This code is designed to be used on the ALICE cluster at the University of Leicester

##Use on ALICE

Log into ALICE (remember to use the -X option on ssh) and load the following modules

module load python/2.7.9
module load gdal
module load R

Make the code

make

Then submit a job

qsub frp_alice.sub

Once this has finished, run the post processing script

R
source("postproc.r")

Serial profiling

Ensure that you have Cython, GDAL, numpy and scipy available. Type

make

and then

./doprof.py

TODO

In order to be suitable for batch processing of large numbers of images, the following changes must be made:

Write a script to extract the original HDF files to a folder containing all the various images required for processing
In the same script, supply the boundary coordinates in coords.txt in the order minimum-latitude maximum-latitude minimum-longitude maximum-longitude seperated by spaces
Rewrite the submission script frp_alice.sub so that each array process invokes process.py with the path to one of the folders as its sole argument