From 22a3f2ed3ee00e7694be42e363442d876c528710 Mon Sep 17 00:00:00 2001 From: Priyash Shah <89684873+plon-Susk7@users.noreply.github.com> Date: Mon, 2 Dec 2024 09:26:48 +0530 Subject: [PATCH 01/22] Patchflow that generates architecture diagram (#1022) * added patchflow to generate architecture * added readme * added tests to CI * Update test.yml --- .github/workflows/test.yml | 7 +++ .../GenerateDiagram/GenerateDiagram.py | 62 +++++++++++++++++++ .../patchflows/GenerateDiagram/README.md | 13 ++++ .../patchflows/GenerateDiagram/__init__.py | 0 .../GenerateDiagram/default_prompt.json | 15 +++++ .../patchflows/GenerateDiagram/defaults.yml | 22 +++++++ patchwork/patchflows/__init__.py | 3 +- 7 files changed, 121 insertions(+), 1 deletion(-) create mode 100644 patchwork/patchflows/GenerateDiagram/GenerateDiagram.py create mode 100644 patchwork/patchflows/GenerateDiagram/README.md create mode 100644 patchwork/patchflows/GenerateDiagram/__init__.py create mode 100644 patchwork/patchflows/GenerateDiagram/default_prompt.json create mode 100644 patchwork/patchflows/GenerateDiagram/defaults.yml diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 0b85b3791..ee90bb0fc 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -201,6 +201,13 @@ jobs: --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --base_path=tests/cicd/generate_docstring \ --disable_telemetry + + - name : Generate Diagram + run: | + poetry run patchwork GenerateDiagram --log debug \ + --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ + --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ + --disable_telemetry - name: Generate UnitTests run: | diff --git a/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py b/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py new file mode 100644 index 000000000..896e99bde --- /dev/null +++ b/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py @@ -0,0 +1,62 @@ +import json +from pathlib import Path +import yaml + +from patchwork.common.utils.step_typing import validate_steps_with_inputs +from patchwork.step import Step +from patchwork.steps import ( + LLM, + CallCode2Prompt, + ModifyCode, + PR +) + +_DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" +_DEFAULT_PROMPT_JSON = Path(__file__).parent / "default_prompt.json" + +class GenerateDiagram(Step): + def __init__(self, inputs): + super().__init__(inputs) + + final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) + if final_inputs is None: + final_inputs = {} + + final_inputs.update(inputs) + + final_inputs["prompt_id"] = "GenerateDiagram" + if "folder_path" not in final_inputs.keys(): + final_inputs["folder_path"] = Path.cwd() + else: + final_inputs["folder_path"] = Path(final_inputs["folder_path"]) + + print(final_inputs["folder_path"]) + + if "prompt_template_file" not in final_inputs: + final_inputs["prompt_template_file"] = _DEFAULT_PROMPT_JSON + + final_inputs["pr_title"] = f"PatchWork System Architecture Diagram generated" + final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" + + validate_steps_with_inputs( + set(final_inputs.keys()).union({"prompt_values","files_to_patch"}), LLM, CallCode2Prompt,ModifyCode,PR + ) + self.inputs = final_inputs + + def run(self): + outputs = CallCode2Prompt(self.inputs).run() + new_file_name = f"diagram.md" + new_file_path = Path(outputs['uri']).with_name(new_file_name) + Path(outputs['uri']).rename(new_file_path) + outputs['uri'] = str(new_file_path) + self.inputs["response_partitions"] = {"patch": ["```", "\n", "```"]} + self.inputs["files_to_patch"] = self.inputs["prompt_values"] = [outputs] + outputs = LLM(self.inputs).run() + self.inputs.update(outputs) + outputs = ModifyCode(self.inputs).run() + self.inputs.update(outputs) + self.inputs["pr_header"] = f"This pull request from patchwork generates system architecture diagram." + outputs = PR(self.inputs).run() + self.inputs.update(outputs) + + return self.inputs diff --git a/patchwork/patchflows/GenerateDiagram/README.md b/patchwork/patchflows/GenerateDiagram/README.md new file mode 100644 index 000000000..6155fe887 --- /dev/null +++ b/patchwork/patchflows/GenerateDiagram/README.md @@ -0,0 +1,13 @@ +## GenerateDiagram Code Overview + +### Inputs +- The code reads default inputs from a YAML file. +- It updates the default inputs with any additional inputs provided. +- It sets up various parameters like folder path, prompt template file, PR title, branch prefix, etc. +- It validates the inputs with specific steps required for the process. + +### Outputs +- The code runs a series of steps to generate a system architecture diagram. +- It utilizes classes like LLM, CallCode2Prompt, ModifyCode, and PR to process the inputs. +- The final output is a set of inputs updated with the results of each step. +- The code is designed to generate a pull request with the system architecture diagram. diff --git a/patchwork/patchflows/GenerateDiagram/__init__.py b/patchwork/patchflows/GenerateDiagram/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/patchwork/patchflows/GenerateDiagram/default_prompt.json b/patchwork/patchflows/GenerateDiagram/default_prompt.json new file mode 100644 index 000000000..d497691e7 --- /dev/null +++ b/patchwork/patchflows/GenerateDiagram/default_prompt.json @@ -0,0 +1,15 @@ +[ + { + "id": "GenerateDiagram", + "prompts": [ + { + "role": "system", + "content": "You are an experienced software architect skilled at visualizing system designs. Users will provide repository details, and you will generate a comprehensive system architecture diagram using Mermaid markdown syntax. Output the diagram code directly with no additional text, formatting, or triple quotes. The response should be ready to be pasted into an editor supporting Mermaid syntax." + }, + { + "role": "user", + "content": "Repo Details: {{fullContent}}" + } + ] + } +] diff --git a/patchwork/patchflows/GenerateDiagram/defaults.yml b/patchwork/patchflows/GenerateDiagram/defaults.yml new file mode 100644 index 000000000..739bb6175 --- /dev/null +++ b/patchwork/patchflows/GenerateDiagram/defaults.yml @@ -0,0 +1,22 @@ +# CallLLM Inputs +# openai_api_key: required-for-chatgpt +# google_api_key: required-for-gemini +# model: gpt-4o +# client_base_url: https://api.openai.com/v1 +# Example HF model +# client_base_url: https://api-inference.huggingface.co/models/codellama/CodeLlama-70b-Instruct-hf/v1 +# model: codellama/CodeLlama-70b-Instruct-hf +# model_temperature: 0.2 +# model_top_p: 0.95 +# model_max_tokens: 2000 + +# folder_path : path/to/folder/with/class + +# CommitChanges Inputs +disable_branch: false + +# CreatePR Inputs +disable_pr: false +force_pr_creation: true +# github_api_key: required-for-github-scm +# gitlab_api_key: required-for-gitlab-scm \ No newline at end of file diff --git a/patchwork/patchflows/__init__.py b/patchwork/patchflows/__init__.py index ec477be14..e5c59ec5b 100644 --- a/patchwork/patchflows/__init__.py +++ b/patchwork/patchflows/__init__.py @@ -5,5 +5,6 @@ from .PRReview.PRReview import PRReview from .ResolveIssue.ResolveIssue import ResolveIssue from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests +from .GenerateDiagram.GenerateDiagram import GenerateDiagram -__all__ = ["AutoFix", "DependencyUpgrade", "GenerateREADME", "PRReview", "ResolveIssue", "GenerateDocstring", "GenerateUnitTests"] +__all__ = ["AutoFix", "DependencyUpgrade", "GenerateREADME", "PRReview", "ResolveIssue", "GenerateDocstring", "GenerateUnitTests","GenerateDiagram"] From 8295513e9190b5c58deb4074288cf03fc868631f Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Wed, 4 Dec 2024 15:19:44 +0800 Subject: [PATCH 02/22] Generatediagram test (#1029) * added patchflow to generate architecture * added readme * added tests to CI * add test app * fixes * bump version * fix copilot user unhanded in scm client * simplify and reduce context usagr * restrict to steps * fix title --------- Co-authored-by: priyash7 --- .github/workflows/test.yml | 9 +++++---- patchwork/common/client/scm.py | 16 ++++++++++++---- .../GenerateDiagram/GenerateDiagram.py | 15 ++++----------- .../patchflows/GenerateDiagram/defaults.yml | 4 ++-- tests/common/test_app.py | 2 ++ 5 files changed, 25 insertions(+), 21 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index ee90bb0fc..baff1db72 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -70,7 +70,7 @@ jobs: id: setup-python uses: actions/setup-python@v5 with: - python-version: '3.8' + python-version: '3.9' - name: Install Poetry uses: snok/install-poetry@v1 @@ -123,7 +123,7 @@ jobs: id: setup-python uses: actions/setup-python@v5 with: - python-version: '3.8' + python-version: '3.9' - name: Install Poetry uses: snok/install-poetry@v1 @@ -166,7 +166,7 @@ jobs: id: setup-python uses: actions/setup-python@v5 with: - python-version: '3.8' + python-version: '3.9' - name: Install Poetry uses: snok/install-poetry@v1 @@ -201,12 +201,13 @@ jobs: --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --base_path=tests/cicd/generate_docstring \ --disable_telemetry - + - name : Generate Diagram run: | poetry run patchwork GenerateDiagram --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ + --folder_path=patchwork/steps \ --disable_telemetry - name: Generate UnitTests diff --git a/patchwork/common/client/scm.py b/patchwork/common/client/scm.py index 501078bfa..cf0f33381 100644 --- a/patchwork/common/client/scm.py +++ b/patchwork/common/client/scm.py @@ -10,6 +10,7 @@ import gitlab.const from attrs import define from github import Auth, Consts, Github, GithubException, PullRequest +from github.GithubException import UnknownObjectException from gitlab import Gitlab, GitlabAuthenticationError, GitlabError from gitlab.v4.objects import ProjectMergeRequest from giturlparse import GitUrlParsed, parse @@ -333,13 +334,20 @@ def reset_comments(self) -> None: comment.delete() def texts(self) -> PullRequestTexts: + comments = [] + for comment in chain(self._pr.get_review_comments(), self._pr.get_issue_comments()): + try: + # Copilot user throws here + user = comment.user.name + except UnknownObjectException: + user = comment.user.login + + comments.append(dict(user=user, body=comment.body)) + return dict( title=self._pr.title or "", body=self._pr.body or "", - comments=[ - dict(user=comment.user.name, body=comment.body) - for comment in itertools.chain(self._pr.get_comments(), self._pr.get_issue_comments()) - ], + comments=comments, # None checks for binary files diffs={file.filename: file.patch for file in self._pr.get_files() if file.patch is not None}, ) diff --git a/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py b/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py index 896e99bde..0062d5f4d 100644 --- a/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py +++ b/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py @@ -25,30 +25,23 @@ def __init__(self, inputs): final_inputs.update(inputs) final_inputs["prompt_id"] = "GenerateDiagram" - if "folder_path" not in final_inputs.keys(): - final_inputs["folder_path"] = Path.cwd() - else: - final_inputs["folder_path"] = Path(final_inputs["folder_path"]) - - print(final_inputs["folder_path"]) if "prompt_template_file" not in final_inputs: final_inputs["prompt_template_file"] = _DEFAULT_PROMPT_JSON - final_inputs["pr_title"] = f"PatchWork System Architecture Diagram generated" + final_inputs["pr_title"] = f"PatchWork System Architecture Diagram" final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" validate_steps_with_inputs( set(final_inputs.keys()).union({"prompt_values","files_to_patch"}), LLM, CallCode2Prompt,ModifyCode,PR ) + + self.base_path = final_inputs["base_path"] self.inputs = final_inputs def run(self): outputs = CallCode2Prompt(self.inputs).run() - new_file_name = f"diagram.md" - new_file_path = Path(outputs['uri']).with_name(new_file_name) - Path(outputs['uri']).rename(new_file_path) - outputs['uri'] = str(new_file_path) + outputs['uri'] = self.base_path self.inputs["response_partitions"] = {"patch": ["```", "\n", "```"]} self.inputs["files_to_patch"] = self.inputs["prompt_values"] = [outputs] outputs = LLM(self.inputs).run() diff --git a/patchwork/patchflows/GenerateDiagram/defaults.yml b/patchwork/patchflows/GenerateDiagram/defaults.yml index 739bb6175..1d28b8fc2 100644 --- a/patchwork/patchflows/GenerateDiagram/defaults.yml +++ b/patchwork/patchflows/GenerateDiagram/defaults.yml @@ -10,8 +10,8 @@ # model_top_p: 0.95 # model_max_tokens: 2000 -# folder_path : path/to/folder/with/class - +base_path: diagram.md +folder_path: . # CommitChanges Inputs disable_branch: false diff --git a/tests/common/test_app.py b/tests/common/test_app.py index 85ca95cd3..4dee354bc 100644 --- a/tests/common/test_app.py +++ b/tests/common/test_app.py @@ -48,6 +48,7 @@ def test_default_list_option_callback(runner): == """\ AutoFix DependencyUpgrade +GenerateDiagram GenerateDocstring GenerateREADME GenerateUnitTests @@ -66,6 +67,7 @@ def test_config_list_option_callback(runner, config_dir, patchflow_file): == f"""\ AutoFix DependencyUpgrade +GenerateDiagram GenerateDocstring GenerateREADME GenerateUnitTests From e9b7ee552fb88bbab2efa2a45bb9d2530eee1b24 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Thu, 5 Dec 2024 14:36:47 +0800 Subject: [PATCH 03/22] Upgrade ResolveIssue (#1040) * init upgrade resolve issue * update * update lock and lint * refactor common module * enable * fix resolve issue * fix aio * update imports * lint * fix output type * fix tracing * switch to set * update set with set * Patched patchwork/steps/FixIssue/README.md (#1046) Co-authored-by: patched.codes[bot] <298395+patched.codes[bot]@users.noreply.github.com> * fix test --------- Co-authored-by: Patched <126385808+patched-admin@users.noreply.github.com> Co-authored-by: patched.codes[bot] <298395+patched.codes[bot]@users.noreply.github.com> --- .github/workflows/test.yml | 15 +- patchwork/common/client/llm/aio.py | 79 +- patchwork/common/client/llm/anthropic.py | 210 +- patchwork/common/client/llm/google.py | 25 +- patchwork/common/client/llm/openai_.py | 27 +- patchwork/common/client/llm/protocol.py | 23 +- .../common/multiturn_strategy/__init__.py | 0 .../multiturn_strategy/analyze_implement.py | 93 + .../multiturn_strategy/multiturn_strategy.py | 74 + patchwork/common/tools/__init__.py | 9 + patchwork/common/tools/bash_tool.py | 53 + patchwork/common/tools/code_edit_tools.py | 178 ++ patchwork/common/tools/tool.py | 41 + patchwork/common/utils/filter_paths.py | 19 +- .../GenerateDiagram/GenerateDiagram.py | 16 +- .../GenerateUnitTests/GenerateUnitTests.py | 20 +- .../patchflows/ResolveIssue/ResolveIssue.py | 103 +- patchwork/patchflows/__init__.py | 15 +- .../steps/CommitChanges/CommitChanges.py | 4 +- patchwork/steps/FixIssue/FixIssue.py | 127 + patchwork/steps/FixIssue/README.md | 57 + patchwork/steps/FixIssue/__init__.py | 0 patchwork/steps/FixIssue/typed.py | 39 + patchwork/steps/ModifyCode/ModifyCode.py | 2 +- .../steps/PreparePrompt/PreparePrompt.py | 6 +- patchwork/steps/ReadIssues/ReadIssues.py | 7 + patchwork/steps/ReadIssues/typed.py | 1 + patchwork/steps/__init__.py | 2 + poetry.lock | 2358 ++++++++--------- pyproject.toml | 4 +- tests/steps/test_ReadIssues.py | 4 +- 31 files changed, 2221 insertions(+), 1390 deletions(-) create mode 100644 patchwork/common/multiturn_strategy/__init__.py create mode 100644 patchwork/common/multiturn_strategy/analyze_implement.py create mode 100644 patchwork/common/multiturn_strategy/multiturn_strategy.py create mode 100644 patchwork/common/tools/__init__.py create mode 100644 patchwork/common/tools/bash_tool.py create mode 100644 patchwork/common/tools/code_edit_tools.py create mode 100644 patchwork/common/tools/tool.py create mode 100644 patchwork/steps/FixIssue/FixIssue.py create mode 100644 patchwork/steps/FixIssue/README.md create mode 100644 patchwork/steps/FixIssue/__init__.py create mode 100644 patchwork/steps/FixIssue/typed.py diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index baff1db72..2acfb8d6a 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -143,13 +143,14 @@ jobs: if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: poetry install --no-interaction --only main --extras rag - - name: Propose relevant file to issues - run: | - poetry run patchwork ResolveIssue --log debug \ - --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ - --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ - --issue_url=https://github.com/patched-codes/patchwork/issues/20 \ - --disable_telemetry +# disabled because this currently takes too long +# - name: Resolve issue +# run: | +# poetry run patchwork ResolveIssue --log debug \ +# --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ +# --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ +# --issue_url=https://github.com/patched-codes/patchwork/issues/1039 \ +# --disable_telemetry main-test: runs-on: ubuntu-latest diff --git a/patchwork/common/client/llm/aio.py b/patchwork/common/client/llm/aio.py index cdb9714c3..fa8691193 100644 --- a/patchwork/common/client/llm/aio.py +++ b/patchwork/common/client/llm/aio.py @@ -1,13 +1,21 @@ from __future__ import annotations +import os + from openai.types.chat import ( ChatCompletion, ChatCompletionMessageParam, + ChatCompletionToolChoiceOptionParam, + ChatCompletionToolParam, completion_create_params, ) from typing_extensions import Dict, Iterable, List, Optional, Union +from patchwork.common.client.llm.anthropic import AnthropicLlmClient +from patchwork.common.client.llm.google import GoogleLlmClient +from patchwork.common.client.llm.openai_ import OpenAiLlmClient from patchwork.common.client.llm.protocol import NOT_GIVEN, LlmClient, NotGiven +from patchwork.common.constants import DEFAULT_PATCH_URL from patchwork.logger import logger @@ -29,10 +37,43 @@ def get_models(self) -> set[str]: def is_model_supported(self, model: str) -> bool: return any(client.is_model_supported(model) for client in self.__clients) - def is_prompt_supported(self, messages: Iterable[ChatCompletionMessageParam], model: str) -> int: + def is_prompt_supported( + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: dict | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, + ) -> int: for client in self.