Mancini \item Sadchla Mascary \item Gordon Miller + \item Sophie Shapcott \item Eric Simms \item Stefan Thoma \item Kangjie Zhang @@ -41,12 +42,7 @@ Authors: Other contributors: \itemize{ - \item Kamila Duniec [contributor] \item G Gayatri [contributor] - \item Declan Hodges [contributor] - \item Robin Koeger [contributor] - \item Pooja Kumari [contributor] - \item Shan Lee [contributor] \item Thomas Neitmann [contributor] \item F. Hoffmann-La Roche AG [copyright holder, funder] \item GlaxoSmithKline LLC [copyright holder, funder]