ectyper

Code cleanup of ectyper.
MASH sketch to be provided by user.
Base for all future updates, including:

• multi-core support
• additional alleles

conda testing

init.py

For Galaxy, Conda, and command line usage

Merge pull request #48 from phac-nml/merging

Merged branch with all of Sam and Rylan's changes

Release is only for use with superphy/backend

v0.1-alpha

superphy branch