__clients: if client.is_model_supported(model): - return client.is_prompt_supported(messages, model) + return client.is_prompt_supported( + messages=messages, + model=model, + frequency_penalty=frequency_penalty, + logit_bias=logit_bias, + logprobs=logprobs, + max_tokens=max_tokens, + n=n, + presence_penalty=presence_penalty, + response_format=response_format, + stop=stop, + temperature=temperature, + tools=tools, + tool_choice=tool_choice, + top_logprobs=top_logprobs, + top_p=top_p, + ) return -1 def truncate_messages( @@ -56,6 +97,8 @@ def chat_completion( response_format: dict | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> ChatCompletion: @@ -74,6 +117,8 @@ def chat_completion( response_format, stop, temperature, + tools, + tool_choice, top_logprobs, top_p, ) @@ -82,3 +127,33 @@ def chat_completion( f"Model {model} is not supported by {client_names} clients. " f"Please ensure that the respective API keys are correct." ) + + @staticmethod + def create_aio_client(inputs) -> "AioLlmClient" | None: + clients = [] + + patched_key = inputs.get("patched_api_key") + if patched_key is not None: + client = OpenAiLlmClient(patched_key, DEFAULT_PATCH_URL) + clients.append(client) + + openai_key = inputs.get("openai_api_key") or os.environ.get("OPENAI_API_KEY") + if openai_key is not None: + client_args = {key[len("client_") :]: value for key, value in inputs.items() if key.startswith("client_")} + client = OpenAiLlmClient(openai_key, **client_args) + clients.append(client) + + google_key = inputs.get("google_api_key") + if google_key is not None: + client = GoogleLlmClient(google_key) + clients.append(client) + + anthropic_key = inputs.get("anthropic_api_key") + if anthropic_key is not None: + client = AnthropicLlmClient(anthropic_key) + clients.append(client) + + if len(clients) == 0: + return None + + return AioLlmClient(*clients) diff --git a/patchwork/common/client/llm/anthropic.py b/patchwork/common/client/llm/anthropic.py index 583cdcc0c..081445c67 100644 --- a/patchwork/common/client/llm/anthropic.py +++ b/patchwork/common/client/llm/anthropic.py @@ -5,11 +5,13 @@ from functools import lru_cache from anthropic import Anthropic -from anthropic.types import Message, TextBlockParam +from anthropic.types import Message, MessageParam, TextBlockParam from openai.types.chat import ( ChatCompletion, ChatCompletionMessage, ChatCompletionMessageParam, + ChatCompletionToolChoiceOptionParam, + ChatCompletionToolParam, completion_create_params, ) from openai.types.chat.chat_completion import Choice, CompletionUsage @@ -81,6 +83,119 @@ def __get_model_limit(self, model: str) -> int: return 100_000 - safety_margin return 200_000 - safety_margin + def __adapt_input_messages(self, messages: Iterable[ChatCompletionMessageParam]) -> list[MessageParam]: + new_messages = [] + for message in messages: + if message.get("role") == "system": + if system is NOT_GIVEN: + system = list() + system.append(TextBlockParam(text=message.get("content"), type="text")) + elif message.get("role") == "tool": + new_messages.append( + dict( + role="user", + content=[ + dict( + type="tool_result", + tool_use_id=message.get("tool_call_id"), + content=message.get("content"), + ) + ], + ) + ) + elif message.get("role") == "assistant" and len(message.get("tool_calls", [])) > 0: + tool_calls = message["tool_calls"] + tool_calls_as_content = [ + dict( + type="tool_use", + id=tool_call["id"], + name=tool_call["function"]["name"], + input=json.loads(tool_call["function"]["arguments"]), + ) + for tool_call in tool_calls + ] + new_messages.append( + dict( + role="assistant", + content=[ + *tool_calls_as_content, + ], + ) + ) + else: + new_messages.append(message) + + return new_messages + + def __adapt_chat_completion_request( + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, + ): + system: Union[str, Iterable[TextBlockParam]] | NotGiven = NOT_GIVEN + adapted_messages = self.__adapt_input_messages(messages) + default_max_token = 1000 + + if tool_choice is not NOT_GIVEN: + # openai tool choice to anthropic tool choice mapping: + # openai : none, auto, required , required + # anthropic: NA , auto, any , tool + if isinstance(tool_choice, str): + if tool_choice == "required": + tool_choice = dict(type="any") + elif tool_choice == "none": + tool_choice = NOT_GIVEN + else: + tool_choice = dict(type=tool_choice) + else: + tool_choice_type = tool_choice.get("type") + if tool_choice_type == "required": + if tool_choice.get("function") is not None: + tool_choice["type"] = "tool" + tool_choice["name"] = tool_choice["function"]["name"] + else: + tool_choice["type"] = "any" + elif tool_choice_type == "none": + tool_choice = NOT_GIVEN + + input_kwargs = dict( + messages=adapted_messages, + system=system, + max_tokens=default_max_token if max_tokens is None or max_tokens is NOT_GIVEN else max_tokens, + model=model, + stop_sequences=[stop] if isinstance(stop, str) else stop, + temperature=temperature, + tools=[tool.get("function") for tool in tools if tool.get("function") is not None], + tool_choice=tool_choice, + top_p=top_p, + ) + + if response_format is not NOT_GIVEN and response_format.get("type") == "json_schema": + input_kwargs["tool_choice"] = dict(type="tool", name="response_format") + if input_kwargs.get("tools") is NOT_GIVEN: + input_kwargs["tools"] = list() + response_format_tool = dict( + name="response_format", + description="The response format to use", + input_schema=response_format["json_schema"]["schema"], + ) + input_kwargs["tools"] = [*input_kwargs["tools"], response_format_tool] + + return NotGiven.remove_not_given(input_kwargs) + @lru_cache(maxsize=None) def get_models(self) -> set[str]: return self.__definitely_allowed_models.union(set(f"{self.__allowed_model_prefix}*")) @@ -88,16 +203,49 @@ def get_models(self) -> set[str]: def is_model_supported(self, model: str) -> bool: return model in self.__definitely_allowed_models or model.startswith(self.__allowed_model_prefix) - def is_prompt_supported(self, messages: Iterable[ChatCompletionMessageParam], model: str) -> int: + def is_prompt_supported( + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, + ) -> int: model_limit = self.__get_model_limit(model) - token_count = 0 - for message in messages: - message_token_count = self.client.count_tokens(message.get("content")) - token_count = token_count + message_token_count - if token_count > model_limit: - return -1 - - return model_limit - token_count + input_kwargs = self.__adapt_chat_completion_request( + messages=messages, + model=model, + frequency_penalty=frequency_penalty, + logit_bias=logit_bias, + logprobs=logprobs, + max_tokens=max_tokens, + n=n, + presence_penalty=presence_penalty, + response_format=response_format, + stop=stop, + temperature=temperature, + tools=tools, + tool_choice=tool_choice, + top_logprobs=top_logprobs, + top_p=top_p, + ) + count_token_input_kwargs = { + k: v + for k, v in input_kwargs.items() + if k in {"messages", "model", "system", "tool_choice", "tools", "beta"} + } + message_token_count = self.client.beta.messages.count_tokens(**count_token_input_kwargs) + return model_limit - message_token_count.input_tokens def truncate_messages( self, messages: Iterable[ChatCompletionMessageParam], model: str @@ -117,38 +265,28 @@ def chat_completion( response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> ChatCompletion: - system: Union[str, Iterable[TextBlockParam]] | NotGiven = NOT_GIVEN - other_messages = [] - for message in messages: - if message.get("role") == "system": - if system is NOT_GIVEN: - system = list() - system.append(TextBlockParam(text=message.get("content"), type="text")) - else: - other_messages.append(message) - - default_max_token = 1000 - input_kwargs = dict( - messages=other_messages, - system=system, - max_tokens=default_max_token if max_tokens is None or max_tokens is NOT_GIVEN else max_tokens, + input_kwargs = self.__adapt_chat_completion_request( + messages=messages, model=model, - stop_sequences=[stop] if isinstance(stop, str) else stop, + frequency_penalty=frequency_penalty, + logit_bias=logit_bias, + logprobs=logprobs, + max_tokens=max_tokens, + n=n, + presence_penalty=presence_penalty, + response_format=response_format, + stop=stop, temperature=temperature, + tools=tools, + tool_choice=tool_choice, + top_logprobs=top_logprobs, top_p=top_p, ) - if response_format is not NOT_GIVEN and response_format.get("type") == "json_schema": - input_kwargs["tool_choice"] = dict(type="tool", name="response_format") - input_kwargs["tools"] = [ - dict( - name="response_format", - description="The response format to use", - input_schema=response_format["json_schema"]["schema"], - ) - ] - response = self.client.messages.create(**NotGiven.remove_not_given(input_kwargs)) + response = self.client.messages.create(**input_kwargs) return _anthropic_to_openai_response(model, response) diff --git a/patchwork/common/client/llm/google.py b/patchwork/common/client/llm/google.py index 6949135c5..80884451e 100644 --- a/patchwork/common/client/llm/google.py +++ b/patchwork/common/client/llm/google.py @@ -16,6 +16,8 @@ from openai.types.chat import ( ChatCompletionMessage, ChatCompletionMessageParam, + ChatCompletionToolChoiceOptionParam, + ChatCompletionToolParam, completion_create_params, ) from openai.types.chat.chat_completion import ChatCompletion, Choice @@ -55,7 +57,24 @@ def get_models(self) -> set[str]: def is_model_supported(self, model: str) -> bool: return model in self.get_models() - def is_prompt_supported(self, messages: Iterable[ChatCompletionMessageParam], model: str) -> int: + def is_prompt_supported( + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: dict | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, + ) -> int: system, chat = self.__openai_messages_to_google_messages(messages) gen_model = generativeai.GenerativeModel(model_name=model, system_instruction=system) try: @@ -96,9 +115,11 @@ def chat_completion( max_tokens: Optional[int] | NotGiven = NOT_GIVEN, n: Optional[int] | NotGiven = NOT_GIVEN, presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, - response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + response_format: str | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> ChatCompletion: diff --git a/patchwork/common/client/llm/openai_.py b/patchwork/common/client/llm/openai_.py index 1ce603f0a..6573ee24e 100644 --- a/patchwork/common/client/llm/openai_.py +++ b/patchwork/common/client/llm/openai_.py @@ -7,6 +7,8 @@ from openai.types.chat import ( ChatCompletion, ChatCompletionMessageParam, + ChatCompletionToolChoiceOptionParam, + ChatCompletionToolParam, completion_create_params, ) from typing_extensions import Dict, Iterable, List, Optional, Union @@ -29,7 +31,7 @@ def _cached_list_models_from_openai(api_key): class OpenAiLlmClient(LlmClient): __MODEL_LIMITS = { "gpt-3.5-turbo": 16_385, - "gpt-4 ": 8_192, + "gpt-4": 8_192, "gpt-4-turbo": 8_192, "o1-mini": 128_000, "gpt-4o-mini": 128_000, @@ -61,7 +63,24 @@ def is_model_supported(self, model: str) -> bool: def __get_model_limits(self, model: str) -> int: return self.__MODEL_LIMITS.get(model, 128_000) - def is_prompt_supported(self, messages: Iterable[ChatCompletionMessageParam], model: str) -> int: + def is_prompt_supported( + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: dict | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, + ) -> int: # might not implement model endpoint if self.__is_not_openai_url(): return 1 @@ -95,6 +114,8 @@ def chat_completion( response_format: dict | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> ChatCompletion: @@ -110,6 +131,8 @@ def chat_completion( response_format=response_format, stop=stop, temperature=temperature, + tools=tools, + tool_choice=tool_choice, top_logprobs=top_logprobs, top_p=top_p, ) diff --git a/patchwork/common/client/llm/protocol.py b/patchwork/common/client/llm/protocol.py index ff02b685a..51d0da1fc 100644 --- a/patchwork/common/client/llm/protocol.py +++ b/patchwork/common/client/llm/protocol.py @@ -3,6 +3,8 @@ from openai.types.chat import ( ChatCompletion, ChatCompletionMessageParam, + ChatCompletionToolChoiceOptionParam, + ChatCompletionToolParam, completion_create_params, ) from typing_extensions import Any, Dict, Iterable, List, Optional, Protocol, Union @@ -32,7 +34,24 @@ def get_models(self) -> set[str]: def is_model_supported(self, model: str) -> bool: ... - def is_prompt_supported(self, messages: Iterable[ChatCompletionMessageParam], model: str) -> int: + def is_prompt_supported( + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: dict | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, + ) -> int: ... def truncate_messages( @@ -112,6 +131,8 @@ def chat_completion( response_format: str | completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> ChatCompletion: diff --git a/patchwork/common/multiturn_strategy/__init__.py b/patchwork/common/multiturn_strategy/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/patchwork/common/multiturn_strategy/analyze_implement.py b/patchwork/common/multiturn_strategy/analyze_implement.py new file mode 100644 index 000000000..3686eaec6 --- /dev/null +++ b/patchwork/common/multiturn_strategy/analyze_implement.py @@ -0,0 +1,93 @@ +from __future__ import annotations + +import random +import string +from abc import abstractmethod +from collections import defaultdict +from enum import Enum, auto + +import chevron +from openai.types.chat import ChatCompletionMessageParam + +from patchwork.common.client.llm.protocol import LlmClient +from patchwork.common.multiturn_strategy.multiturn_strategy import MultiturnStrategy +from patchwork.common.tools import Tool + + +class STAGE(Enum): + ANALYSIS = auto() + IMPLEMENT = auto() + + +class AnalyzeImplementStrategy(MultiturnStrategy): + def __init__( + self, + tool_set: dict[str, Tool], + llm_client: LlmClient, + initial_template_data: dict[str, str], + analysis_prompt_template: str, + implementation_prompt_template: str, + **kwargs, + ): + super().__init__(tool_set=tool_set, **kwargs) + self.llm_client = llm_client + self.template_data = initial_template_data + self.analysis_prompt_template = analysis_prompt_template + self.implementation_prompt_template = implementation_prompt_template + self._reset() + + def _reset(self): + self._stage = STAGE.ANALYSIS + self.run_count = 0 + self.stage_run_counts = defaultdict(int) + + def __run_prompt(self, messages: list[ChatCompletionMessageParam]) -> list[ChatCompletionMessageParam]: + input_kwargs = dict( + messages=messages, + model="claude-3-5-sonnet-latest", + tools=self.get_tools_spec(), + max_tokens=8096, + ) + is_prompt_safe = self.llm_client.is_prompt_supported(**input_kwargs) + if is_prompt_safe < 0: + raise ValueError("The subsequent prompt is not supported, due to large size.") + response = self.llm_client.chat_completion(**input_kwargs) + new_messages = [choice.message.to_dict() for choice in response.choices] + messages.extend(new_messages) + return messages + + def __render_prompt(self, prompt: str) -> str: + chevron.render.__globals__["_html_escape"] = lambda string: string + return chevron.render( + template=prompt, + data=self.template_data, + partials_path=None, + partials_ext="".join(random.choices(string.ascii_uppercase + string.digits, k=32)), + partials_dict=dict(), + ) + + def run_initial_prompt(self) -> list[ChatCompletionMessageParam]: + initial_prompt = self.__render_prompt(self.analysis_prompt_template) + messages = [dict(role="user", content=initial_prompt)] + return self.__run_prompt(messages) + + def run_subsequent_prompt(self, messages: list[ChatCompletionMessageParam]) -> list[ChatCompletionMessageParam]: + last_message = messages[-1] + if self._stage == STAGE.ANALYSIS: + possible_analysis_message = self.extract_analysis_message(last_message) + if possible_analysis_message is not None: + self._stage = STAGE.IMPLEMENT + self.template_data["analysis_results"] = possible_analysis_message + implement_prompt = self.__render_prompt(self.implementation_prompt_template) + messages = [dict(role="user", content=implement_prompt)] + return self.__run_prompt(messages) + + if last_message.get("tool_calls") is not None: + tool_messages = self.execute_tools(last_message) + messages.extend(tool_messages) + messages.append(dict(role="user", content=f"Continue with the {self._stage.name.upper()} stage.")) + return self.__run_prompt(messages) + + @abstractmethod + def extract_analysis_message(self, message: ChatCompletionMessageParam) -> dict[str, str]: + pass diff --git a/patchwork/common/multiturn_strategy/multiturn_strategy.py b/patchwork/common/multiturn_strategy/multiturn_strategy.py new file mode 100644 index 000000000..70094fb67 --- /dev/null +++ b/patchwork/common/multiturn_strategy/multiturn_strategy.py @@ -0,0 +1,74 @@ +from __future__ import annotations + +import json +import logging +import sys +from abc import ABC, abstractmethod +from json import JSONDecodeError + +from openai.types.chat.chat_completion_message import ChatCompletionMessage +from openai.types.chat.chat_completion_message_param import ChatCompletionMessageParam +from openai.types.chat.chat_completion_tool_param import ChatCompletionToolParam + +from patchwork.common.tools import Tool + + +class MultiturnStrategy(ABC): + def __init__(self, tool_set: dict[str, Tool], limit: int | None = None, *args, **kwargs): + self.tool_set = tool_set + self.limit = limit + self.run_count = 0 + + def get_tools_spec(self) -> list[ChatCompletionToolParam]: + return [ + dict( + type="function", + function={"name": k, **v.json_schema}, + ) + for k, v in self.tool_set.items() + ] + + @abstractmethod + def run_initial_prompt(self) -> tuple[ChatCompletionMessage, list[ChatCompletionMessageParam]]: + pass + + @abstractmethod + def run_subsequent_prompt(self, messages: list[ChatCompletionMessageParam]) -> list[ChatCompletionMessageParam]: + pass + + def is_stop(self, messages: list[ChatCompletionMessageParam]) -> bool: + return False + + def execute_tools(self, last_message: ChatCompletionMessageParam) -> list[ChatCompletionMessageParam]: + rv = [] + for tool_call in last_message.get("tool_calls", []): + tool_name_to_use = tool_call.get("function", {}).get("name") + tool_to_use = self.tool_set.get(tool_name_to_use, None) + if tool_to_use is None: + logging.info("LLM just used an non-existent tool!") + continue + + logging.info(f"Running tool: {tool_name_to_use}") + try: + tool_arguments = tool_call.get("function", {}).get("arguments", "{}") + tool_kwargs = json.loads(tool_arguments) + tool_output = tool_to_use.execute(**tool_kwargs) + except JSONDecodeError: + tool_output = "Arguments must be passed through a valid JSON object" + + rv.append({"tool_call_id": tool_call.get("id", ""), "role": "tool", "content": tool_output}) + + return rv + + def execute(self, limit: int | None = None) -> None: + messages = self.run_initial_prompt() + try: + for i in range(limit or self.limit or sys.maxsize): + self.run_count = i + 1 + if self.is_stop(messages): + break + messages = self.run_subsequent_prompt(messages) + except Exception as e: + logging.error(e) + finally: + self.run_count = 0 diff --git a/patchwork/common/tools/__init__.py b/patchwork/common/tools/__init__.py new file mode 100644 index 000000000..e813cb9d9 --- /dev/null +++ b/patchwork/common/tools/__init__.py @@ -0,0 +1,9 @@ +from patchwork.common.tools.bash_tool import BashTool +from patchwork.common.tools.code_edit_tools import CodeEditTool +from patchwork.common.tools.tool import Tool + +__all__ = [ + "Tool", + "CodeEditTool", + "BashTool", +] diff --git a/patchwork/common/tools/bash_tool.py b/patchwork/common/tools/bash_tool.py new file mode 100644 index 000000000..cd6c51fa9 --- /dev/null +++ b/patchwork/common/tools/bash_tool.py @@ -0,0 +1,53 @@ +from __future__ import annotations + +import subprocess +from pathlib import Path + +from patchwork.common.tools.tool import Tool + + +class BashTool(Tool, tool_name="bash"): + def __init__(self, path: str): + super().