- Allow coloring mismatches by base (thanks @petersbr)
- Make the glyph look better when zoomed out very far
- Fix track height in areas where no alignment data is present
- Fix mouseover clearRect boundaries
- Made subpixel rendering more accurate
- Made it so you can specify full species name in addition to short name, and add colors/tooltips
- Further improve rendering by reducing off-screen rendering
- Add store class optimizations to avoid excessive GC
- Add rendering optimizations to avoid excessive canvas repainting
- Fix bug where it needs to check lower case
- Include ability to draw base pairs
- Include converter from MAF to pseudo-bed format
- Include storeClass that removes gapped alignments in reference (which can't be displayed using ref coord system)