From 08b2eb6be09fb9358bd05405fdd765588c676fe0 Mon Sep 17 00:00:00 2001
From: Alfredo Lucas <alfredo1238@gmail.com>
Date: Sun, 21 Jan 2024 22:24:59 -0500
Subject: [PATCH] Create Windows_Installation_Instructions.md

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+# Installing Miniconda
+
+You need to have Miniconda installed on your system. Follow the instructions below based on your operating system.
+
+1. Download the Miniconda installer for Windows from the [official Miniconda page](https://docs.conda.io/en/latest/miniconda.html).
+2. Run the installer and follow the on-screen instructions.
+3. After installation, use the Anaconda Prompt for the following commands.
+
+## Installing Git:
+
+Install git by typing:
+
+```
+conda install git
+```
+
+## Clone the repository
+
+Clone this repository by doing:
+
+```
+git clone https://github.com/penn-cnt/ieeg-recon.git
+```
+
+## Install the GUI:
+
+After cloning, install the GUI by running:
+
+```
+bash ieeg-recon/python/install_ieeg-recon_gui_linux.sh
+```
+
+## Install VoxTool
+
+Due to differences in package dependencies, the Windows version of iEEG-recon requires a step-by-step installation of VoxTool. It can easily be done by following the instructions [here](https://github.com/penn-cnt/ieeg-recon/blob/main/python/docs/Manual_Voxtool_Installation.md)
+
+## Running iEEG-recon
+
+After all the steps above are completed, activate the `ieeg_recon` environment:
+
+```
+conda activate ieeg_recon
+```
+
+Then run the GUI by typing:
+
+
+```
+python  ieeg-recon/python/ieeg_recon_gui_docker.py
+```