__init__() + self.path = Path(path) + self.modified_files = [] + + @property + def json_schema(self) -> dict: + return { + "name": "bash", + "description": """Run commands in a bash shell + +* When invoking this tool, the contents of the "command" parameter does NOT need to be XML-escaped. +* You don't have access to the internet via this tool. +* You do have access to a mirror of common linux and python packages via apt and pip. +* State is persistent across command calls and discussions with the user. +* To inspect a particular line range of a file, e.g. lines 10-25, try 'sed -n 10,25p /path/to/the/file'. +* Please avoid commands that may produce a very large amount of output. +* Please run long lived commands in the background, e.g. 'sleep 10 &' or start a server in the background.""", + "input_schema": { + "type": "object", + "properties": {"command": {"type": "string", "description": "The bash command to run."}}, + "required": ["command"], + }, + } + + def execute( + self, + command: str | None = None, + *args, + **kwargs, + ) -> str: + """Execute editor commands on files in the repository.""" + if command is None: + return f"Error: `command` parameter must be set and cannot be empty" + + try: + result = subprocess.run( + command, shell=True, cwd=self.path, capture_output=True, text=True, timeout=60 # Add timeout for safety + ) + return result.stdout if result.returncode == 0 else f"Error: {result.stderr}" + except subprocess.TimeoutExpired: + return "Error: Command timed out after 60 seconds" + except Exception as e: + return f"Error: {str(e)}" diff --git a/patchwork/common/tools/code_edit_tools.py b/patchwork/common/tools/code_edit_tools.py new file mode 100644 index 000000000..6f3b7658d --- /dev/null +++ b/patchwork/common/tools/code_edit_tools.py @@ -0,0 +1,178 @@ +from __future__ import annotations + +import os +from pathlib import Path +from typing import Literal + +from patchwork.common.tools.tool import Tool + + +class CodeEditTool(Tool, tool_name="code_edit_tool"): + def __init__(self, path: str): + super().__init__() + self.repo_path = Path(path) + self.modified_files = set() + + @property + def json_schema(self) -> dict: + return { + "name": "code_edit_tool", + "description": """Custom editing tool for viewing, creating and editing files + +* State is persistent across command calls and discussions with the user +* If `path` is a file, `view` displays the result of applying `cat -n`. If `path` is a directory, `view` lists non-hidden files and directories up to 2 levels deep +* The `create` command cannot be used if the specified `path` already exists as a file +* If a `command` generates a long output, it will be truncated and marked with `` +* The `undo_edit` command will revert the last edit made to the file at `path` + +Notes for using the `str_replace` command: +* The `old_str` parameter should match EXACTLY one or more consecutive lines from the original file. Be mindful of whitespaces! +* If the `old_str` parameter is not unique in the file, the replacement will not be performed. Make sure to include enough context in `old_str` to make it unique +* The `new_str` parameter should contain the edited lines that should replace the `old_str`""", + "input_schema": { + "type": "object", + "properties": { + "command": { + "type": "string", + "enum": ["view", "create", "str_replace", "insert", "undo_edit"], + "description": "The commands to run. Allowed options are: `view`, `create`, `str_replace`, `insert`, `undo_edit`.", + }, + "file_text": { + "description": "Required parameter of `create` command, with the content of the file to be created.", + "type": "string", + }, + "insert_line": { + "description": "Required parameter of `insert` command. The `new_str` will be inserted AFTER the line `insert_line` of `path`.", + "type": "integer", + }, + "new_str": { + "description": "Required parameter of `str_replace` command containing the new string. Required parameter of `insert` command containing the string to insert.", + "type": "string", + }, + "old_str": { + "description": "Required parameter of `str_replace` command containing the string in `path` to replace.", + "type": "string", + }, + "path": { + "description": "Absolute path to file or directory, e.g. `/repo/file.py` or `/repo`.", + "type": "string", + }, + "view_range": { + "description": "Optional parameter of `view` command when `path` points to a file. If none is given, the full file is shown. If provided, the file will be shown in the indicated line number range, e.g. [11, 12] will show lines 11 and 12. Indexing at 1 to start. Setting `[start_line, -1]` shows all lines from `start_line` to the end of the file.", + "items": {"type": "integer"}, + "type": "array", + }, + }, + "required": ["command", "path"], + }, + } + + def execute( + self, + command: Literal["view", "create", "str_replace", "insert"] | None = None, + file_text: str = "", + insert_line: int | None = None, + new_str: str = "", + old_str: str | None = None, + path: str | None = None, + view_range: list[int] | None = None, + *args, + **kwargs, + ) -> str: + """Execute editor commands on files in the repository.""" + required_dict = dict(command=command, path=path) + missing_required = {k for k, v in required_dict.items() if v is None} + if len(missing_required) > 0: + return f"Error: `{'` and `'.join(missing_required)}` parameters must be set and cannot be empty" + + try: + if command == "view": + result = self.__view(path, view_range) + elif command == "create": + result = self.__create(file_text, path) + elif command == "str_replace": + result = self.__str_replace(new_str, old_str, path) + elif command == "insert": + result = self.__insert(insert_line, new_str, path) + else: + return f"Error: Unknown action {command}" + + if command in {"create", "str_replace", "insert"}: + self.modified_files.update({path.lstrip("/")}) + + return result + + except Exception as e: + return f"Error: {str(e)}" + + @property + def tool_records(self): + return dict(modified_files=[{"path": file} for file in self.modified_files]) + + def __get_abs_path(self, path: str): + abs_path = (self.repo_path / path.lstrip("/")).resolve() + if not abs_path.is_relative_to(self.repo_path): + raise ValueError(f"Path {path} contains illegal path traversal") + + return abs_path + + def __view(self, path, view_range): + abs_path = self.__get_abs_path(path) + if not abs_path.exists(): + return f"Error: Path {path} does not exist" + + if abs_path.is_file(): + with open(abs_path, "r") as f: + content = f.read() + + if view_range: + lines = content.splitlines() + start, end = view_range + content = "\n".join(lines[start - 1 : end]) + return content + elif abs_path.is_dir(): + result = [] + for root, dirs, files in os.walk(abs_path): + level = root[len(str(abs_path)) :].count(os.sep) + if level <= 2: + for d in dirs: + result.append(d) + for f in files: + result.append(f) + return "\n".join(result) + + def __create(self, file_text, path): + abs_path = self.__get_abs_path(path) + if abs_path.exists(): + return f"Error: File {path} already exists" + abs_path.parent.mkdir(parents=True, exist_ok=True) + abs_path.write_text(file_text) + return f"File created successfully at: {path}" + + def __str_replace(self, new_str, old_str, path): + abs_path = self.__get_abs_path(path) + if not abs_path.exists(): + return f"Error: File {path} does not exist" + if not abs_path.is_file(): + return f"Error: File {path} is not a file" + content = abs_path.read_text() + occurrences = content.count(old_str) + if occurrences != 1: + return f"Error: Found {occurrences} occurrences of old_str, expected exactly 1" + new_content = content.replace(old_str, new_str) + with open(abs_path, "w") as f: + f.write(new_content) + return "Replacement successful" + + def __insert(self, insert_line, new_str, path): + abs_path = self.__get_abs_path(path) + if not abs_path.is_file(): + return f"Error: File {path} does not exist or is not a file" + + lines = abs_path.read_text().splitlines(keepends=True) + if insert_line is None or insert_line < 1 or insert_line > len(lines): + return f"Error: Invalid insert line {insert_line}" + + lines.insert(insert_line, new_str + "\n") + abs_path.write_text("".join(lines)) + return "Insert successful" diff --git a/patchwork/common/tools/tool.py b/patchwork/common/tools/tool.py new file mode 100644 index 000000000..ad7e62989 --- /dev/null +++ b/patchwork/common/tools/tool.py @@ -0,0 +1,41 @@ +from abc import ABC, abstractmethod +from typing import Type + + +class Tool(ABC): + __internal_map: dict[str, Type["Tool"]] = dict() + + def __init_subclass__(cls, tool_name=None, **kwargs): + cls_name = tool_name or cls.__name__ + if cls_name in cls.__internal_map.keys(): + raise ValueError(f"Duplicate subclass name for class {cls.__name__}: {cls_name}") + cls.name = cls_name + Tool.__internal_map[cls_name] = cls + + @property + @abstractmethod + def json_schema(self) -> dict: + ... + + @abstractmethod + def execute(self, *args, **kwargs) -> str: + ... + + @staticmethod + def get_tools(**kwargs) -> dict[str, "Tool"]: + rv = dict() + for k, v in Tool.__internal_map.items(): + try: + rv[k] = v(**kwargs) + except Exception as e: + continue + + return rv + + @staticmethod + def get_description(tooling: "ToolProtocol") -> str: + return tooling.json_schema.get("description", "") + + @staticmethod + def get_parameters(tooling: "ToolProtocol") -> str: + return ", ".join(tooling.json_schema.get("required", [])) diff --git a/patchwork/common/utils/filter_paths.py b/patchwork/common/utils/filter_paths.py index 928e5a609..d511350fe 100644 --- a/patchwork/common/utils/filter_paths.py +++ b/patchwork/common/utils/filter_paths.py @@ -35,7 +35,9 @@ class PathFilter: - def __init__(self, base_path: str | Path = Path.cwd(), ignored_groks: set[str] | None = None, max_depth: int = -1): + def __init__( + self, *, base_path: str | Path = Path.cwd(), ignored_groks: set[str] | None = None, max_depth: int = -1 + ): self.base_path = Path(base_path) self.max_depth = max_depth self.__ignored_groks = ignored_groks if ignored_groks is not None else set() @@ -59,6 +61,12 @@ def __get_gitignore_ignored_groks(self) -> set[str]: return ignored_groks def get_grok_ignored(self, file_to_test: str | Path) -> str | None: + """ + Get the grok string that causes the file to be ignored + + :param file_to_test: file to test if it is ignored because of depth level + :return: Grok string if the file is ignored else None + """ file = Path(file_to_test) paths_to_test = [file] + list(file.parents) for ignored_grok in self.__ignored_groks: @@ -68,10 +76,17 @@ def get_grok_ignored(self, file_to_test: str | Path) -> str | None: return None def get_depth_ignored(self, file_to_test: str | Path) -> int | None: - file = Path(file_to_test) + """ + Get depth of file that causes the file to be ignored. + + :param file_to_test: file to test if it is ignored because of depth level + :return: Depth of file if the file is ignored else None. + """ if self.max_depth == -1: return None + file = Path(file_to_test) + try: file_depth = len(file.relative_to(self.base_path).parts) except ValueError: diff --git a/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py b/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py index 0062d5f4d..b59b95ee1 100644 --- a/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py +++ b/patchwork/patchflows/GenerateDiagram/GenerateDiagram.py @@ -1,19 +1,15 @@ -import json from pathlib import Path + import yaml from patchwork.common.utils.step_typing import validate_steps_with_inputs from patchwork.step import Step -from patchwork.steps import ( - LLM, - CallCode2Prompt, - ModifyCode, - PR -) +from patchwork.steps import LLM, PR, CallCode2Prompt, ModifyCode _DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" _DEFAULT_PROMPT_JSON = Path(__file__).parent / "default_prompt.json" + class GenerateDiagram(Step): def __init__(self, inputs): super().__init__(inputs) @@ -21,7 +17,7 @@ def __init__(self, inputs): final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) if final_inputs is None: final_inputs = {} - + final_inputs.update(inputs) final_inputs["prompt_id"] = "GenerateDiagram" @@ -33,7 +29,7 @@ def __init__(self, inputs): final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" validate_steps_with_inputs( - set(final_inputs.keys()).union({"prompt_values","files_to_patch"}), LLM, CallCode2Prompt,ModifyCode,PR + set(final_inputs.keys()).union({"prompt_values", "files_to_patch"}), LLM, CallCode2Prompt, ModifyCode, PR ) self.base_path = final_inputs["base_path"] @@ -41,7 +37,7 @@ def __init__(self, inputs): def run(self): outputs = CallCode2Prompt(self.inputs).run() - outputs['uri'] = self.base_path + outputs["uri"] = self.base_path self.inputs["response_partitions"] = {"patch": ["```", "\n", "```"]} self.inputs["files_to_patch"] = self.inputs["prompt_values"] = [outputs] outputs = LLM(self.inputs).run() diff --git a/patchwork/patchflows/GenerateUnitTests/GenerateUnitTests.py b/patchwork/patchflows/GenerateUnitTests/GenerateUnitTests.py index c344d3030..b82abe294 100644 --- a/patchwork/patchflows/GenerateUnitTests/GenerateUnitTests.py +++ b/patchwork/patchflows/GenerateUnitTests/GenerateUnitTests.py @@ -1,19 +1,15 @@ -import json from pathlib import Path + import yaml from patchwork.common.utils.step_typing import validate_steps_with_inputs from patchwork.step import Step -from patchwork.steps import ( - LLM, - CallCode2Prompt, - ModifyCode, - PR -) +from patchwork.steps import LLM, PR, CallCode2Prompt, ModifyCode _DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" _DEFAULT_PROMPT_JSON = Path(__file__).parent / "default_prompt.json" + class GenerateUnitTests(Step): def __init__(self, inputs): super().__init__(inputs) @@ -21,7 +17,7 @@ def __init__(self, inputs): final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) if final_inputs is None: final_inputs = {} - + final_inputs.update(inputs) final_inputs["prompt_id"] = "GenerateUnitTests" @@ -37,16 +33,16 @@ def __init__(self, inputs): final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" validate_steps_with_inputs( - set(final_inputs.keys()).union({"prompt_values","files_to_patch"}), LLM, CallCode2Prompt,ModifyCode,PR + set(final_inputs.keys()).union({"prompt_values", "files_to_patch"}), LLM, CallCode2Prompt, ModifyCode, PR ) self.inputs = final_inputs def run(self): outputs = CallCode2Prompt(self.inputs).run() new_file_name = f"test_file.{self.inputs['test_file_extension']}" - new_file_path = Path(outputs['uri']).with_name(new_file_name) - Path(outputs['uri']).rename(new_file_path) - outputs['uri'] = str(new_file_path) + new_file_path = Path(outputs["uri"]).with_name(new_file_name) + Path(outputs["uri"]).rename(new_file_path) + outputs["uri"] = str(new_file_path) self.inputs["response_partitions"] = {"patch": ["```", "\n", "```"]} self.inputs["files_to_patch"] = self.inputs["prompt_values"] = [outputs] outputs = LLM(self.inputs).run() diff --git a/patchwork/patchflows/ResolveIssue/ResolveIssue.py b/patchwork/patchflows/ResolveIssue/ResolveIssue.py index 3ba28ea2e..22bef8101 100644 --- a/patchwork/patchflows/ResolveIssue/ResolveIssue.py +++ b/patchwork/patchflows/ResolveIssue/ResolveIssue.py @@ -5,123 +5,38 @@ from patchwork.common.utils.progress_bar import PatchflowProgressBar from patchwork.common.utils.step_typing import validate_steps_with_inputs from patchwork.step import Step -from patchwork.steps import ( - LLM, - PR, - CallLLM, - CommitChanges, - CreateIssueComment, - CreatePR, - ExtractModelResponse, - GenerateCodeRepositoryEmbeddings, - ModifyCode, - PreparePR, - PreparePrompt, - QueryEmbeddings, - ReadIssues, -) +from patchwork.steps import PR, FixIssue, ReadIssues _DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" -_DEFAULT_PROMPT_JSON = Path(__file__).parent / "prompt.json" class ResolveIssue(Step): def __init__(self, inputs: dict): PatchflowProgressBar(self).register_steps( - CallLLM, - CommitChanges, - CreateIssueComment, - CreatePR, - ExtractModelResponse, - GenerateCodeRepositoryEmbeddings, - ModifyCode, - PreparePR, - PreparePrompt, - QueryEmbeddings, ReadIssues, + FixIssue, + PR, ) - final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) - - if final_inputs is None: - final_inputs = {} + final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) or dict() final_inputs.update(inputs) - if "prompt_template_file" not in final_inputs.keys(): - final_inputs["prompt_template_file"] = _DEFAULT_PROMPT_JSON - final_inputs["pr_title"] = f"PatchWork {self.__class__.