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NZ_CP059994.json
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{
"cgview": {
"version": "1.1.0",
"created": "2024-11-27 01:01:53",
"id": "NZ_CP092456.1",
"name": "NZ_CP092456.1",
"geneticCode": "11",
"settings": {
"backgroundColor": "white",
"showShading": true,
"arrowHeadLength": 0.3
},
"backbone": {
"thickness": 0.1,
"color": "white",
"colorAlternate": "rgb(200, 200, 200)"
},
"ruler": {
"font": "sans-serif, plain, 10",
"color": "black"
},
"dividers": {
"slot": {
"thickness": 1,
"color": "black",
"spacing": 1
},
"track": {
"thickness": 1,
"color": "black",
"spacing": 1
}
},
"annotation": {
"font": "sans-serif, plain, 12",
"onlyDrawFavorites": true
},
"sequence": {
"font": "sans-serif, plain, 14",
"color": "black",
"contigs": [
{
"id": "NZ_CP092456.1",
"name": "NZ_CP092456.1",
"orientation": "+",
"length": 7232,
"seq": "AGTTCTGTATTTTGCTTTCCATCTGCATTTTTTCGGTGGGTTCGGCATCTTTGGATAGTCGGGATAATAGGAAGATATAACCGCATATATTTTCCCTCGCAATTTCATAATTTACGATGTCGAGGTATTCAACGGTCACATGCTTTAGATCGGTTGATAGGTTATTTAATTTAATCATGGCTGAAATCCTGATTTTTCTAAAATTGGATAAAGCTCTCTGAATTTTTCAGGCTCTAACAGCATATCTGCTATACGGATAGCAAATTGTTGGTAGCTTTCTGTACCTTGTGAATATTTCCCCATTTCAGGCATTTCTGACATTTTTTTTGCAAATAAATGGCGTTGTGCATCGGTCATTTTGATAAAAAAGTCAGGTGTGTTTGGGTCACGCTTAGAATCTAATTTTTTCGGTTGTTGTTTCTGCTTAAACTTAAATGAAAAACCAATAATTGAACGACCACGTTTGTGTTGTTCATATTCTGCTTTTATATCTGTGTACTTATTAATTTGATCAATGGCAAGGTGTAAAACTTTTTCTTTAAATTGCCCCATTCTCTTGTATTCGTTGGGTTCTATACCTAGTTTTAATCTTAGCTCTTCTAGCTCTACCATAGTCACTTTGCCTGTACTACGCCATGCGATAAGCAACTCATACAAGCGTATAGCGTAAACACTAGTTAAACTGCTGACTTGCTCTAGTTCATAACTGGTGAAGTGTTTTTCTAAATTTGTAATCAACGGCACAACATCATCAGAAAACTTAATACGAACAAGAGCTTCATTCTCTACATAAGATATTCGTTGCACCCATCGACTTATTACATTTTCAATGTTGCCCTTTTGAGTAAGTTTTTGATAGCTAAATCTACGATCAAATAGGCTTTTGCAAGCATCTTTAAGAACTTTATAGGCTGTATTTCTATGAACATTAAAATGGTTGATATAGCTTTCAGCATGAATCGTCAAATCTTTATCATTGGGTGTATTTGATTGCCTAGCTTCAAGTATGGCTAACAGTATTAAACGCTGTTCTGAAAGGTCTAAATTATAACTGGCATTTATTAGTGCATTATCTTTAACGACTAGTTCCTTTTTCATAAGCACACATGTTTTTAAAAGTATATAAGTACACTTTATTTTACTAAGTGTCACTTTGCAAGATAAAGGTGTACTTATTGCAAGATAAAGGTGTACTTATTGCAAGATAAAGGTGTACTTATTGCAAGATAAAGGTGTACTTATTTGTATTTTTTTTATTATTTATCAATTTATTACATAATCTAAAAATTAAAAAATTAAAAATATTAAAAAGAGGGGAGTGCTAAAAACTGCCCTAGGTACTCGCTAAAGCTCGTACTCTATTGAAGCTCGTTCCTCGCTTCGAGGGGCAGTTTTTAGTTAATCGAGTTTGTAATATTCAAAAGTAAAAGCAATTGATAATGTATTCGCTTCGCTCATACTTTTTGAAAAGCAAAAGCTCCAAAGTTCGCACCCATTCGGGATGCTCTGTACTTACTGTTTTAAATCGAAAGGGAGCTTGTAATCAGAGAAAAGGTAAGGACGAATTTTTATGATGCTCAATCGCTCGTAGACACTCGCTCGGTTAAATAAGTAATTGATTTTATATAATATATAAGAAACCAGTGGAACCTCTTAAAATTAATTGATACTATTGCCAATTAAATGAGTTTTGAATTTTATCTTATGCAAACAATTAAATTTATCGACTTATTCGCAGGTATGGGCGGATTTCGACTAGGTTTTGAACAAGCTGTTTTAGAACAAAAAAAACAGCCTGTTTGTGTCTTTAGTTCTGAAATAAAACCTTATGCAATTCAAGTTTATAAAGATAATTATAATAATGAAGATGTTGCTGGAGATATTACAACAATAGATAGCTCTGAAATTCCTGACTTTGATGTTTTATTGGCTGGATTTCCTTGCCAAGCTTTTAGTAGTGCTGGAAAACGTCAAGGTTTTTTAGATACTAGAGGAACTATGTTTTTTGAGGTTGAAAGAATCCTCAAAGAAAAAAAACCACAAGCTTTTATTCTTGAAAATGTTGATGGATTGGTAAAGCATGATTTATTAAATAAATCAGATGAGATGGGACAAACACTCACTATTATTCTGCAATCATTAAGAAATCTTGGATATTTTGTTTCTTGGCAAGTATTTGATGCTAGTAATTTCGGGGTTCCTCAAGCAAGGAAGCGTATTTACATCACAGGTACGCTTAATTCATTGGTTAACTTGGATGGATTTGAACCAATAGTTAATACATTAGATTCTGTATTAGAAAAAAATAAACCTCTGTTACAGGGTAAATTAATAGACTTATTGCTAAGTCACTATCAAATAAATGATTTATATGGGAAATCTGTTAAAGATAAAAGAGGTGGATCAAATAATATTCATAGCTGGGATATTGAGTTAAAAGGCTCCGTATCAAAAGATCAACGAGAGCTTCTTGGCAAAATTATGAGGGCTAGAAGAAATAAAAAATGGGCTGAGTTAAAAGGTATTCAATGGATGGATGGAATGCCACTTACTATTGATGAAATTACTACTTTTTACGAACATCCAAACCTTAAAGAAATGCTGGATGATCTTTGTAAAAAGAAATATGTGAAATTAGAACACCCTAAAGATGTAGTTACGTTCTTCGATGATAATGGAATTAAAAAGCAAAAACGTGAGTATAGAGAAGATATTGAAAAGGGGTATAACATCGTAGCAGGCAAACTAAGTTATGAAATCAATAAAATTCTTGATCCTAAAGCTGTAGCTCCAACACTTGTTGCTACAGATTTAGATCGAATTGTTGTACCTGATGGCAAAGGATTAAGGTTGTTAACAGATATAGAACAGAAACGCCTATTTGGTTTTCCTGATGACTATATTTTAAATGTTAAACCTAAAGAAGCATTTGACCTTTTTGGAAATACTGTTGCAGTTCCCGTTGTTAAAGCCGTATCAACTAGATTACTTAATGCCGTTTTTAATAGCGATAAAAGAGATAAAAAACGGCACAATCAACTAGAGCTGATTTAATTATAGAACTTGCCCAGTTCTGATTAGATAGTTTTGTTGAACAGTAGCTAACCAATTTACATGTCTATTTGGATAGAAGTGCTGTAAAGCTTGATCTAATGCAATAACGAAATCCAATCTTTGCCCAAAGAAAGTGATTCTTGGGCTATTGGATCTCCAGTTTTTAGGACGAATATTTACAGGAACACCCTGTTTTACTTGTAAATTTAATATATTAGTATCAGATGGTCCCGCCATTTCCCAAATTTTTTTTACCCAAATATTATTAATCGTCACGATGCCACCAGCTTGTAAAAAATATTCAAAAACAAGATGGTCTGTATCAAGCCTTTCAGGCTCTGTTAAAAGACTTCTAGTAAAAGCATCAAAGTTAGCTAAATCGAAATTTGGGCTAGCAGTACCATCGAAAGCTTTAAACTCTAAGTGTGTTCCATCACCAAGAATGAAGTCAGGCCAAGATTGAGCATTGGGACCTGGCTGCCAACTGAAACCATTCAAAGTCATCCAATTTCCAAACCAATCTTGTAGTAAACCACCTATTACATCTTTTGTGGATACATGCACGTTTACTCCTAAAAGATTGAACGAAATAACCCCAGAAGAACCGATAAGGTTCTGAGCTTGTAACAATGGAATAATTTGTGTGTATAACATTTGAATCTTTACTGTTTTAAATAAAGTTATTGATTAAAATGTAAAAGCATGAATTTTCCAAGAATACTTTAAGACTATTTAATATGGCTTTTTCAGTCTTATTGAGTACGCCACTAGCGACTTGGTTGTAAAACGCCTCTATTAGACATCATTTGGCATTACAATCGTAATGGTGAGTTTTGGTTACCAAATTCTGATTACTTGGATTAAAGAACTATAAATTTAGCAATAGTCATTGAATCACCTCTAATCTTAAATAATTAGTGTATTATTTATGCTAAATAATCTTATTTTTCATAGGTATAAATTGTCTACTCCTAATAAAATAATCCCTTTATCTACAATAGCTTTAATTTCTGACTTTTTAGCAAATTATGAAACCCATGCTTCTATAGACACACTGTTAATGTATTCAATGGCTAGTGGTGAAGCACCTGTAGGAAACAAAGTCGTTAAAGTTAAACAATGGCTTATGAATACAAATAAAGATCCACAAGCAAGTCCATTAAGTGTGTTATCTCGAATTTTAGAGGGATATATTGATAGTTGTCCTTTTGGCTATTTAAGTGGTTCATCGCTTGATGAATATTGGAAAAATATAGAAAAAATAAAACAGAATTTAGCTGATAATTCGCTTGTCTATATGAATGGCAATGTGCTGTCAGGAAATTTAAATAACTCTACGAAAACCTTAGAACAAATGATTAAAAATCTAGATTTTATATCTATTAATCAAGAGTTTGATAGAGCTATTATAAATGTTGAATCAAGCCCTAGAGAAGCCGTTTCTGCATCTAGCAATATTTTAGAGTCTATTTGTAAGATTTACATAGAACAAAACGCATTAACTCCTCCAAACAAACAAGATTTAAAAGCTCTTTTTACAGTGGTTCGAAAGGATTTAAATATCACTACAGATACGATTGAAGACGAAGATATTTTAAAAATAATTTCAGGTGTCCTTAGCGTTGTTGATGGTATTTCTGCGTTAAGAACACATGCTAGTTCTGCTCATGGTGCAGGAATTAAGACATATACTTTAGAGCCAAGGCATGCCCGTTTAGCTATTCATTCATCACATACTATTGCCTTGTTTTTATTAGAATCTTGGAATAAAAAGCAAATAAACAAACAATAAGGTTTAAATTTACTTTATCAGTTATTCTTTACTAGCTCGATGCTTTGAAATATGGCTTTAGCTATGTTTCAAAGTCGGGCAACTTTGCGCTTGCTGTAATCTGATCAGTAATGAGAAAAACCAAGCAAAGTACCGCTCATCTAGTACTTTTTAGGGTCAATTCGACACCAATCATAGGTCTTTTCTTTGACGCTACTAGGCTCAAATGAATAGCAGTTCTTGCGCATAATTCTGACCAGTGTTTCACCATCACTTTCTCTAATTTGTAGCGGATATTTTTTAAGTACAGCCATATCAGCTCTACGGTTATCAATTTCGTCTTTGCTTGGCACGTATAAGAAGATTGCCAAAATGAACACCATCATCACAGCAACAAACGTGCTGGCAAAAATAAGGATAAGTTTTAAGTTGAGCCTGTGTGTAGCTTCGTTTAATGCCTGAATACTGTTGTTTAATGCGCCTATATGCTTCTTATTTGCGTTTTCTAGCGATTTTTCAGCCTTGTCTAGCACTCCGCTAGCGACATGGTTGTAAAACTGCTCTAATCGCTTCTTATCGTCTGCTATGGCTTCTCGATATTCCTTCATGGATGCCAATAAAATATATAACTGGTCATCTAGATCATTTTGATTACTCATAATGACATTCCGCCTCTACTTAGTTTTTGAGATGCCTTGCGGAGTGCTTGCTCGGCTCGTTGTTTATCTAATTCTTGCTGTCGCTTCATTTCCGCTTGGCGTTCCAGTTCTAGACGTTTGGTTTCTTGGTTCTTCTGCCATTGATCAAAACCTTGATCGACACGGTTTAAACCACGCTGTAAAACGCTCTCTTTCTGCTGTTTCTGTTGGTCAAGCTGTTGGATATTCTGCTGTTTCACATTGTCATTGAAACGGCTGATTTCAGTGTCTATGCCTTGTCTGCGTAATTGAGTGACTTTGGTGCCTTCATGGATGGTGGCTTGTAGTCCGTTGTTCTGATCGGCATAGCTGCGGTGATCTATTTTTTCTCGGTAGCCTGCTCGTTTTAATGCGTGATTGGCTAAATTTGCCCACGTTTCCCGAATCTGTTTAATTTCGTCTTGGGTTGTACCCATACCAAGGCTTTTTCGTTTGGCGTTGCTGAGTTCAATATCGGTTTTGGTGGTCAGAGTGAGTTTATTGTTTGCATCCAATTCGGCTTTTCGGGTTGTGAGCATGATATGGGCGTGATGGTTTTTATCATTACCGCCTTTACTCGGTTCATGGATGGCTAAATCTGCGATTACGTCATAGCGATCAACTAAGGACCTGGCAAAGTCTTTTGCCAAGTCCTTACGTTGATCAGCGTCTAATTCATCGGGTATGGCGATTACCCATTCTCTAGCGGTTCGGGCATCTTTGCGGTTTTCGGACTGTTCTGCCAAGTTCCAAAGGTCGTTACGGTCAATTTCAATATCTAAATTAGAAATAATTTCTGAATGGGCGACACCATCCTTTCTCGTAAAGTCGTGGGTTAGTCCTGTACGTTCATCTTTGAGTTTTTCTCCTGAACGGTAAGCACTAGATGCAACTGCGGTTCTGCCTGAACTGCGGTTTACGGTTTTGGTTGAGCAATGATAAATCGCCATCGCTTAACACTTCCGACTAGCAGGGACGTAATAACCGCATTTTTCGCATTCTCTTTTTAGGTTTTGAACTTCTCTTTCTTCTGCATGTTGTGCCATCAGTTCAGGCATCTTGTAAGTGCATTCGTGTCCGCAATTTGGACAAAGATAAAGGTGCGTTTCTCTGAAATTATACCGATGCATTTTTATTTTCCTTTGGCTTTTTAAAATTGCGTAGCAATTTTTTGGGGTTAAGGGGTGTCCCCTTGCGCAACTTTGATTTGAACGAAGTTCAAGTCGTAAGTGCGCATTTCATGAAAAACACGATAGCATATAGCTCGCTTGAACTCTAGTTCATAGAGCCTTATGCTTGAGTGGTTTTCTATATCCCGAAATTAACCGTTATGACAAAATCTGCTGAAAATATCGAAAAGAAAATTGAAGCCCAGTTAGAGAAGCTGAAACAGTTAAAAGCACAGAAACAGGCTATTGAAGCAAGAGAACGTACCAAAAAGAAAGAACAGGAGCGCAAGGATGATACTCGGCGTAAAATTTTGCTCGGTTCTTACTTGATTAAGAAAATGCAGGCAAATGAAGCCAATAAAGAAAAAATACTCGCTGAACTCAACGAATATTTAACAGAAAATAGAGATCGACAGCTTTTTGATTTGCCCGATATTGAAGCCTAATTTTTCTTAGCTGTTTGGTTTTTTTGTTCGGCTTGATACTCTGGAATGAGCGTATTTAAAACCTTTTGAATATTGTCCTTGTCCTCGATTTGTAAATTATCCCGATAGTAAATTA"
}
]
},
"captions": [
{
}
],
"legend": {
"position": "top-right",
"textAlignment": "left",
"defaultFont": "sans-serif, plain, 10",
"defaultFontColor": "black",
"backgroundColor": "rgba(255,255,255,0.75)",
"items": [
{
"name": "Defense",
"swatchColor": "rgba(239,71,111,0.8)",
"decoration": "arrow"
},
{
"name": "Antidefense",
"swatchColor": "rgba(255,209,102,0.8)",
"decoration": "arrow"
},
{
"name": "PDC",
"swatchColor": "rgba(17,138,178,0.5)",
"decoration": "arrow"
},
{
"name": "AMR",
"swatchColor": "rgba(6,214,160,0.5)",
"decoration": "arrow"
},
{
"name": "Integrase",
"swatchColor": "rgba(138,201,38,0.5)",
"decoration": "arrow"
},
{
"name": "Other MGE gene",
"swatchColor": "rgba(50,50,50,0.5)",
"decoration": "arrow"
},
{
"name": "CDS",
"swatchColor": "rgba(10,10,10,0.2)",
"decoration": "arrow"
},
{
"name": "Integron",
"swatchColor": "rgba(128,0,128,0.3)",
"decoration": "arc"
},
{
"name": "MGE",
"swatchColor": "rgba(0,0,255,0.3)",
"decoration": "arc"
}
]
},
"features": [
{
"type": "CDS",
"name": "- -",
"start": 2,
"stop": 178,
"strand": -1,
"contig": "NZ_CP092456.1",
"legend": "CDS",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "Rep_3 Initiator Replication protein",
"start": 175,
"stop": 1098,
"strand": -1,
"contig": "NZ_CP092456.1",
