From 456e539fcccffa5d055d05e6c3666b670b36ad47 Mon Sep 17 00:00:00 2001
From: Matthew Wells <76452933+mattheww95@users.noreply.github.com>
Date: Wed, 25 Sep 2024 10:22:46 -0500
Subject: [PATCH] updated nextflow schema to lable ectyper arguments as
 integers and not floats (#121)

* updated nextflow schema to lable ectyper arguments as integers and not numbers'

* updated changelog

* updated changelog and patch version
---
 CHANGELOG.md         | 6 +++++-
 nextflow.config      | 2 +-
 nextflow_schema.json | 8 ++++----
 3 files changed, 10 insertions(+), 6 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 687feb60..8e82a777 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,12 +3,14 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## `Unreleased`
+## [0.4.2] - 2024-09-25
 
 ### `Fixed`
 
 - Fixed broken link in readme. [PR 117](https://github.com/phac-nml/mikrokondo/pull/117)
 
+- Fixed ectyper parameter types in the `nextflow_schema.json` from `number` to `integer`. [PR 121](https://github.com/phac-nml/mikrokondo/pull/121)
+
 ## [0.4.1] - 2024-09-16
 
 ### `Fixed`
@@ -162,6 +164,8 @@ Initial release of phac-nml/mikrokondo. Mikrokondo currently supports: read trim
 
 - Added integration testing using [nf-test](https://www.nf-test.com/).
 
+[0.4.2]: https://github.com/phac-nml/mikrokondo/releases/tag/0.4.2
+[0.4.1]: https://github.com/phac-nml/mikrokondo/releases/tag/0.4.1
 [0.4.0]: https://github.com/phac-nml/mikrokondo/releases/tag/0.4.0
 [0.3.0]: https://github.com/phac-nml/mikrokondo/releases/tag/0.3.0
 [0.2.1]: https://github.com/phac-nml/mikrokondo/releases/tag/0.2.1
diff --git a/nextflow.config b/nextflow.config
index e55b2528..7379c296 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -1195,7 +1195,7 @@ manifest {
     description     = """Mikrokondo"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '0.4.1'
+    version         = '0.4.2'
     defaultBranch   = 'main'
     doi             = ''
 }
diff --git a/nextflow_schema.json b/nextflow_schema.json
index 37aef1f5..e059f396 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -444,28 +444,28 @@
             "default": "",
             "properties": {
                 "ec_opid": {
-                    "type": "number",
+                    "type": "integer",
                     "default": 90,
                     "description": "Minimum percent identity to determine O antigens presence",
                     "minimum": 0,
                     "maximum": 100
                 },
                 "ec_opcov": {
-                    "type": "number",
+                    "type": "integer",
                     "default": 90,
                     "description": "Minimum percent coverage of O antigen",
                     "minimum": 0,
                     "maximum": 100
                 },
                 "ec_hpid": {
-                    "type": "number",
+                    "type": "integer",
                     "default": 95,
                     "description": "Miniumum percent identity to determine H antigens presence",
                     "minimum": 0,
                     "maximum": 100
                 },
                 "ec_hpcov": {
-                    "type": "number",
+                    "type": "integer",
                     "default": 50,
                     "description": "Minimum percent coverage of H antigen",
                     "minimum": 0,