__name__}" final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" validate_steps_with_inputs( - set(final_inputs.keys()).union({"texts", "issue_text"}), - GenerateCodeRepositoryEmbeddings, + {"issue_description"}.union(final_inputs.keys()), ReadIssues, - QueryEmbeddings, - CreateIssueComment, + FixIssue, + PR, ) - self.fix_issue = bool(final_inputs.get("fix_issue", False)) self.inputs = final_inputs def run(self) -> dict: - outputs = GenerateCodeRepositoryEmbeddings(self.inputs).run() - self.inputs.update(outputs) - outputs = ReadIssues(self.inputs).run() + self.inputs["issue_description"] = outputs + outputs = FixIssue(self.inputs).run() self.inputs.update(outputs) - - self.inputs["texts"] = self.inputs.get("issue_body") or self.inputs.get("issue_title") - - outputs = QueryEmbeddings(self.inputs).run() - self.inputs.update(outputs) - - issue_list_text = "* " + "\n* ".join([result["path"] for result in self.inputs["embedding_results"]]) - self.inputs[ - "issue_text" - ] = f"""\ -The following files in the repository may be relevant to the issue: - ------- - -{issue_list_text} -""" - - outputs = CreateIssueComment(self.inputs).run() - self.inputs.update(outputs) - - if not self.fix_issue: - return self.inputs - - extracted_code_contexts = [] - # Call LLM to make necessary updates to files to resolve the issue - for result in self.inputs["embedding_results"]: - with open(result["path"], "r") as file: - file_content = file.read() - lines = file_content.splitlines(keepends=True) - extracted_code_contexts.append( - { - "uri": result["path"], - "startLine": 0, - "endLine": len(lines), - "affectedCode": file_content, - "messageText": self.inputs["texts"], - } - ) - - self.inputs["prompt_values"] = extracted_code_contexts - self.inputs["files_to_patch"] = extracted_code_contexts - self.inputs["prompt_id"] = "resolve_issue" - self.inputs["response_partitions"] = { - "patch": ["Fixed Code:", "```", "\n", "```"], - } - outputs = LLM(self.inputs).run() - self.inputs.update(outputs) - - # Modify code files with the suggested changes - outputs = ModifyCode(self.inputs).run() - self.inputs.update(outputs) - - # Commit changes and create PR self.inputs["pr_header"] = f'This pull request from patchwork fixes {self.inputs["issue_url"]}.' outputs = PR(self.inputs).run() self.inputs.update(outputs) diff --git a/patchwork/patchflows/__init__.py b/patchwork/patchflows/__init__.py index e5c59ec5b..3345dfec5 100644 --- a/patchwork/patchflows/__init__.py +++ b/patchwork/patchflows/__init__.py @@ -1,10 +1,19 @@ from .AutoFix.AutoFix import AutoFix from .DependencyUpgrade.DependencyUpgrade import DependencyUpgrade +from .GenerateDiagram.GenerateDiagram import GenerateDiagram from .GenerateDocstring.GenerateDocstring import GenerateDocstring from .GenerateREADME.GenerateREADME import GenerateREADME +from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests from .PRReview.PRReview import PRReview from .ResolveIssue.ResolveIssue import ResolveIssue -from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests -from .GenerateDiagram.GenerateDiagram import GenerateDiagram -__all__ = ["AutoFix", "DependencyUpgrade", "GenerateREADME", "PRReview", "ResolveIssue", "GenerateDocstring", "GenerateUnitTests","GenerateDiagram"] +__all__ = [ + "AutoFix", + "DependencyUpgrade", + "GenerateREADME", + "PRReview", + "ResolveIssue", + "GenerateDocstring", + "GenerateUnitTests", + "GenerateDiagram", +] diff --git a/patchwork/steps/CommitChanges/CommitChanges.py b/patchwork/steps/CommitChanges/CommitChanges.py index f21223fc4..3cd71c617 100644 --- a/patchwork/steps/CommitChanges/CommitChanges.py +++ b/patchwork/steps/CommitChanges/CommitChanges.py @@ -126,7 +126,7 @@ def __init__(self, inputs: dict): def __get_repo_tracked_modified_files(self, repo: Repo) -> set[Path]: repo_dir_path = Path(repo.working_tree_dir) - path_filter = PathFilter(repo.working_tree_dir) + path_filter = PathFilter(base_path=repo.working_tree_dir) repo_changed_files = set() for item in repo.index.diff(None): @@ -167,7 +167,7 @@ def run(self) -> dict: ): for modified_file in true_modified_files: repo.git.add(modified_file) - commit_with_msg(repo, f"Patched {modified_file}") + commit_with_msg(repo, f"Patched {modified_file.relative_to(repo_dir_path)}") return dict( base_branch=from_branch, diff --git a/patchwork/steps/FixIssue/FixIssue.py b/patchwork/steps/FixIssue/FixIssue.py new file mode 100644 index 000000000..cb2df70b3 --- /dev/null +++ b/patchwork/steps/FixIssue/FixIssue.py @@ -0,0 +1,127 @@ +import re +from pathlib import Path +from typing import Any, Optional + +from git import Repo +from openai.types.chat import ChatCompletionMessageParam + +from patchwork.common.client.llm.aio import AioLlmClient +from patchwork.common.client.llm.protocol import LlmClient +from patchwork.common.constants import TOKEN_URL +from patchwork.common.multiturn_strategy.analyze_implement import ( + STAGE, + AnalyzeImplementStrategy, +) +from patchwork.common.tools import CodeEditTool, Tool +from patchwork.logger import logger +from patchwork.step import Step +from patchwork.steps.FixIssue.typed import FixIssueInputs, FixIssueOutputs + + +class _ResolveIssue(AnalyzeImplementStrategy): + def __init__(self, repo_path: str, llm_client: LlmClient, issue_description: Any, **kwargs): + self.tool_set = Tool.get_tools(path=repo_path) + super().__init__( + llm_client=llm_client, + initial_template_data=dict(issue=issue_description), + analysis_prompt_template=""" +. + +I've uploaded a code repository in the current working directory (not in /tmp/inputs). + +Consider the following issue: + + +{{issue}} + + +Let's first explore and analyze the repository to understand where the issue is located. +Please analyze the repository structure and try to locate the specific files and code sections that need to be modified. + +1. First explore the repo structure +2. Identify the relevant files that likely need changes +3. Create and run a script to reproduce the error +4. Once you've confirmed the error, identify the specific code sections that need to be modified + +Provide your findings in this format: + +List the relevant files that need changes +The error reproduction script and its output +Description of the specific changes needed +""", + implementation_prompt_template=""" +. + +I've uploaded a code repository in the current working directory (not in /tmp/inputs). + +Based on our previous analysis: + + +{{analysis_results}} + + +Let's implement the necessary changes: + +1. Edit the sourcecode of the repo to resolve the issue +2. Rerun the reproduction script to confirm the error is fixed +3. Think about edge cases and make sure your fix handles them as well + +I've already taken care of all changes to any of the test files described in the PR. +This means you DON'T have to modify the testing logic or any of the tests in any way! + +Let me know when you're done by outputting .""", + tool_set=self.tool_set, + **kwargs, + ) + + def extract_analysis_message(self, message: ChatCompletionMessageParam) -> Optional[dict[str, str]]: + analysis_match = re.search(r"(.*?)", message.get("content"), re.DOTALL) + if not analysis_match: + return None + + content = analysis_match.group(1) + sections = dict() + for section in ["files", "error_reproduction", "changes_needed"]: + section_match = re.search(f"<{section}>(.*?)", content, re.DOTALL) + sections[section] = section_match.group(1).strip() if section_match else "" + return sections + + def is_stop(self, messages: list[ChatCompletionMessageParam]) -> bool: + if self._stage != STAGE.IMPLEMENT: + return False + last_message = messages[-1] + return "" in last_message.get("content") + + +class FixIssue(Step, input_class=FixIssueInputs, output_class=FixIssueOutputs): + def __init__(self, inputs): + super().__init__(inputs) + self.base_path = inputs.get("base_path") + if self.base_path is None: + repo = Repo(Path.cwd(), search_parent_directories=True) + self.base_path = repo.working_tree_dir + + llm_client = AioLlmClient.create_aio_client(inputs) + if llm_client is None: + raise ValueError( + f"Model API key not found.\n" + f'Please login at: "{TOKEN_URL}",\n' + "Please go to the Integration's tab and generate an API key.\n" + "Please copy the access token that is generated, " + "and add `--patched_api_key=` to the command line.\n" + "\n" + "If you are using an OpenAI API Key, please set `--openai_api_key=`.\n" + ) + + self.multiturn_llm_call = _ResolveIssue( + repo_path=self.base_path, + llm_client=llm_client, + issue_description=inputs["issue_description"], + ) + + def run(self): + self.multiturn_llm_call.execute(limit=100) + for tool in self.multiturn_llm_call.tool_set.values(): + if isinstance(tool, CodeEditTool): + return tool.tool_records + return dict() diff --git a/patchwork/steps/FixIssue/README.md b/patchwork/steps/FixIssue/README.md new file mode 100644 index 000000000..bb6bb8c57 --- /dev/null +++ b/patchwork/steps/FixIssue/README.md @@ -0,0 +1,57 @@ +# `FixIssue` Module Documentation + +This documentation provides an overview of the `FixIssue` module in the `patchwork/steps/FixIssue/` directory, detailing its purpose, inputs, and outputs for developers working with the code. + +## Overview + +The FixIssue module is part of a system aimed at automating the analysis and resolution of coding issues within a software repository. It leverages language model clients (such as OpenAI's API) to understand the code structure, identify problems, propose changes, and test them. The module defines input and output data structures and contains the main logic for analyzing and fixing code issues. + +## Components + +The module is divided into several components: + +- **typed.py**: Defines the input and output data structure types needed for the FixIssue step. +- **FixIssue.py**: Contains the main implementation logic to carry out issue analysis and resolution. +- **__init__.py**: Placeholder for package initialization, currently empty. + +## Inputs + +### FixIssueInputs + +Defined in `typed.py`, this structure specifies the necessary inputs for the module: + +- **Required** + - `issue_description` (str): A description of the coding issue to be resolved. + +- **Optional** (with conditions via `Annotated` attributes): + - `base_path` (str): The base path to the repository (marked as a path). + - `openai_api_key` (str): API key for OpenAI services. + - `anthropic_api_key` (str): API key for Anthropic services. + - `patched_api_key` (str): API key alternative, includes a message prompt if not present. + - `google_api_key` (str): API key for Google services. + +## Outputs + +### FixIssueOutputs + +Defined in `typed.py`, representing the output of the FixIssue step: + +- `modified_files` (List[Dict]): A list of modified files and their respective changes made by the tool. + +## Usage + +The typical usage involves defining inputs, initializing the `FixIssue` class, and executing the `run()` method to process the issue. This would be suitable for development automation tools or CI/CD pipelines that automatically resolve identified code issues. + +## Functions and Classes + +### _ResolveIssue + +A private class that extends `AnalyzeImplementStrategy`, implementing the logic to analyze and fix issues identified within a repository. It interacts with the codebase and uses language models for guidance. + +### FixIssue + +A `Step` subclass that orchestrates the setup of environment and execution of issue resolution based on the provided inputs. It initializes configurations, clients, and strategies, and runs the multiturn language model operation until the issue is resolved. + +## Conclusion + +The `FixIssue` module is a sophisticated tool designed for automated issue detection and correction in software repositories. It wraps around advanced language models to offer intelligent analysis and implementations, thereby enhancing the code maintenance process. diff --git a/patchwork/steps/FixIssue/__init__.py b/patchwork/steps/FixIssue/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/patchwork/steps/FixIssue/typed.py b/patchwork/steps/FixIssue/typed.py new file mode 100644 index 000000000..7c88e21b5 --- /dev/null +++ b/patchwork/steps/FixIssue/typed.py @@ -0,0 +1,39 @@ +from typing_extensions import Annotated, Dict, TypedDict, List + +from patchwork.common.constants import TOKEN_URL +from patchwork.common.utils.step_typing import StepTypeConfig + + +class __FixIssueRequiredInputs(TypedDict): + issue_description: str + + +class FixIssueInputs(__FixIssueRequiredInputs, total=False): + base_path: Annotated[str, StepTypeConfig(is_path=True)] + openai_api_key: Annotated[ + str, StepTypeConfig(is_config=True, or_op=["patched_api_key", "google_api_key", "anthropic_api_key"]) + ] + anthropic_api_key: Annotated[ + str, StepTypeConfig(is_config=True, or_op=["patched_api_key", "google_api_key", "openai_api_key"]) + ] + patched_api_key: Annotated[ + str, + StepTypeConfig( + is_config=True, + or_op=["openai_api_key", "google_api_key", "anthropic_api_key"], + msg=f"""\ +Model API key not found. +Please login at: "{TOKEN_URL}" +Please go to the Integration's tab and generate an API key. +Please copy the access token that is generated, and add `--patched_api_key=` to the command line. + +If you are using a OpenAI API Key, please set `--openai_api_key=`.""", + ), + ] + google_api_key: Annotated[ + str, StepTypeConfig(is_config=True, or_op=["patched_api_key", "openai_api_key", "anthropic_api_key"]) + ] + + +class FixIssueOutputs(TypedDict): + modified_files: List[Dict] diff --git a/patchwork/steps/ModifyCode/ModifyCode.py b/patchwork/steps/ModifyCode/ModifyCode.py index d8a2251d2..f7c6d7e4f 100644 --- a/patchwork/steps/ModifyCode/ModifyCode.py +++ b/patchwork/steps/ModifyCode/ModifyCode.py @@ -88,7 +88,7 @@ def run(self) -> dict: if new_code is None: continue - + replace_code_in_file(uri, start_line, end_line, new_code) modified_code_file = dict(path=uri, start_line=start_line, end_line=end_line, **extracted_response) modified_code_files.append(modified_code_file) diff --git a/patchwork/steps/PreparePrompt/PreparePrompt.py b/patchwork/steps/PreparePrompt/PreparePrompt.py index 6c71cf468..a9d78767a 100644 --- a/patchwork/steps/PreparePrompt/PreparePrompt.py +++ b/patchwork/steps/PreparePrompt/PreparePrompt.py @@ -6,14 +6,11 @@ from pathlib import Path import chevron -from chevron import render from patchwork.common.constants import PROMPT_TEMPLATE_FILE_KEY from patchwork.logger import logger from patchwork.step import Step, StepStatus -chevron.render.__globals__["_html_escape"] = lambda string: string - def _find_by_prompt_template_file(prompt_template_file: str | None, prompt_id: str | None) -> list[dict] | None: if prompt_template_file is None or prompt_id is None: @@ -79,6 +76,7 @@ def run(self) -> dict: return dict(prompts=[]) prompts = [] + chevron.render.__globals__["_html_escape"] = lambda string: string for prompt_value in self.prompt_values: dict_value = prompt_value if not isinstance(dict_value, dict): @@ -88,7 +86,7 @@ def run(self) -> dict: for prompt_part in self.prompt_template: prompt_instance = {} for key, value in prompt_part.items(): - new_value = render( + new_value = chevron.render( template=value, data=dict_value, partials_path=None, diff --git a/patchwork/steps/ReadIssues/ReadIssues.py b/patchwork/steps/ReadIssues/ReadIssues.py index 921880944..63abc3809 100644 --- a/patchwork/steps/ReadIssues/ReadIssues.py +++ b/patchwork/steps/ReadIssues/ReadIssues.py @@ -34,4 +34,11 @@ def run(self) -> dict: issue_title=self.issue.get("title"), issue_body=self.issue.get("body"), issue_comments=self.issue.get("comments"), + issue_description=f"""\ +Title: +{self.issue.get("title")} + +Description: +{self.issue.get("body")} +""" ) diff --git a/patchwork/steps/ReadIssues/typed.py b/patchwork/steps/ReadIssues/typed.py index 57ac86e95..285107a45 100644 --- a/patchwork/steps/ReadIssues/typed.py +++ b/patchwork/steps/ReadIssues/typed.py @@ -17,3 +17,4 @@ class ReadIssuesOutputs(TypedDict): issue_title: str issue_body: str issue_comments: List[str] + issue_description: str diff --git a/patchwork/steps/__init__.py b/patchwork/steps/__init__.py index bb043d8af..d74629a37 100644 --- a/patchwork/steps/__init__.py +++ b/patchwork/steps/__init__.py @@ -21,6 +21,7 @@ ExtractPackageManagerFile, ) from patchwork.steps.FilterBySimilarity.FilterBySimilarity import FilterBySimilarity +from patchwork.steps.FixIssue.FixIssue import FixIssue from patchwork.steps.GenerateCodeRepositoryEmbeddings.GenerateCodeRepositoryEmbeddings import ( GenerateCodeRepositoryEmbeddings, ) @@ -87,6 +88,7 @@ "ReadPRDiffs", "ReadPRDiffsPB", "ReadPRs", + "ResolveIssue", "ScanDepscan", "ScanSemgrep", "SimplifiedLLM", diff --git a/poetry.lock b/poetry.lock index 868c1bcce..7dfae3396 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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-content-hash = "d8957d36b5fe7654a7cc65bad793fc54f12a0af19715a41ac42db25b04f701fe" +content-hash = "2c95f1c29e3671017b5f9ccc2f4cf42eb11481d78ffafe36cbca25758c496eb2" diff --git a/pyproject.toml b/pyproject.toml index ca94854be..5728c0ae7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.78" +version = "0.0.79" description = "" authors = ["patched.codes"] license = "AGPL" @@ -41,7 +41,7 @@ requests = "~2.31.0" chardet = "~5.2.0" attrs = "~23.2.0" google-generativeai = "~0.8.1" -anthropic = "~0.34.2" +anthropic = "~0.40.0" rich = "~13.7.1" chevron = "~0.14.0" giturlparse = "~0.12.0" diff --git a/tests/steps/test_ReadIssues.py b/tests/steps/test_ReadIssues.py index 0fa560418..0e66b5e99 100644 --- a/tests/steps/test_ReadIssues.py +++ b/tests/steps/test_ReadIssues.py @@ -9,12 +9,12 @@ ( {"github_api_key": "key"}, "patchwork.common.client.scm.GithubClient.find_issue_by_url", - dict(title="", body="github pr body", comments=["nothing", "there"]), + dict(title="", body="github pr body", comments=["nothing", "there"], description="Title:\n\n\nDescription:\ngithub pr body\n"), ), ( {"gitlab_api_key": "key"}, "patchwork.common.client.scm.GitlabClient.find_issue_by_url", - dict(title="gitlab pr title", body="", comments=["something", "here"]), + dict(title="gitlab pr title", body="", comments=["something", "here"], description="Title:\ngitlab pr title\n\nDescription:\n\n"), ), ], ) From b778445250cc22ab3e01a4cb2766706f810c90a8 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Thu, 5 Dec 2024 16:19:39 +0800 Subject: [PATCH 04/22] Fix path resolution issue at code edit tools (#1054) * fix path resolution issue at code edit tools * bump version --- patchwork/common/tools/code_edit_tools.py | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/patchwork/common/tools/code_edit_tools.py b/patchwork/common/tools/code_edit_tools.py index 6f3b7658d..fb44ea115 100644 --- a/patchwork/common/tools/code_edit_tools.py +++ b/patchwork/common/tools/code_edit_tools.py @@ -111,7 +111,7 @@ def tool_records(self): def __get_abs_path(self, path: str): abs_path = (self.repo_path / path.lstrip("/")).resolve() - if not abs_path.is_relative_to(self.repo_path): + if not abs_path.is_relative_to(self.repo_path.resolve()): raise ValueError(f"Path {path} contains illegal path traversal") return abs_path diff --git a/pyproject.toml b/pyproject.toml index 5728c0ae7..32eebbbc6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.79" +version = "0.0.80" description = "" authors = ["patched.codes"] license = "AGPL" From 8f8c1484570c40187690b420d56cd2f52fa325ab Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Fri, 6 Dec 2024 15:08:59 +0800 Subject: [PATCH 05/22] fix (#1066) * fix * bump version --- patchwork/common/client/llm/anthropic.py | 103 ++++++++++++----------- pyproject.toml | 2 +- 2 files changed, 54 insertions(+), 51 deletions(-) diff --git a/patchwork/common/client/llm/anthropic.py b/patchwork/common/client/llm/anthropic.py index 081445c67..0bc7f98ae 100644 --- a/patchwork/common/client/llm/anthropic.py +++ b/patchwork/common/client/llm/anthropic.py @@ -128,22 +128,22 @@ def __adapt_input_messages(self, messages: Iterable[ChatCompletionMessageParam]) return new_messages def __adapt_chat_completion_request( - self, - messages: Iterable[ChatCompletionMessageParam], - model: str, - frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, - logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, - logprobs: Optional[bool] | NotGiven = NOT_GIVEN, - max_tokens: Optional[int] | NotGiven = NOT_GIVEN, - n: Optional[int] | NotGiven = NOT_GIVEN, - presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, - response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, - stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, - temperature: Optional[float] | NotGiven = NOT_GIVEN, - tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, - tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, - top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, - top_p: Optional[float] | NotGiven = NOT_GIVEN, + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, ): system: Union[str, Iterable[TextBlockParam]] | NotGiven = NOT_GIVEN adapted_messages = self.__adapt_input_messages(messages) @@ -171,6 +171,9 @@ def __adapt_chat_completion_request( elif tool_choice_type == "none": tool_choice = NOT_GIVEN + anthropic_tools = NOT_GIVEN + if tools is not None and tools is not NOT_GIVEN: + anthropic_tools = [tool.get("function") for tool in tools if tool.get("function") is not None] input_kwargs = dict( messages=adapted_messages, system=system, @@ -178,7 +181,7 @@ def __adapt_chat_completion_request( model=model, stop_sequences=[stop] if isinstance(stop, str) else stop, temperature=temperature, - tools=[tool.get("function") for tool in tools if tool.get("function") is not None], + tools=anthropic_tools, tool_choice=tool_choice, top_p=top_p, ) @@ -204,22 +207,22 @@ def is_model_supported(self, model: str) -> bool: return model in self.