"legend": "Other MGE gene",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "RM type II",
"start": 1684,
"stop": 3054,
"strand": 1,
"contig": "NZ_CP092456.1",
"legend": "Defense",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "RM type II",
"start": 3055,
"stop": 3708,
"strand": -1,
"contig": "NZ_CP092456.1",
"legend": "Defense",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "AbiJ",
"start": 3983,
"stop": 4846,
"strand": 1,
"contig": "NZ_CP092456.1",
"legend": "Defense",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "- -",
"start": 4987,
"stop": 5484,
"strand": -1,
"contig": "NZ_CP092456.1",
"legend": "CDS",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "DMS",
"start": 5481,
"stop": 6452,
"strand": -1,
"contig": "NZ_CP092456.1",
"legend": "Defense",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "- -",
"start": 6833,
"stop": 7117,
"strand": 1,
"contig": "NZ_CP092456.1",
"legend": "Other MGE gene",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "CDS",
"name": "- -",
"start": 7114,
"stop": 7230,
"strand": -1,
"contig": "NZ_CP092456.1",
"legend": "CDS",
"favorite": false,
"showLabel": false,
"labelPlacement": "none"
},
{
"type": "highlight",
"name": "AbiJ",
"start": 3983,
"stop": 4846,
"color": "rgba(255,0,0,0.3)",
"thickness": 0.1,
"legend": "Defense",
"favorite": true
},
{
"type": "highlight",
"name": "RM type II",
"start": 1684,
"stop": 3708,
"color": "rgba(255,0,0,0.3)",
"thickness": 0.1,
"legend": "Defense",
"favorite": true
},
{
"type": "highlight",
"name": "DMS",
"start": 5481,
"stop": 6452,
"color": "rgba(255,0,0,0.3)",
"thickness": 0.1,
"legend": "Defense",
"favorite": true
}
],
"featureSlots": {
"spacing": 10
},
"tracks": [
{
"name": "GC Skew",
"thicknessRatio": 2,
"position": "both",
"dataType": "plot",
"dataMethod": "sequence",
"dataKeys": "gc-content",
"plotStyle": "line",
"color": "purple"
},
{
"name": "Features",
"separateFeaturesBy": "strand",
"position": "both",
"dataType": "feature",
"dataMethod": "type",
"dataKeys": "CDS",
"thicknessRatio": 1,
"showLabels": true
},
{
"name": "Systems",
"thicknessRatio": 0.1,
"position": "both",
"dataType": "feature",
"dataMethod": "type",
"dataKeys": "highlight",
"showLabels": true,
"labelPlacement": "default"
},
{
"name": "MGEs",
"thicknessRatio": 1,
"position": "both",
"dataType": "feature",
"dataMethod": "type",
"dataKeys": "MGE",
"showLabels": true
}
]
}
}