__definitely_allowed_models or model.startswith(self.__allowed_model_prefix) def is_prompt_supported( - self, - messages: Iterable[ChatCompletionMessageParam], - model: str, - frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, - logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, - logprobs: Optional[bool] | NotGiven = NOT_GIVEN, - max_tokens: Optional[int] | NotGiven = NOT_GIVEN, - n: Optional[int] | NotGiven = NOT_GIVEN, - presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, - response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, - stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, - temperature: Optional[float] | NotGiven = NOT_GIVEN, - tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, - tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, - top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, - top_p: Optional[float] | NotGiven = NOT_GIVEN, + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> int: model_limit = self.__get_model_limit(model) input_kwargs = self.__adapt_chat_completion_request( @@ -248,27 +251,27 @@ def is_prompt_supported( return model_limit - message_token_count.input_tokens def truncate_messages( - self, messages: Iterable[ChatCompletionMessageParam], model: str + self, messages: Iterable[ChatCompletionMessageParam], model: str ) -> Iterable[ChatCompletionMessageParam]: return self._truncate_messages(self, messages, model) def chat_completion( - self, - messages: Iterable[ChatCompletionMessageParam], - model: str, - frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, - logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, - logprobs: Optional[bool] | NotGiven = NOT_GIVEN, - max_tokens: Optional[int] | NotGiven = NOT_GIVEN, - n: Optional[int] | NotGiven = NOT_GIVEN, - presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, - response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, - stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, - temperature: Optional[float] | NotGiven = NOT_GIVEN, - tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, - tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, - top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, - top_p: Optional[float] | NotGiven = NOT_GIVEN, + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> ChatCompletion: input_kwargs = self.__adapt_chat_completion_request( messages=messages, diff --git a/pyproject.toml b/pyproject.toml index 32eebbbc6..740a88437 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.80" +version = "0.0.81" description = "" authors = ["patched.codes"] license = "AGPL" From c65a97bb947317aaf888ce62fdf16c7ebadd89c2 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Tue, 10 Dec 2024 15:04:09 +0800 Subject: [PATCH 06/22] Better line-ending handling and better prompts to direct the llm to the right path immediately (#1079) --- patchwork/common/tools/bash_tool.py | 7 ++- patchwork/common/tools/code_edit_tools.py | 72 ++++++++++++----------- patchwork/common/utils/utils.py | 20 ++++++- patchwork/steps/FixIssue/FixIssue.py | 19 +++--- pyproject.toml | 2 +- 5 files changed, 72 insertions(+), 48 deletions(-) diff --git a/patchwork/common/tools/bash_tool.py b/patchwork/common/tools/bash_tool.py index cd6c51fa9..77e9052ae 100644 --- a/patchwork/common/tools/bash_tool.py +++ b/patchwork/common/tools/bash_tool.py @@ -7,7 +7,7 @@ class BashTool(Tool, tool_name="bash"): - def __init__(self, path: str): + def __init__(self, path: Path): super().__init__() self.path = Path(path) self.modified_files = [] @@ -16,7 +16,7 @@ def __init__(self, path: str): def json_schema(self) -> dict: return { "name": "bash", - "description": """Run commands in a bash shell + "description": f"""Run commands in a bash shell * When invoking this tool, the contents of the "command" parameter does NOT need to be XML-escaped. * You don't have access to the internet via this tool. @@ -24,7 +24,8 @@ def json_schema(self) -> dict: * State is persistent across command calls and discussions with the user. * To inspect a particular line range of a file, e.g. lines 10-25, try 'sed -n 10,25p /path/to/the/file'. * Please avoid commands that may produce a very large amount of output. -* Please run long lived commands in the background, e.g. 'sleep 10 &' or start a server in the background.""", +* Please run long lived commands in the background, e.g. 'sleep 10 &' or start a server in the background. +* The working directory is always {self.path}""", "input_schema": { "type": "object", "properties": {"command": {"type": "string", "description": "The bash command to run."}}, diff --git a/patchwork/common/tools/code_edit_tools.py b/patchwork/common/tools/code_edit_tools.py index fb44ea115..387226c9d 100644 --- a/patchwork/common/tools/code_edit_tools.py +++ b/patchwork/common/tools/code_edit_tools.py @@ -5,25 +5,28 @@ from typing import Literal from patchwork.common.tools.tool import Tool +from patchwork.common.utils.utils import detect_newline class CodeEditTool(Tool, tool_name="code_edit_tool"): - def __init__(self, path: str): + def __init__(self, path: Path): super().__init__() - self.repo_path = Path(path) + self.repo_path = path self.modified_files = set() @property def json_schema(self) -> dict: return { "name": "code_edit_tool", - "description": """Custom editing tool for viewing, creating and editing files + "description": f"""\ +Custom editing tool for viewing, creating and editing files * State is persistent across command calls and discussions with the user * If `path` is a file, `view` displays the result of applying `cat -n`. If `path` is a directory, `view` lists non-hidden files and directories up to 2 levels deep * The `create` command cannot be used if the specified `path` already exists as a file * If a `command` generates a long output, it will be truncated and marked with `` * The `undo_edit` command will revert the last edit made to the file at `path` +* The working directory is always {self.repo_path} Notes for using the `str_replace` command: * The `old_str` parameter should match EXACTLY one or more consecutive lines from the original file. Be mindful of whitespaces! @@ -86,40 +89,39 @@ def execute( return f"Error: `{'` and `'.join(missing_required)}` parameters must be set and cannot be empty" try: + abs_path = self.__get_abs_path(path) if command == "view": - result = self.__view(path, view_range) + result = self.__view(abs_path, view_range) elif command == "create": - result = self.__create(file_text, path) + result = self.__create(file_text, abs_path) elif command == "str_replace": - result = self.__str_replace(new_str, old_str, path) + result = self.__str_replace(new_str, old_str, abs_path) elif command == "insert": - result = self.__insert(insert_line, new_str, path) + result = self.__insert(insert_line, new_str, abs_path) else: return f"Error: Unknown action {command}" - - if command in {"create", "str_replace", "insert"}: - self.modified_files.update({path.lstrip("/")}) - - return result - except Exception as e: return f"Error: {str(e)}" + if command in {"create", "str_replace", "insert"}: + self.modified_files.update({abs_path.relative_to(self.repo_path)}) + + return result + @property def tool_records(self): - return dict(modified_files=[{"path": file} for file in self.modified_files]) + return dict(modified_files=[{"path": str(file)} for file in self.modified_files]) def __get_abs_path(self, path: str): - abs_path = (self.repo_path / path.lstrip("/")).resolve() - if not abs_path.is_relative_to(self.repo_path.resolve()): + wanted_path = Path(path).resolve() + if wanted_path.is_relative_to(self.repo_path): + return wanted_path + else: raise ValueError(f"Path {path} contains illegal path traversal") - return abs_path - - def __view(self, path, view_range): - abs_path = self.__get_abs_path(path) + def __view(self, abs_path: Path, view_range): if not abs_path.exists(): - return f"Error: Path {path} does not exist" + return f"Error: Path {abs_path} does not exist" if abs_path.is_file(): with open(abs_path, "r") as f: @@ -141,38 +143,38 @@ def __view(self, path, view_range): result.append(f) return "\n".join(result) - def __create(self, file_text, path): - abs_path = self.__get_abs_path(path) + def __create(self, file_text, abs_path): if abs_path.exists(): - return f"Error: File {path} already exists" + return f"Error: File {abs_path} already exists" abs_path.parent.mkdir(parents=True, exist_ok=True) abs_path.write_text(file_text) - return f"File created successfully at: {path}" + return f"File created successfully at: {abs_path}" - def __str_replace(self, new_str, old_str, path): - abs_path = self.__get_abs_path(path) + def __str_replace(self, new_str, old_str, abs_path): if not abs_path.exists(): - return f"Error: File {path} does not exist" + return f"Error: File {abs_path} does not exist" if not abs_path.is_file(): - return f"Error: File {path} is not a file" + return f"Error: File {abs_path} is not a file" content = abs_path.read_text() occurrences = content.count(old_str) if occurrences != 1: return f"Error: Found {occurrences} occurrences of old_str, expected exactly 1" new_content = content.replace(old_str, new_str) - with open(abs_path, "w") as f: - f.write(new_content) + newline = detect_newline(abs_path) + with abs_path.open("w", newline=newline) as fp: + fp.write(new_content) return "Replacement successful" - def __insert(self, insert_line, new_str, path): - abs_path = self.__get_abs_path(path) + def __insert(self, insert_line, new_str, abs_path): if not abs_path.is_file(): - return f"Error: File {path} does not exist or is not a file" + return f"Error: File {abs_path} does not exist or is not a file" lines = abs_path.read_text().splitlines(keepends=True) if insert_line is None or insert_line < 1 or insert_line > len(lines): return f"Error: Invalid insert line {insert_line}" lines.insert(insert_line, new_str + "\n") - abs_path.write_text("".join(lines)) + newline = detect_newline(abs_path) + with abs_path.open("w", newline=newline) as fp: + fp.write("".join(lines)) return "Insert successful" diff --git a/patchwork/common/utils/utils.py b/patchwork/common/utils/utils.py index 766114e6c..4ddf2ef74 100644 --- a/patchwork/common/utils/utils.py +++ b/patchwork/common/utils/utils.py @@ -9,13 +9,31 @@ import tiktoken from chardet.universaldetector import UniversalDetector from git import Head, Repo -from typing_extensions import Any, Callable +from typing_extensions import Any, Callable, Iterable, Counter from patchwork.common.utils.dependency import chromadb from patchwork.logger import logger from patchwork.managed_files import HOME_FOLDER _CLEANUP_FILES: set[Path] = set() +_NEWLINES = {"\n", "\r\n", "\r"} + +def detect_newline(path: str | Path) -> str | None: + with open(path, "r", newline="") as f: + lines = f.read().splitlines(keepends=True) + if len(lines) < 1: + return None + + counter = Counter(_NEWLINES) + for line in lines: + newline_len = 0 + newline = "\n" + for possible_newline in _NEWLINES: + if line.endswith(possible_newline) and len(possible_newline) > newline_len: + newline_len = len(possible_newline) + newline = possible_newline + counter[newline] += 1 + return counter.most_common(1)[0][0] def _cleanup_files(): diff --git a/patchwork/steps/FixIssue/FixIssue.py b/patchwork/steps/FixIssue/FixIssue.py index cb2df70b3..c7a1dc051 100644 --- a/patchwork/steps/FixIssue/FixIssue.py +++ b/patchwork/steps/FixIssue/FixIssue.py @@ -20,19 +20,21 @@ class _ResolveIssue(AnalyzeImplementStrategy): def __init__(self, repo_path: str, llm_client: LlmClient, issue_description: Any, **kwargs): - self.tool_set = Tool.get_tools(path=repo_path) + path = Path(repo_path).resolve() + self.tool_set = Tool.get_tools(path=path) super().__init__( llm_client=llm_client, initial_template_data=dict(issue=issue_description), - analysis_prompt_template=""" -. + analysis_prompt_template=f"""\ + +{path} -I've uploaded a code repository in the current working directory (not in /tmp/inputs). +I've uploaded a code repository in the current working directory. Consider the following issue: -{{issue}} +{{{{issue}}}} Let's first explore and analyze the repository to understand where the issue is located. @@ -49,15 +51,16 @@ def __init__(self, repo_path: str, llm_client: LlmClient, issue_description: Any The error reproduction script and its output Description of the specific changes needed """, - implementation_prompt_template=""" -. + implementation_prompt_template=f"""\ + +{path} I've uploaded a code repository in the current working directory (not in /tmp/inputs). Based on our previous analysis: -{{analysis_results}} +{{{{analysis_results}}}} Let's implement the necessary changes: diff --git a/pyproject.toml b/pyproject.toml index 740a88437..d72165e45 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.81" +version = "0.0.82" description = "" authors = ["patched.codes"] license = "AGPL" From c9b02b065780cb9f4b6c16a2d86a2a328ffd0fc5 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Wed, 11 Dec 2024 10:08:00 +0800 Subject: [PATCH 07/22] Upgrade sigstore action (#1086) * upgrade sigstore action * less aggressive tests * minimize tests --- .github/workflows/release.yml | 2 +- .github/workflows/test.yml | 13 +++++++++++++ 2 files changed, 14 insertions(+), 1 deletion(-) diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index dae96e3d5..f0a5e52a4 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -73,7 +73,7 @@ jobs: path: dist/ - name: Sign the dists with Sigstore - uses: sigstore/gh-action-sigstore-python@v2.1.1 + uses: sigstore/gh-action-sigstore-python@v3 with: inputs: >- ./dist/*.tar.gz diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 2acfb8d6a..40085b580 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -1,6 +1,10 @@ name: Tests on: + pull_request: + types: + - ready_for_review + - review_requested push: branches-ignore: - main @@ -9,8 +13,17 @@ on: - generatereadme-* - generatedocstring-* - generateunittests-* + - resolveissue-* - demo* +# Credits to https://blog.maximeheckel.com/posts/building-perfect-github-action-frontend-teams/ +concurrency: + # Here the group is defined by the head_ref of the PR + group: ${{ github.head_ref }} + # Here we specify that we'll cancel any "in progress" workflow of the same group. Thus if we push, ammend a commit and push + # again the previous workflow will be cancelled, thus saving us github action build minutes and avoid any conflicts + cancel-in-progress: true + jobs: all-test: runs-on: ubuntu-latest From b693b2898d66bda98de6c1837c3c56cdf6f54ad1 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Fri, 13 Dec 2024 14:35:00 +0800 Subject: [PATCH 08/22] fix view tool (#1092) --- patchwork/common/tools/code_edit_tools.py | 25 +++++++++++++++-------- pyproject.toml | 2 +- 2 files changed, 17 insertions(+), 10 deletions(-) diff --git a/patchwork/common/tools/code_edit_tools.py b/patchwork/common/tools/code_edit_tools.py index 387226c9d..841137c10 100644 --- a/patchwork/common/tools/code_edit_tools.py +++ b/patchwork/common/tools/code_edit_tools.py @@ -133,15 +133,22 @@ def __view(self, abs_path: Path, view_range): content = "\n".join(lines[start - 1 : end]) return content elif abs_path.is_dir(): - result = [] - for root, dirs, files in os.walk(abs_path): - level = root[len(str(abs_path)) :].count(os.sep) - if level <= 2: - for d in dirs: - result.append(d) - for f in files: - result.append(f) - return "\n".join(result) + directories = [] + files = [] + for file in abs_path.iterdir(): + directories.append(file.name) if file.is_dir() else files.append(file.name) + + rv = "" + if len(directories) > 0: + rv += "Directories: \n" + rv += '\n'.join(directories) + rv += "\n" + + if len(files) > 0: + rv += "Files: \n" + rv += '\n'.join(files) + + return rv def __create(self, file_text, abs_path): if abs_path.exists(): diff --git a/pyproject.toml b/pyproject.toml index d72165e45..1d324135d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.82" +version = "0.0.83" description = "" authors = ["patched.codes"] license = "AGPL" From 16d47d3f1933c1822884e2d3770e9c463245fdb6 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Fri, 13 Dec 2024 15:59:04 +0800 Subject: [PATCH 09/22] Fix tool records giving path relative to base path. (#1098) * Make modified files be always relative to current working directory instead of base path * Support push triggers in pr --- .github/workflows/test.yml | 4 ++-- patchwork/common/tools/code_edit_tools.py | 4 ++-- patchwork/steps/FixIssue/FixIssue.py | 4 +++- 3 files changed, 7 insertions(+), 5 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 40085b580..fa4364fe3 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -16,10 +16,10 @@ on: - resolveissue-* - demo* -# Credits to https://blog.maximeheckel.com/posts/building-perfect-github-action-frontend-teams/ +# Credits to https://blog.maximeheckel.com/posts/building-perfect-github-action-frontend-teams/#you-are-terminated concurrency: # Here the group is defined by the head_ref of the PR - group: ${{ github.head_ref }} + group: ${{ github.head_ref || github.ref_name }} # Here we specify that we'll cancel any "in progress" workflow of the same group. Thus if we push, ammend a commit and push # again the previous workflow will be cancelled, thus saving us github action build minutes and avoid any conflicts cancel-in-progress: true diff --git a/patchwork/common/tools/code_edit_tools.py b/patchwork/common/tools/code_edit_tools.py index 841137c10..158de4dc2 100644 --- a/patchwork/common/tools/code_edit_tools.py +++ b/patchwork/common/tools/code_edit_tools.py @@ -104,13 +104,13 @@ def execute( return f"Error: {str(e)}" if command in {"create", "str_replace", "insert"}: - self.modified_files.update({abs_path.relative_to(self.repo_path)}) + self.modified_files.update({abs_path}) return result @property def tool_records(self): - return dict(modified_files=[{"path": str(file)} for file in self.modified_files]) + return dict(modified_files=[file for file in self.modified_files]) def __get_abs_path(self, path: str): wanted_path = Path(path).resolve() diff --git a/patchwork/steps/FixIssue/FixIssue.py b/patchwork/steps/FixIssue/FixIssue.py index c7a1dc051..edf8f3a15 100644 --- a/patchwork/steps/FixIssue/FixIssue.py +++ b/patchwork/steps/FixIssue/FixIssue.py @@ -126,5 +126,7 @@ def run(self): self.multiturn_llm_call.execute(limit=100) for tool in self.multiturn_llm_call.tool_set.values(): if isinstance(tool, CodeEditTool): - return tool.tool_records + cwd = Path.cwd() + modified_files = [file_path.relative_to(cwd) for file_path in tool.tool_records["modified_files"]] + return dict(modified_files=[{"path": str(file)} for file in modified_files]) return dict() From 7765aaeac8c9589d2b79e7dd68d1211bab4a4eac Mon Sep 17 00:00:00 2001 From: jonahdc Date: Thu, 19 Dec 2024 11:37:15 +0800 Subject: [PATCH 10/22] Add new step for SonarQube results (#1104) * add ScanSonar step * add tests * use optional * add azure devops for pr creation * fix ScanSonar to get code contexts as well * fix tests * fix again * save * update init * bump version * bump and record outputs * update * Update patched.py * bump to 0.0.84 * fix error message --------- Co-authored-by: TIANYOU CHEN <42710806+CTY-git@users.noreply.github.com> --- .github/workflows/release.yml | 2 +- patchwork/app.py | 5 +- patchwork/common/client/patched.py | 36 +- patchwork/common/client/scm.py | 196 +++- patchwork/common/client/sonar.py | 149 ++++ patchwork/patchflow.py | 28 + patchwork/patchflows/SonarFix/SonarFix.py | 104 +++ .../patchflows/SonarFix/default_prompt.json | 9 + patchwork/patchflows/SonarFix/defaults.yml | 33 + patchwork/patchflows/__init__.py | 2 + patchwork/steps/CreatePR/CreatePR.py | 8 +- patchwork/steps/CreatePR/typed.py | 1 + patchwork/steps/ExtractCode/ExtractCode.py | 70 +- patchwork/steps/ScanSonar/README.md | 23 + patchwork/steps/ScanSonar/ScanSonar.py | 52 ++ patchwork/steps/ScanSonar/__init__.py | 4 + patchwork/steps/ScanSonar/typed.py | 43 + patchwork/steps/__init__.py | 2 + poetry.lock | 834 +++++++++--------- pyproject.toml | 3 +- tests/common/test_app.py | 4 +- tests/steps/test_ReadIssues.py | 14 +- tests/steps/test_ScanSonar.py | 53 ++ 23 files changed, 1201 insertions(+), 474 deletions(-) create mode 100644 patchwork/common/client/sonar.py create mode 100644 patchwork/patchflow.py create mode 100644 patchwork/patchflows/SonarFix/SonarFix.py create mode 100644 patchwork/patchflows/SonarFix/default_prompt.json create mode 100644 patchwork/patchflows/SonarFix/defaults.yml create mode 100644 patchwork/steps/ScanSonar/README.md create mode 100644 patchwork/steps/ScanSonar/ScanSonar.py create mode 100644 patchwork/steps/ScanSonar/__init__.py create mode 100644 patchwork/steps/ScanSonar/typed.py create mode 100644 tests/steps/test_ScanSonar.py diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index f0a5e52a4..858838886 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -73,7 +73,7 @@ jobs: path: dist/ - name: Sign the dists with Sigstore - uses: sigstore/gh-action-sigstore-python@v3 + uses: sigstore/gh-action-sigstore-python@v3.0.0 with: inputs: >- ./dist/*.tar.gz diff --git a/patchwork/app.py b/patchwork/app.py index 3de6ac301..c759ec238 100644 --- a/patchwork/app.py +++ b/patchwork/app.py @@ -238,9 +238,10 @@ def cli( if not disable_telemetry: patched.send_public_telemetry(patchflow_name, inputs) - with patched.patched_telemetry(patchflow_name, {}): + with patched.patched_telemetry(patchflow_name, {}) as output_dict: patchflow_instance = patchflow_class(inputs) - patchflow_instance.run() + patchflow_output = patchflow_instance.run() + output_dict.update(patchflow_output) except Exception as e: logger.debug(traceback.format_exc()) logger.error(f"Error running patchflow {patchflow}: {e}") diff --git a/patchwork/common/client/patched.py b/patchwork/common/client/patched.py index ddd5d81e2..b06d769b2 100644 --- a/patchwork/common/client/patched.py +++ b/patchwork/common/client/patched.py @@ -76,6 +76,10 @@ class PatchedClient(click.ParamType): ALLOWED_TELEMETRY_KEYS = { "model", } + ALLOWED_TELEMETRY_OUTPUT_KEYS = { + "pr_url", + "issue_url", + } def __init__(self, access_token: str, url: str = DEFAULT_PATCH_URL): self.access_token = access_token @@ -140,6 +144,15 @@ def __handle_telemetry_inputs(self, inputs: dict[str, Any]) -> dict: return inputs_copy + def __handle_telemetry_outputs(self, outputs: dict[str, Any]) -> dict: + diff_keys = set(outputs.keys()).difference(self.ALLOWED_TELEMETRY_OUTPUT_KEYS) + + outputs_copy = outputs.copy() + for key in diff_keys: + del outputs_copy[key] + + return outputs_copy + async def _public_telemetry(self, patchflow: str, inputs: dict[str, Any]): user_config = get_user_config() requests.post( @@ -169,19 +182,21 @@ def send_public_telemetry(self, patchflow: str, inputs: dict): @contextlib.contextmanager def patched_telemetry(self, patchflow: str, inputs: dict): + outputs = dict() + if not self.access_token: - yield + yield outputs return try: is_valid_client = self.test_token() except Exception as e: logger.error(f"Access Token test failed: {e}") - yield + yield outputs return if not is_valid_client: - yield + yield outputs return try: @@ -189,18 +204,20 @@ def patched_telemetry(self, patchflow: str, inputs: dict): patchflow_run_id = self.record_patchflow_run(patchflow, repo, self.__handle_telemetry_inputs(inputs)) except Exception as e: logger.error(f"Failed to record patchflow run: {e}") - yield + yield outputs return if patchflow_run_id is None: - yield + yield outputs return try: - yield + yield outputs finally: try: - self.finish_record_patchflow_run(patchflow_run_id, patchflow, repo) + self.finish_record_patchflow_run( + patchflow_run_id, patchflow, repo, self.__handle_telemetry_outputs(outputs) + ) except Exception as e: logger.error(f"Failed to finish patchflow run: {e}") @@ -222,9 +239,9 @@ def record_patchflow_run(self, patchflow: str, repo: Repo, inputs: dict) -> int return None logger.debug(f"Patchflow run recorded for {patchflow}") - return response.json()["id"] + return response.json().get("id") - def finish_record_patchflow_run(self, id: int, patchflow: str, repo: Repo) -> None: + def finish_record_patchflow_run(self, id: int, patchflow: str, repo: Repo, outputs: dict) -> None: response = self._post( url=self.url + "/v1/patchwork/", headers={"Authorization": f"Bearer {self.access_token}"}, @@ -232,6 +249,7 @@ def finish_record_patchflow_run(self, id: int, patchflow: str, repo: Repo) -> No "id": id, "url": repo.remotes.origin.url, "patchflow": patchflow, + "outputs": outputs }, ) diff --git a/patchwork/common/client/scm.py b/patchwork/common/client/scm.py index cf0f33381..22704f9a4 100644 --- a/patchwork/common/client/scm.py +++ b/patchwork/common/client/scm.py @@ -6,14 +6,23 @@ import time from enum import Enum from itertools import chain +from pathlib import Path +from urllib.parse import urlparse +import git import gitlab.const from attrs import define +from azure.devops.connection import Connection +from azure.devops.released.client_factory import ClientFactory +from azure.devops.released.core.core_client import CoreClient +from azure.devops.released.git.git_client import GitClient +from azure.devops.v7_1.git.models import GitPullRequest, GitPullRequestSearchCriteria, TeamProjectReference, GitRepository from github import Auth, Consts, Github, GithubException, PullRequest from github.GithubException import UnknownObjectException from gitlab import Gitlab, GitlabAuthenticationError, GitlabError from gitlab.v4.objects import ProjectMergeRequest from giturlparse import GitUrlParsed, parse +from msrest.authentication import BasicAuthentication from typing_extensions import Protocol, TypedDict from patchwork.logger import logger @@ -53,12 +62,13 @@ class PullRequestTexts(TypedDict): class PullRequestState(Enum): - OPEN = (["open"], ["opened"]) - CLOSED = (["closed"], ["closed", "merged"]) + OPEN = (["open"], ["opened"], ["active"]) + CLOSED = (["closed"], ["closed", "merged"], ["completed", "abandoned", "notSet"]) - def __init__(self, github_state: list[str], gitlab_state: list[str]): + def __init__(self, github_state: list[str], gitlab_state: list[str], azure_devops_state: list[str]): self.github_state: list[str] = github_state self.gitlab_state: list[str] = gitlab_state + self.azure_devops_state: list[str] = azure_devops_state _COMMENT_MARKER = "" @@ -112,6 +122,11 @@ def _apply_pr_template(pr: "PullRequestProtocol", body: str) -> str: # chunk_link_format = file_link_format + "_{start_line}_{end_line}" chunk_link_format = file_link_format + "" anchor_hash = hashlib.sha1 + elif isinstance(pr, AzureDevopsPullRequest): + backup_link_format = "{url}?_a=files" + file_link_format = backup_link_format + "&path=/{path}" + chunk_link_format = file_link_format + "" + anchor_hash = hashlib.md5 else: return pr.url() @@ -135,7 +150,7 @@ def _apply_pr_template(pr: "PullRequestProtocol", body: str) -> str: format_to_use = chunk_link_format replacement_value = format_to_use.format( - url=pr.url(), diff_anchor=diff_anchor, start_line=start, end_line=end + url=pr.url(), path=path, diff_anchor=diff_anchor, start_line=start, end_line=end ) template = template[:start_idx] + replacement_value + template[end_idx + 2 :] start_idx, end_idx = PullRequestProtocol._get_template_indexes(template) @@ -352,6 +367,37 @@ def texts(self) -> PullRequestTexts: diffs={file.filename: file.patch for file in self._pr.get_files() if file.patch is not None}, ) +class AzureDevopsPullRequest(PullRequestProtocol): + def __init__(self, pr: GitPullRequest, git_client: GitClient, pr_base_url: str): + self._pr: GitPullRequest = pr + self.git_client: GitClient = git_client + self.pr_base_url = pr_base_url + + @property + def id(self) -> int: + return self._pr.pull_request_id + + def url(self) -> str: + final_pr_url = self.pr_base_url + if not final_pr_url.endswith("/"): + final_pr_url += "/" + return final_pr_url + str(self.id) + + def set_pr_description(self, body: str) -> None: + final_body = PullRequestProtocol._apply_pr_template(self, body) + body = GitPullRequest(description=final_body) + self.git_client.update_pull_request(body, repository_id=self._pr.repository.id, pull_request_id=self._pr.pull_request_id, project=self._pr.repository.project.id) + + def create_comment( + self, body: str, path: str | None = None, start_line: int | None = None, end_line: int | None = None + ) -> str | None: + ... + + def reset_comments(self) -> None: + ... + + def texts(self) -> PullRequestTexts: + ... class GithubClient(ScmPlatformClientProtocol): DEFAULT_URL = Consts.DEFAULT_BASE_URL @@ -608,3 +654,145 @@ def create_issue_comment( obj = self.gitlab.projects.get(slug).issues.create({"title": title, "description": issue_text}) return obj["web_url"] + + +class AzureDevopsClient(ScmPlatformClientProtocol): + DEFAULT_URL = "https://dev.azure.com/" + + def __init__(self, access_token: str, url: str = DEFAULT_URL, remote: str = "origin"): + self.credentials = BasicAuthentication('', access_token) + self.__url = url + self.__remote = remote + git_repo = git.Repo(Path.cwd(), search_parent_directories=True) + original_remote_url = git_repo.remotes[remote].url + parsed_repo: GitUrlParsed = parse(original_remote_url) + self.__org_name = parsed_repo.owner + self.__project_name = parsed_repo.groups_path.replace("/_git", "") + self.__repo_name = parsed_repo.repo + + def __pr_resource_html_url(self): + url = self.__url + if not url.endswith("/"): + url += "/" + return f"{url}{self.__org_name}/{self.__project_name}/_git/{self.__repo_name}/pullrequest/" + + + @functools.cached_property + def clients(self) -> ClientFactory: + url = self.__url + if not url.endswith("/"): + url += "/" + + conn = Connection(base_url=f"{url}{self.__org_name}", creds=self.credentials) + return conn.clients + + @functools.cached_property + def git_client(self) -> GitClient: + return self.clients.get_git_client() + + @functools.cached_property + def core_client(self) -> CoreClient: + return self.clients.get_core_client() + + @functools.cached_property + def project(self) -> TeamProjectReference: + projs = self.core_client.get_projects() + proj = next((proj for proj in projs if proj.name == self.__project_name), None) + if proj is None: + raise ValueError(f"Unable to determine project name from remote {self.__remote} url. Parsed project name: {self.__project_name}") + return proj + + @functools.cached_property + def repo(self) -> GitRepository: + repos = self.git_client.get_repositories(project=self.project.id) + git_repo = next((r for r in repos if r.name == self.__repo_name), None) + if git_repo is None: + raise ValueError(f"Unable to determine repository name from remote {self.__remote} url. Parsed repository name: {self.__repo_name}") + return git_repo + + def set_url(self, url: str) -> None: + self.__url = url + + def test(self) -> bool: + response = self.core_client.get_projects() + return next(iter(response), None) is not None + + def get_slug_and_id_from_url(self, url: str) -> tuple[str, int] | None: + ... + + def find_issue_by_url(self, url: str) -> IssueText | None: + ... + + def find_issue_by_id(self, slug: str, issue_id: int) -> IssueText | None: + ... + + def get_pr_by_url(self, url: str) -> PullRequestProtocol | None: + ... + + def find_pr_by_id(self, slug: str, pr_id: int) -> PullRequestProtocol | None: + ... + + def find_prs( + self, + slug: str, + state: PullRequestState | None = None, + original_branch: str | None = None, + feature_branch: str | None = None, + limit: int | None = None, + ) -> list[PullRequestProtocol]: + kwargs_list = dict(status=[None], target_ref_name=[None], source_ref_name=[None]) + + if state is not None: + kwargs_list["status"] = state.gitlab_state # type: ignore + if original_branch is not None: + kwargs_list["target_ref_name"] = [f"refs/heads/{original_branch}"] # type: ignore + if feature_branch is not None: + kwargs_list["source_ref_name"] = [f"refs/heads/{feature_branch}"] # type: ignore + + page_list = [] + keys = kwargs_list.keys() + for instance in itertools.product(*kwargs_list.values()): + kwargs = dict(((key, value) for key, value in zip(keys, instance) if value is not None)) + git_pr_search = GitPullRequestSearchCriteria( + repository_id=self.repo.id, + **kwargs, + ) + pr_instances = self.git_client.get_pull_requests( + project=self.project.id, + repository_id=self.repo.id, + search_criteria=git_pr_search + ) + page_list.append(pr_instances) + + rv_list = [] + for mr in itertools.islice(itertools.chain(*page_list), limit): + rv_list.append(AzureDevopsPullRequest(mr, self.git_client, self.__pr_resource_html_url())) + + return rv_list + + def create_pr( + self, + slug: str, + title: str, + body: str, + original_branch: str, + feature_branch: str, + ) -> PullRequestProtocol: + # before creating a PR, check if one already exists + pr_body = GitPullRequest( + source_ref_name=f"refs/heads/{feature_branch}", + target_ref_name=f"refs/heads/{original_branch}", + title=title, + description=body, + # should be web tag definition + # labels="patchwork", + ) + pr_instance = self.git_client.create_pull_request(pr_body, repository_id=self.repo.id, project=self.project.id) + mr = AzureDevopsPullRequest(pr_instance, self.git_client, self.__pr_resource_html_url()) # type: ignore + return mr + + def create_issue_comment( + self, slug: str, issue_text: str, title: str | None = None, issue_id: int | None = None + ) -> str: + ... + diff --git a/patchwork/common/client/sonar.py b/patchwork/common/client/sonar.py new file mode 100644 index 000000000..dc059fa4e --- /dev/null +++ b/patchwork/common/client/sonar.py @@ -0,0 +1,149 @@ +from collections import defaultdict +from typing import Optional, Union + +import requests +from dataclasses import dataclass + +@dataclass +class SonarVuln: + cwe: str + bug_msg: str + start: int + end: int + + +class SonarClient: + __sonar_url = "https://sonarcloud.io/api/" + __issue_path = "issues/search" + __hotspot_path = "hotspots/search" + __hotspot_details_path = "hotspots/show" + + def __init__(self, access_token: str, url: str = __sonar_url) -> None: + self._access_token = access_token + self._url = url + + def find_vulns(self, project_key: str) -> dict[str, list[SonarVuln]]: + rv = defaultdict(list) + hotspots = self._find_hotspots(project_key) + for hotspot in hotspots: + hotspot_details = self._find_hotspot_details(hotspot["key"]) + if hotspot_details is None: + continue + + path = hotspot_details["component"]["path"] + + vuln = SonarVuln( + cwe=hotspot_details["rule"]["name"], + bug_msg=hotspot_details["rule"]["riskDescription"], + start=hotspot_details["textRange"]["startLine"], + end=hotspot_details["textRange"]["endLine"], + ) + + rv[path].append(vuln) + + issues = self.find_issues(project_key) + for path, vuln in issues: + rv[path].append(vuln) + + return rv + + def _find_hotspot_details(self, hotspot_key: str) -> Optional[dict]: + headers = {"Authorization": f"Bearer {self._access_token}"} + # Define the parameters for Hotspot API request + params: dict[str, str | int] = {"hotspot": hotspot_key} + url = self._url + self.__hotspot_details_path + response = requests.get(url, params=params, headers=headers) + if not response.ok: + print("Something went wrong with sonar hotspot details API:", response.text) + return None + + return response.json() + + def _find_hotspots(self, project_key: str): + page = 1 + page_size = 50 + + headers = {"Authorization": f"Bearer {self._access_token}"} + # Define the parameters for Hotspot API request + params: dict[str, Union[str, int]] = {"p": page, "ps": page_size, "projectKey": project_key, "status": "TO_REVIEW"} + + url = self._url + self.__hotspot_path + + is_done = False + while not is_done: + response = requests.get(url, params=params, headers=headers) + if not response.ok: + print("Something went wrong with hotspot API:", response.text) + return + + data = response.json() + hotspots = data["hotspots"] + + is_done = len(hotspots) < page_size + params["p"] = int(params["p"]) + 1 + + for hotspot in hotspots: + yield hotspot + + def find_issues(self, project_key: str): + page = 1 + page_size = 50 + + headers = {"Authorization": f"Bearer {self._access_token}"} + + params: dict[str, str | int] = { + "p": page, + "ps": page_size, + "projects": project_key, + # "status": "VULNERABILITY", + # "impactSoftwareQualities": "SECURITY", + "additionalFields": "rules", + } + + url = self._url + self.__issue_path + + is_done = False + while not is_done: + # Send the API request for sonar results + response = requests.get(url, params=params, headers=headers) + if not response.ok: + print("Something went wrong with sonar issues API") + return + + data = response.json() + is_done = len(data["issues"]) < page_size + params["p"] = int(params["p"]) + 1 + + # maps to prefix of issue.project + component_by_key = { + component["key"]: component + for component in data["components"] + if component["qualifier"] == "FIL" and "path" in component.keys() + } + # maps to issue.rule + rule_by_key = {rule["key"]: rule for rule in data["rules"]} + + for issue in data["issues"]: + issue_component_key = next( + (key for key in component_by_key.keys() if key.startswith(issue["component"])), + None, + ) + rule = rule_by_key.get(issue["rule"], None) + if issue_component_key is None or rule is None: + continue + + if "impacts" not in issue.keys(): + continue + + impact = next(iter(issue["impacts"]), None) + if impact is None: + continue + + path = component_by_key[issue_component_key]["path"] + vuln = SonarVuln( + cwe="", + bug_msg=issue["message"], + start=issue["textRange"]["startLine"], + end=issue["textRange"]["endLine"], + ) + yield path, vuln \ No newline at end of file diff --git a/patchwork/patchflow.py b/patchwork/patchflow.py new file mode 100644 index 000000000..27c53ceb9 --- /dev/null +++ b/patchwork/patchflow.py @@ -0,0 +1,28 @@ +import abc +from typing import Type + +import click + +_internal_map: dict[str, Type["Patchflow"]] + + +class PatchflowCommands(click.MultiCommand): + def list_commands(self, ctx): + return sorted(list(_internal_map.keys())) + + def get_command(self, ctx, name): + return _internal_map.get(name, None) + + +class Patchflow(abc.ABC, click.MultiCommand): + def __init_subclass__(cls, patchflow_name=None, steps=None, **kwargs): + name = patchflow_name or cls.__name__ + _internal_map[name] = cls + + @abc.abstractmethod + def run(self) -> dict: + """ + Runs the step. + :return: a dictionary of outputs + """ + ... diff --git a/patchwork/patchflows/SonarFix/SonarFix.py b/patchwork/patchflows/SonarFix/SonarFix.py new file mode 100644 index 000000000..a3edce3c6 --- /dev/null +++ b/patchwork/patchflows/SonarFix/SonarFix.py @@ -0,0 +1,104 @@ +import json +from enum import IntEnum +from pathlib import Path + +import yaml + +from patchwork.common.utils.progress_bar import PatchflowProgressBar +from patchwork.common.utils.step_typing import validate_steps_with_inputs +from patchwork.logger import logger +from patchwork.step import Step +from patchwork.steps import ( + LLM, + PR, + CallLLM, + CommitChanges, + CreatePR, + ExtractCode, + ExtractModelResponse, + ModifyCode, + PreparePR, + PreparePrompt, + ScanSemgrep, ScanSonar, +) + +_DEFAULT_PROMPT_JSON = Path(__file__).parent / "default_prompt.json" +_DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" + + +class Compatibility(IntEnum): + HIGH = 3 + MEDIUM = 2 + LOW = 1 + UNKNOWN = 0 + + @staticmethod + def from_str(value: str) -> "Compatibility": + try: + return Compatibility[value.upper()] + except KeyError: + logger.error(f"Invalid compatibility value: {value}") + return Compatibility.UNKNOWN + + +class SonarFix(Step): + def __init__(self, inputs: dict): + PatchflowProgressBar(self).register_steps( + CallLLM, + CommitChanges, + CreatePR, + ExtractCode, + ExtractModelResponse, + ModifyCode, + PreparePR, + PreparePrompt, + ScanSonar, + ) + final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) + final_inputs.update(inputs) + + self.compatibility_threshold = Compatibility.from_str(final_inputs["compatibility"]) + + if "prompt_id" not in final_inputs.keys(): + final_inputs["prompt_id"] = "fixprompt" + + if "prompt_template_file" not in final_inputs.keys(): + final_inputs["prompt_template_file"] = _DEFAULT_PROMPT_JSON + + final_inputs["response_partitions"] = { + "commit_message": ["A. Commit message:", "B. Change summary:"], + "patch_message": ["B. Change summary:", "C. Compatibility Risk:"], + "compatibility": ["C. Compatibility Risk:", "D. Fixed Code:"], + "patch": ["D. Fixed Code:", "```", "\n", "```"], + } + final_inputs["pr_title"] = f"PatchWork {self.__class__.__name__}" + final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" + + validate_steps_with_inputs( + set(final_inputs.keys()).union({"prompt_values"}), ScanSemgrep, ExtractCode, LLM, ModifyCode, PR + ) + + self.inputs = final_inputs + + def run(self) -> dict: + outputs = ScanSonar(self.inputs).run() + self.inputs.update(outputs) + + self.inputs["prompt_values"] = outputs.get("files_to_patch", []) + outputs = LLM(self.inputs).run() + self.inputs.update(outputs) + + for extracted_response in self.inputs["extracted_responses"]: + response_compatibility = Compatibility.from_str( + extracted_response.get("compatibility", "UNKNOWN").strip() + ) + if response_compatibility < self.compatibility_threshold: + extracted_response.pop("patch", None) + + outputs = ModifyCode(self.inputs).run() + self.inputs.update(outputs) + + outputs = PR(self.inputs).run() + self.inputs.update(outputs) + + return self.inputs diff --git a/patchwork/patchflows/SonarFix/default_prompt.json b/patchwork/patchflows/SonarFix/default_prompt.json new file mode 100644 index 000000000..0b5027948 --- /dev/null +++ b/patchwork/patchflows/SonarFix/default_prompt.json @@ -0,0 +1,9 @@ +[ + { + "id": "fixprompt", + "prompts": [ + {"role": "system", "content": "You are a senior software engineer who is best in the world at fixing vulnerabilities. Users will give you vulnerable code and you will generate a fix based on the provided INSTRUCTION.\n\nINSTRUCTION:\n\nOnly respond with the fixed code, do not add any comments or change the indentation.\n\nMake sure you respond with the full code and not only the parts that are changed.\n\nThe code should have no errors, it should compile and user should be able to use the fixed code as a direct replacement of the vulnerable code. The code should not introduce any new dependencies or use API calls that are not present in the code.\n\nBefore you generate a fix, do a vulnerability triage and analyse if the vulnerability can indeed to be exploited in the given code.\n\nIf the vulnerability cannot be exploited, respond with .\n\nelse, If you cannot generate an exact fix for the vulnerability, respond with .\n\nelse, If you can generate a fix for the vulnerability, do a brief change impact analysis to assess how these modifications might affect the overall system, considering both immediate and potential long-term compatibility issues.\n\nLow: Code diff will be applied to the code base and automatically merged without review.\n\nMedium: Code diff will be applied and a pull request will be sent to the developer to merge, but there are no indirect changes expected to be done in other parts of the system.\n\nHigh: Code diff will be offered as a suggestion to the developer to review and then apply to the code base. There are likely other changes that need to be done by the developer before the change can be implemented.\n\nPlease provide a response only in the following format:\n\nA. Commit message:\n\n\nB. Change summary:\n\n\nC. Compatibility Risk:\n \n\nD. Fixed Code:\n\n\nFix vulnerability with the following details.\n\n{{messageText}}."}, + {"role": "user", "content": "```\n{{affectedCode}}\n```"} + ] + } +] \ No newline at end of file diff --git a/patchwork/patchflows/SonarFix/defaults.yml b/patchwork/patchflows/SonarFix/defaults.yml new file mode 100644 index 000000000..991b32155 --- /dev/null +++ b/patchwork/patchflows/SonarFix/defaults.yml @@ -0,0 +1,33 @@ +# AutoFix Inputs +compatibility: unknown + +# ExtractCode Inputs +vulnerability_limit: 10 +context_size: 1000 +severity: unknown +# sarif_file_path should point to the generated SARIF file relative to the working directory +# sarif_file_path: /mnt/data/sarif.json + +# PreparePrompt Inputs +# prompt_template_file: your-prompt-template-here + +# CallLLM Inputs +# openai_api_key: required-for-chatgpt +# google_api_key: required-for-gemini +# model: gpt-4o +# client_base_url: https://api.openai.com/v1 +# Example HF model +# client_base_url: https://api-inference.huggingface.co/models/codellama/CodeLlama-70b-Instruct-hf/v1 +# model: codellama/CodeLlama-70b-Instruct-hf +# model_temperature: 0.2 +# model_top_p: 0.95 +# model_max_tokens: 2000 + +# CommitChanges Inputs +disable_branch: false + +# CreatePR Inputs +disable_pr: false +force_pr_creation: true +# github_api_key: required-for-github-scm +# gitlab_api_key: required-for-gitlab-scm \ No newline at end of file diff --git a/patchwork/patchflows/__init__.py b/patchwork/patchflows/__init__.py index 3345dfec5..277f03197 100644 --- a/patchwork/patchflows/__init__.py +++ b/patchwork/patchflows/__init__.py @@ -6,6 +6,7 @@ from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests from .PRReview.PRReview import PRReview from .ResolveIssue.ResolveIssue import ResolveIssue +from .SonarFix.SonarFix import SonarFix __all__ = [ "AutoFix", @@ -16,4 +17,5 @@ "GenerateDocstring", "GenerateUnitTests", "GenerateDiagram", + "SonarFix", ] diff --git a/patchwork/steps/CreatePR/CreatePR.py b/patchwork/steps/CreatePR/CreatePR.py index be8a92692..ba2be895e 100644 --- a/patchwork/steps/CreatePR/CreatePR.py +++ b/patchwork/steps/CreatePR/CreatePR.py @@ -7,7 +7,7 @@ GithubClient, GitlabClient, ScmPlatformClientProtocol, - get_slug_from_remote_url, + get_slug_from_remote_url, AzureDevopsClient, ) from patchwork.logger import logger from patchwork.step import Step, StepStatus @@ -30,10 +30,12 @@ def __init__(self, inputs: dict): self.scm_client = GithubClient(inputs["github_api_key"]) elif "gitlab_api_key" in inputs.keys(): self.scm_client = GitlabClient(inputs["gitlab_api_key"]) + elif "azuredevops_api_key" in inputs.keys(): + self.scm_client = AzureDevopsClient(inputs["azuredevops_api_key"]) else: logger.warning( - f'Missing required input data: "github_api_key" or "gitlab_api_key",' - f" PR creation will be disabled." + f'Missing required input data: "github_api_key", "gitlab_api_key" or "azuredevops_api_key". ' + f"PR creation will be disabled." ) self.enabled = False diff --git a/patchwork/steps/CreatePR/typed.py b/patchwork/steps/CreatePR/typed.py index abb1249cf..9bd7e4401 100644 --- a/patchwork/steps/CreatePR/typed.py +++ b/patchwork/steps/CreatePR/typed.py @@ -16,6 +16,7 @@ class CreatePRInputs(__CreatePRRequiredInputs, total=False): scm_url: Annotated[str, StepTypeConfig(is_config=True)] gitlab_api_key: Annotated[str, StepTypeConfig(is_config=True)] github_api_key: Annotated[str, StepTypeConfig(is_config=True)] + azuredevops_api_key: Annotated[str, StepTypeConfig(is_config=True)] class CreatePROutputs(TypedDict): diff --git a/patchwork/steps/ExtractCode/ExtractCode.py b/patchwork/steps/ExtractCode/ExtractCode.py index 01d1e31a6..6a03252e3 100644 --- a/patchwork/steps/ExtractCode/ExtractCode.py +++ b/patchwork/steps/ExtractCode/ExtractCode.py @@ -4,6 +4,7 @@ import sys from collections import defaultdict from enum import IntEnum +from logging import LogRecord from pathlib import Path from urllib.parse import urlparse @@ -38,6 +39,42 @@ def get_source_code_context( return None, None +def read_and_get_source_code_context(file_path: str, start_line: int, end_line: int, context_length: int): + # Extract lines from the code file + logger.debug(f"Extracting context for {file_path} at {start_line}:{end_line}") + try: + with open_with_chardet(file_path, "r") as file: + src = file.read() + + source_lines = src.splitlines(keepends=True) + context_start, context_end = get_source_code_context( + file_path, source_lines, start_line, end_line, context_length + ) + + source_code_context = None + if context_start is not None and context_end is not None: + source_code_context = "".join(source_lines[context_start:context_end]) + + except FileNotFoundError: + context_start = None + context_end = None + source_code_context = None + logger.debug(f"File not found in the current working directory: {file_path}") + except Exception as e: + context_start = None + context_end = None + source_code_context = None + logger.error(f"Error reading file: {file_path}") + + if source_code_context is None: + logger.debug(f"No context found for {file_path} at {start_line}:{end_line}") + return None + + start = context_start if context_start is not None else start_line + end = context_end if context_end is not None else end_line + return source_code_context, start, end + + def parse_sarif_location(base_path: Path, location_str: str) -> Path | None: uri = urlparse(location_str) if uri.scheme != "file" and uri.scheme != "": @@ -220,35 +257,10 @@ def transform_sarif_results( else: file_path = str(uri) - # Extract lines from the code file - logger.debug(f"Extracting context for {file_path} at {start_line}:{end_line}") - try: - with open_with_chardet(file_path, "r") as file: - src = file.read() - - source_lines = src.splitlines(keepends=True) - context_start, context_end = get_source_code_context( - file_path, source_lines, start_line, end_line, context_length - ) - - source_code_context = None - if context_start is not None and context_end is not None: - source_code_context = "".join(source_lines[context_start:context_end]) - - except FileNotFoundError: - context_start = None - context_end = None - source_code_context = None - logger.debug(f"File not found in the current working directory: {file_path}") - except Exception as e: - context_start = None - context_end = None - source_code_context = None - logger.error(f"Error reading file: {file_path}", e) - - if source_code_context is None: - logger.debug(f"No context found for {file_path} at {start_line}:{end_line}") + data = read_and_get_source_code_context(file_path, start_line, end_line, context_length) + if data is None: continue + source_code_context, start, end = data fix_messages = "" fix_message_delimiter = "\n- " @@ -256,8 +268,6 @@ def transform_sarif_results( fix_msg = fix.get("description", {}).get("text", "") fix_messages = fix_messages + fix_message_delimiter + fix_msg - start = context_start if context_start is not None else start_line - end = context_end if context_end is not None else end_line msg = f"Issue Description: {result.get('message', {}).get('text', '')}" if fix_messages.strip() != "": msg = f"{msg}\n" f"Suggested fixes:{fix_messages}" diff --git a/patchwork/steps/ScanSonar/README.md b/patchwork/steps/ScanSonar/README.md new file mode 100644 index 000000000..fa60a11e6 --- /dev/null +++ b/patchwork/steps/ScanSonar/README.md @@ -0,0 +1,23 @@ +# Code Documentation + +## Input +- This code is part of the Patchwork package and implements the `ScanSonar` step. +- The `ScanSonar` class requires the following inputs in its initialization: + - `sonarqube_project_key` (required): The SonarQube project identifier + - `sonarqube_access_token` (required): Authentication token for SonarQube API access + - `sonarqube_base_url` (required): SonarQube instance URL (e.g., https://sonarcloud.io) + +## Output +- The `ScanSonar` class has a `run` function that collects vulnerability information from SonarQube. +- Returns a dictionary with a `files_to_patch` key containing a list of `SonarVulnerability` objects. +- Each `SonarVulnerability` contains: + - `uri`: File path where the vulnerability was found + - `startLine`: Starting line of the vulnerability + - `endLine`: Ending line of the vulnerability + - `cwe`: Common Weakness Enumeration identifier + - `description`: Detailed description of the vulnerability + +## Dependencies +- Requires the SonarQube API to be accessible +- Uses the internal `SonarClient` for API communication +- Authentication via access token is required diff --git a/patchwork/steps/ScanSonar/ScanSonar.py b/patchwork/steps/ScanSonar/ScanSonar.py new file mode 100644 index 000000000..cdd80df75 --- /dev/null +++ b/patchwork/steps/ScanSonar/ScanSonar.py @@ -0,0 +1,52 @@ +from typing import List + +from patchwork.step import Step, StepStatus +from patchwork.common.client.sonar import SonarClient +from patchwork.steps.ExtractCode.ExtractCode import read_and_get_source_code_context +from patchwork.steps.ScanSonar.typed import ( + ScanSonarInputs, + ScanSonarOutputs, + SonarVulnerability +) + +class ScanSonar(Step, input_class=ScanSonarInputs, output_class=ScanSonarOutputs): + def __init__(self, inputs: dict): + super().__init__(inputs) + + self.context_length = inputs.get("context_length", 1000) + self.project_key = inputs.get("sonarqube_project_key") + access_token = inputs.get("sonarqube_api_key") + sonar_url = inputs.get("sonarqube_base_url") + sonar_client_kwargs = dict(access_token=access_token) + if sonar_url is not None: + sonar_client_kwargs["url"] = sonar_url + self.client = SonarClient(**sonar_client_kwargs) + + def run(self) -> dict: + try: + vulns_by_path = self.client.find_vulns(self.project_key) + + files_to_patch: List[SonarVulnerability] = [] + + for file_path, vulns in vulns_by_path.items(): + for vuln in vulns: + data = read_and_get_source_code_context(file_path, vuln.start, vuln.end, self.context_length) + if data is None: + continue + source_code_context, start, end = data + + vulnerability = SonarVulnerability( + uri=file_path, + startLine=start, + endLine=end, + affectedCode=source_code_context, + messageText=vuln.bug_msg, + ) + files_to_patch.append(vulnerability) + + self.set_status(StepStatus.COMPLETED, "Successfully collected SonarQube results") + return dict(files_to_patch=files_to_patch) + + except Exception as e: + self.set_status(StepStatus.FAILED, f"Failed to collect SonarQube results: {str(e)}") + raise diff --git a/patchwork/steps/ScanSonar/__init__.py b/patchwork/steps/ScanSonar/__init__.py new file mode 100644 index 000000000..70a487aaf --- /dev/null +++ b/patchwork/steps/ScanSonar/__init__.py @@ -0,0 +1,4 @@ +from .ScanSonar import ScanSonar +from .typed import ScanSonarInputs, ScanSonarOutputs, SonarVulnerability + +__all__ = ["ScanSonar", "ScanSonarInputs", "ScanSonarOutputs", "SonarVulnerability"] \ No newline at end of file diff --git a/patchwork/steps/ScanSonar/typed.py b/patchwork/steps/ScanSonar/typed.py new file mode 100644 index 000000000..09a28db70 --- /dev/null +++ b/patchwork/steps/ScanSonar/typed.py @@ -0,0 +1,43 @@ +from typing_extensions import Annotated, TypedDict, List +from patchwork.common.utils.step_typing import StepTypeConfig + +class __ScanSonarRequiredInputs(TypedDict): + sonarqube_api_key: Annotated[ + str, + StepTypeConfig( + is_config=True, + msg="""SonarQube access token not found. +Please generate an access token in your SonarQube instance and add `--sonarqube_api_key=` to the command line.""", + ), + ] + sonarqube_project_key: Annotated[ + str, + StepTypeConfig( + is_config=True, + msg="""SonarQube project key not found. +Please provide your project key using `--sonarqube_project_key=`. +You can find this in your SonarQube project settings.""", + ), + ] + +class ScanSonarInputs(__ScanSonarRequiredInputs, total=False): + sonarqube_base_url: Annotated[ + str, + StepTypeConfig( + is_config=True, + msg="""SonarQube base URL not found. +Please provide the URL of your SonarQube instance using `--sonarqube_base_url=`. +For SonarCloud, this would be https://sonarcloud.io""", + ), + ] + + +class SonarVulnerability(TypedDict): + uri: str + startLine: int + endLine: int + affectedCode: str + messageText: str + +class ScanSonarOutputs(TypedDict): + files_to_patch: List[SonarVulnerability] diff --git a/patchwork/steps/__init__.py b/patchwork/steps/__init__.py index d74629a37..aed1e1548 100644 --- a/patchwork/steps/__init__.py +++ b/patchwork/steps/__init__.py @@ -43,6 +43,7 @@ from patchwork.steps.ReadPRs.ReadPRs import ReadPRs from patchwork.steps.ScanDepscan.ScanDepscan import ScanDepscan from patchwork.steps.ScanSemgrep.ScanSemgrep import ScanSemgrep +from patchwork.steps.ScanSonar.ScanSonar import ScanSonar from patchwork.steps.SimplifiedLLM.SimplifiedLLM import SimplifiedLLM from patchwork.steps.SimplifiedLLMOnce.SimplifiedLLMOnce import SimplifiedLLMOnce from patchwork.steps.SlackMessage.SlackMessage import SlackMessage @@ -91,6 +92,7 @@ "ResolveIssue", "ScanDepscan", "ScanSemgrep", + "ScanSonar", "SimplifiedLLM", "SimplifiedLLMOnce", "SimplifiedLLMOncePB", diff --git a/poetry.lock b/poetry.lock index 7dfae3396..61eea4ebc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. 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"watchfiles-1.0.3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:abd85de513eb83f5ec153a802348e7a5baa4588b818043848247e3e8986094e8"}, + {file = "watchfiles-1.0.3.tar.gz", hash = "sha256:f3ff7da165c99a5412fe5dd2304dd2dbaaaa5da718aad942dcb3a178eaa70c56"}, ] [package.dependencies] @@ -7081,4 +7073,4 @@ security = ["owasp-depscan", "semgrep"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "2c95f1c29e3671017b5f9ccc2f4cf42eb11481d78ffafe36cbca25758c496eb2" +content-hash = "d7b707a25412d05489928500349e867151fda0a99889d46ff2e2b4a079bb9d1e" diff --git a/pyproject.toml b/pyproject.toml index 1d324135d..1bb476a20 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.83" +version = "0.0.84" description = "" authors = ["patched.codes"] license = "AGPL" @@ -30,6 +30,7 @@ openai = "^1.46.1" tree-sitter-languages = "~1.10.2" python-gitlab = "^4.4.0" pygithub = "~2.1.1" +azure-devops = "~7.1.0b4" gitpython = "~3.1.40" pydantic = "~2.8.2" libcst = "~1.1.0" diff --git a/tests/common/test_app.py b/tests/common/test_app.py index 4dee354bc..3e4ea8bb3 100644 --- a/tests/common/test_app.py +++ b/tests/common/test_app.py @@ -53,7 +53,8 @@ def test_default_list_option_callback(runner): GenerateREADME GenerateUnitTests PRReview -ResolveIssue""" +ResolveIssue +SonarFix""" ) @@ -73,6 +74,7 @@ def test_config_list_option_callback(runner, config_dir, patchflow_file): GenerateUnitTests PRReview ResolveIssue +SonarFix {name_without_ext}""" ) diff --git a/tests/steps/test_ReadIssues.py b/tests/steps/test_ReadIssues.py index 0e66b5e99..96b8452e1 100644 --- a/tests/steps/test_ReadIssues.py +++ b/tests/steps/test_ReadIssues.py @@ -9,12 +9,22 @@ ( {"github_api_key": "key"}, "patchwork.common.client.scm.GithubClient.find_issue_by_url", - dict(title="", body="github pr body", comments=["nothing", "there"], description="Title:\n\n\nDescription:\ngithub pr body\n"), + dict( + title="", + body="github pr body", + comments=["nothing", "there"], + description="Title:\n\n\nDescription:\ngithub pr body\n", + ), ), ( {"gitlab_api_key": "key"}, "patchwork.common.client.scm.GitlabClient.find_issue_by_url", - dict(title="gitlab pr title", body="", comments=["something", "here"], description="Title:\ngitlab pr title\n\nDescription:\n\n"), + dict( + title="gitlab pr title", + body="", + comments=["something", "here"], + description="Title:\ngitlab pr title\n\nDescription:\n\n", + ), ), ], ) diff --git a/tests/steps/test_ScanSonar.py b/tests/steps/test_ScanSonar.py new file mode 100644 index 000000000..1e9228cff --- /dev/null +++ b/tests/steps/test_ScanSonar.py @@ -0,0 +1,53 @@ +from pathlib import Path + +import pytest +from unittest.mock import Mock, patch + +from patchwork.steps.ScanSonar.ScanSonar import ScanSonar +from patchwork.common.client.sonar import SonarClient, SonarVuln + +def test_scan_sonar(): + inputs = { + "sonarqube_project_key": "test-project", + "sonarqube_api_key": "test-token", + "sonarqube_base_url": "https://sonarcloud.io" + } + + path_to_resource_file = Path(__file__).parent.parent / "cicd" / "generate_docstring" / "python_test_file.py" + mock_vulns = { + str(path_to_resource_file): [ + SonarVuln( + start=13, + end=14, + cwe="CWE-79", + bug_msg="Test vulnerability" + ) + ] + } + + with patch.object(SonarClient, 'find_vulns', return_value=mock_vulns): + step = ScanSonar(inputs) + result = step.run() + + assert "files_to_patch" in result + vulns = result["files_to_patch"] + assert len(vulns) == 1 + + vuln = vulns[0] + assert vuln["uri"] == str(path_to_resource_file) + assert vuln["startLine"] == 0 + assert vuln["endLine"] == 24 + assert vuln["messageText"] == "Test vulnerability" + +def test_scan_sonar_error(): + inputs = { + "sonarqube_project_key": "test-project", + "sonarqube_api_key": "test-token", + "sonarqube_base_url": "https://sonarcloud.io" + } + + with patch.object(SonarClient, 'find_vulns', side_effect=Exception("Test error")): + step = ScanSonar(inputs) + with pytest.raises(Exception) as exc_info: + step.run() + assert str(exc_info.value) == "Test error" From eb727f4e9588e110bcd772b96c55bda009f8c6f3 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Thu, 19 Dec 2024 15:01:19 +0800 Subject: [PATCH 11/22] Add issue_url in pr body (#1116) * add issue_url in pr body * fix tests --- patchwork/steps/PR/typed.py | 1 + patchwork/steps/PreparePR/PreparePR.py | 20 ++++++++++---------- patchwork/steps/PreparePR/typed.py | 1 + tests/steps/test_PreparePR.py | 4 ---- 4 files changed, 12 insertions(+), 14 deletions(-) diff --git a/patchwork/steps/PR/typed.py b/patchwork/steps/PR/typed.py index cec3e3f2a..fc543e3ef 100644 --- a/patchwork/steps/PR/typed.py +++ b/patchwork/steps/PR/typed.py @@ -31,6 +31,7 @@ class PRInputs(TypedDict, total=False): scm_url: Annotated[str, StepTypeConfig(is_config=True)] gitlab_api_key: Annotated[str, StepTypeConfig(is_config=True)] github_api_key: Annotated[str, StepTypeConfig(is_config=True)] + issue_url: Annotated[str, StepTypeConfig(is_config=True)] class PROutputs(TypedDict): diff --git a/patchwork/steps/PreparePR/PreparePR.py b/patchwork/steps/PreparePR/PreparePR.py index 288557d2f..6203fb3d8 100644 --- a/patchwork/steps/PreparePR/PreparePR.py +++ b/patchwork/steps/PreparePR/PreparePR.py @@ -3,23 +3,23 @@ from patchwork.logger import logger from patchwork.step import Step, StepStatus +from patchwork.steps.PreparePR.typed import PreparePRInputs, PreparePROutputs -class PreparePR(Step): - required_keys = {"modified_code_files"} +class PreparePR(Step, input_class=PreparePRInputs, output_class=PreparePROutputs): def __init__(self, inputs: dict): super().__init__(inputs) - if not all(key in inputs.keys() for key in self.required_keys): - raise ValueError(f'Missing required data: "{self.required_keys}"') - - if len(inputs["modified_code_files"]) < 1: - logger.warning("No modified files to prepare a PR for.") self.modified_code_files = inputs["modified_code_files"] + if len(self.modified_code_files) < 1: + logger.warning("No modified files to prepare a PR for.") - self.header = f"This pull request from patched fixes {len(self.modified_code_files)} issues." - if "pr_header" in inputs.keys(): - self.header = inputs["pr_header"] + issue_url = inputs.get("issue_url") + self.header = inputs.get("pr_header") + if self.header is None and issue_url is None: + self.header = f"This pull request from patched fixes {len(self.modified_code_files)} issues." + elif self.header is None and issue_url is not None: + self.header = f"This pull request from patched fixes [issue]({issue_url})." def run(self) -> dict: if len(self.modified_code_files) == 0: diff --git a/patchwork/steps/PreparePR/typed.py b/patchwork/steps/PreparePR/typed.py index eda835196..c60a3d66e 100644 --- a/patchwork/steps/PreparePR/typed.py +++ b/patchwork/steps/PreparePR/typed.py @@ -9,6 +9,7 @@ class __PreparePRRequiredInputs(TypedDict): class PreparePRInputs(__PreparePRRequiredInputs, total=False): pr_header: Annotated[str, StepTypeConfig(is_config=True)] + issue_url: Annotated[str, StepTypeConfig(is_config=True)] class PreparePROutputs(TypedDict): diff --git a/tests/steps/test_PreparePR.py b/tests/steps/test_PreparePR.py index 864d2cd4e..c53bc745a 100644 --- a/tests/steps/test_PreparePR.py +++ b/tests/steps/test_PreparePR.py @@ -15,10 +15,6 @@ def prepare_pr_instance(): return PreparePR(inputs) -def test_init_required_keys(prepare_pr_instance): - assert prepare_pr_instance.required_keys == {"modified_code_files"} - - def test_init_inputs(prepare_pr_instance): assert prepare_pr_instance.modified_code_files == [ {"path": "file1", "start_line": 1, "end_line": 2, "commit_message": "commit msg"}, From 48b21fb75ec2b0fff6472f5a4719a410e80c2d45 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Fri, 20 Dec 2024 16:26:41 +0800 Subject: [PATCH 12/22] Fix anthropic (#1134) --- patchwork/common/client/llm/anthropic.py | 1 + pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/patchwork/common/client/llm/anthropic.py b/patchwork/common/client/llm/anthropic.py index 0bc7f98ae..e928e0d02 100644 --- a/patchwork/common/client/llm/anthropic.py +++ b/patchwork/common/client/llm/anthropic.py @@ -84,6 +84,7 @@ def __get_model_limit(self, model: str) -> int: return 200_000 - safety_margin def __adapt_input_messages(self, messages: Iterable[ChatCompletionMessageParam]) -> list[MessageParam]: + system = NOT_GIVEN new_messages = [] for message in messages: if message.get("role") == "system": diff --git a/pyproject.toml b/pyproject.toml index 1bb476a20..3cd563b39 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.84" +version = "0.0.85" description = "" authors = ["patched.codes"] license = "AGPL" From c0345eb909aa134c1aaff3cb865959f05c841fa2 Mon Sep 17 00:00:00 2001 From: Priyash Shah <89684873+plon-Susk7@users.noreply.github.com> Date: Mon, 23 Dec 2024 15:52:09 +0530 Subject: [PATCH 13/22] Added patchflow to generate usage example (#1034) * added patchflow to generate usage example * fix: changed name of patchflow --- .github/workflows/test.yml | 10 +++ .../GenerateCodeUsageExample.py | 61 +++++++++++++++++++ .../GenerateCodeUsageExample/README.md | 11 ++++ .../GenerateCodeUsageExample/__init__.py | 0 .../default_prompt.json | 15 +++++ .../GenerateCodeUsageExample/defaults.yml | 25 ++++++++ .../patchflows/GenerateUnitTests/README.md | 12 ---- patchwork/patchflows/__init__.py | 4 ++ 8 files changed, 126 insertions(+), 12 deletions(-) create mode 100644 patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py create mode 100644 patchwork/patchflows/GenerateCodeUsageExample/README.md create mode 100644 patchwork/patchflows/GenerateCodeUsageExample/__init__.py create mode 100644 patchwork/patchflows/GenerateCodeUsageExample/default_prompt.json create mode 100644 patchwork/patchflows/GenerateCodeUsageExample/defaults.yml delete mode 100644 patchwork/patchflows/GenerateUnitTests/README.md diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index fa4364fe3..ee31b3bde 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -13,7 +13,9 @@ on: - generatereadme-* - generatedocstring-* - generateunittests-* + - generatecodeusageexample-* - resolveissue-* + - demo* # Credits to https://blog.maximeheckel.com/posts/building-perfect-github-action-frontend-teams/#you-are-terminated @@ -231,6 +233,14 @@ jobs: --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --folder_path=tests/cicd/generate_docstring \ --disable_telemetry + + - name: Generate Code Usage Example + run: | + poetry run patchwork GenerateCodeUsageExample --log debug \ + --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ + --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ + --folder_path=tests/cicd/generate_docstring \ + --disable_telemetry - name: Generate README run: | diff --git a/patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py b/patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py new file mode 100644 index 000000000..853ae4f04 --- /dev/null +++ b/patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py @@ -0,0 +1,61 @@ +import json +from pathlib import Path +import yaml + +from patchwork.common.utils.step_typing import validate_steps_with_inputs +from patchwork.step import Step +from patchwork.steps import ( + LLM, + CallCode2Prompt, + ModifyCode, + PR +) + +_DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" +_DEFAULT_PROMPT_JSON = Path(__file__).parent / "default_prompt.json" + +class GenerateCodeUsageExample(Step): + def __init__(self, inputs): + super().__init__(inputs) + + final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) + if final_inputs is None: + final_inputs = {} + + final_inputs.update(inputs) + + final_inputs["prompt_id"] = "GenerateUsageExample" + if "folder_path" not in final_inputs.keys(): + final_inputs["folder_path"] = Path.cwd() + else: + final_inputs["folder_path"] = Path(final_inputs["folder_path"]) + + if "prompt_template_file" not in final_inputs: + final_inputs["prompt_template_file"] = _DEFAULT_PROMPT_JSON + + final_inputs["pr_title"] = f"PatchWork Usage Example generated" + final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" + + validate_steps_with_inputs( + set(final_inputs.keys()).union({"prompt_values","files_to_patch"}), LLM, CallCode2Prompt,ModifyCode,PR + ) + self.inputs = final_inputs + + def run(self): + outputs = CallCode2Prompt(self.inputs).run() + new_file_name = f"usage_example.{self.inputs['test_file_extension']}" + new_file_path = Path(outputs['uri']).with_name(new_file_name) + Path(outputs['uri']).rename(new_file_path) + outputs['uri'] = str(new_file_path) + self.inputs["response_partitions"] = {"patch": ["```", "\n", "```"]} + self.inputs["files_to_patch"] = self.inputs["prompt_values"] = [outputs] + outputs = LLM(self.inputs).run() + self.inputs.update(outputs) + outputs = ModifyCode(self.inputs).run() + self.inputs.update(outputs) + number = len(self.inputs["modified_code_files"]) + self.inputs["pr_header"] = f"This pull request adds usage example." + outputs = PR(self.inputs).run() + self.inputs.update(outputs) + + return self.inputs diff --git a/patchwork/patchflows/GenerateCodeUsageExample/README.md b/patchwork/patchflows/GenerateCodeUsageExample/README.md new file mode 100644 index 000000000..a60e7765e --- /dev/null +++ b/patchwork/patchflows/GenerateCodeUsageExample/README.md @@ -0,0 +1,11 @@ +## Contents of GenerateUsageExample Code + +### Inputs +- The code reads default inputs from a YAML file (`defaults.yml`) and a JSON file (`default_prompt.json`). +- The code takes user inputs and updates the default inputs accordingly. +- The code expects inputs like `folder_path`, `prompt_template_file`, `test_file_extension`, etc. + +### Outputs +- The code generates a usage example based on the provided inputs. +- It utilizes other steps like `CallCode2Prompt`, `ModifyCode`, and `PR` to create and process the example. +- The final output includes modified code files and information for creating a pull request. diff --git a/patchwork/patchflows/GenerateCodeUsageExample/__init__.py b/patchwork/patchflows/GenerateCodeUsageExample/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/patchwork/patchflows/GenerateCodeUsageExample/default_prompt.json b/patchwork/patchflows/GenerateCodeUsageExample/default_prompt.json new file mode 100644 index 000000000..3f18a4f54 --- /dev/null +++ b/patchwork/patchflows/GenerateCodeUsageExample/default_prompt.json @@ -0,0 +1,15 @@ +[ + { + "id": "GenerateUsageExample", + "prompts": [ + { + "role": "system", + "content": "You are a skilled technical writer specializing in creating concise, clear, and runnable usage examples for libraries, frameworks, and projects. Users will provide a description of the code or project, and you will generate examples that demonstrate practical use cases. Ensure examples are well-commented and runnable, with no extra explanation or formatting outside of the example code itself." + }, + { + "role": "user", + "content": "Description: {{fullContent}}" + } + ] + } +] diff --git a/patchwork/patchflows/GenerateCodeUsageExample/defaults.yml b/patchwork/patchflows/GenerateCodeUsageExample/defaults.yml new file mode 100644 index 000000000..d3a627b3d --- /dev/null +++ b/patchwork/patchflows/GenerateCodeUsageExample/defaults.yml @@ -0,0 +1,25 @@ +# CallLLM Inputs +# openai_api_key: required-for-chatgpt +# google_api_key: required-for-gemini +# model: gpt-4o +# client_base_url: https://api.openai.com/v1 +# Example HF model +# client_base_url: https://api-inference.huggingface.co/models/codellama/CodeLlama-70b-Instruct-hf/v1 +# model: codellama/CodeLlama-70b-Instruct-hf +# model_temperature: 0.2 +# model_top_p: 0.95 +# model_max_tokens: 2000 + +# folder_path : path/to/folder/with/class + +# Default value +test_file_extension : py + +# CommitChanges Inputs +disable_branch: false + +# CreatePR Inputs +disable_pr: false +force_pr_creation: true +# github_api_key: required-for-github-scm +# gitlab_api_key: required-for-gitlab-scm \ No newline at end of file diff --git a/patchwork/patchflows/GenerateUnitTests/README.md b/patchwork/patchflows/GenerateUnitTests/README.md deleted file mode 100644 index e6c748d52..000000000 --- a/patchwork/patchflows/GenerateUnitTests/README.md +++ /dev/null @@ -1,12 +0,0 @@ -## Code Documentation - -### Inputs -- The code reads default inputs from a YAML file (`defaults.yml`) and a JSON file (`default_prompt.json`). -- The code takes user inputs and updates the default inputs accordingly. -- The code expects inputs like `folder_path`, `prompt_template_file`, `test_file_extension`, etc. - -### Outputs -- The code generates unit tests based on the provided inputs. -- It creates a new test file with the specified extension. -- The code updates various parameters in the inputs dictionary during its execution. -- The final output includes the modified inputs after running the unit test generation process. diff --git a/patchwork/patchflows/__init__.py b/patchwork/patchflows/__init__.py index 277f03197..2cd14e8a6 100644 --- a/patchwork/patchflows/__init__.py +++ b/patchwork/patchflows/__init__.py @@ -6,6 +6,8 @@ from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests from .PRReview.PRReview import PRReview from .ResolveIssue.ResolveIssue import ResolveIssue +from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests +from .GenerateCodeUsageExample.GenerateCodeUsageExample import GenerateCodeUsageExample from .SonarFix.SonarFix import SonarFix __all__ = [ @@ -17,5 +19,7 @@ "GenerateDocstring", "GenerateUnitTests", "GenerateDiagram", + "GenerateCodeUsageExample", "SonarFix", ] + From e598d0f44f9fd49591d8bdf9f878c2ef547caa4a Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Tue, 24 Dec 2024 17:00:06 +0800 Subject: [PATCH 14/22] Add azure devops PR related implementations (#1142) * reset * Fixes --- patchwork/common/client/scm.py | 123 +++++++++++++----- .../steps/CreatePRComment/CreatePRComment.py | 4 +- patchwork/steps/CreatePRComment/typed.py | 5 +- patchwork/steps/ReadPRDiffs/ReadPRDiffs.py | 7 +- patchwork/steps/ReadPRDiffs/typed.py | 5 +- pyproject.toml | 2 +- tests/common/test_app.py | 2 + 7 files changed, 106 insertions(+), 42 deletions(-) diff --git a/patchwork/common/client/scm.py b/patchwork/common/client/scm.py index 22704f9a4..c0b6f47b4 100644 --- a/patchwork/common/client/scm.py +++ b/patchwork/common/client/scm.py @@ -4,26 +4,26 @@ import hashlib import itertools import time +from difflib import unified_diff from enum import Enum from itertools import chain from pathlib import Path -from urllib.parse import urlparse import git import gitlab.const -from attrs import define from azure.devops.connection import Connection from azure.devops.released.client_factory import ClientFactory from azure.devops.released.core.core_client import CoreClient from azure.devops.released.git.git_client import GitClient -from azure.devops.v7_1.git.models import GitPullRequest, GitPullRequestSearchCriteria, TeamProjectReference, GitRepository +from azure.devops.v7_1.git.models import GitPullRequest, GitPullRequestSearchCriteria, TeamProjectReference, \ + GitRepository, Comment, GitPullRequestCommentThread, GitTargetVersionDescriptor, GitBaseVersionDescriptor from github import Auth, Consts, Github, GithubException, PullRequest from github.GithubException import UnknownObjectException from gitlab import Gitlab, GitlabAuthenticationError, GitlabError from gitlab.v4.objects import ProjectMergeRequest from giturlparse import GitUrlParsed, parse from msrest.authentication import BasicAuthentication -from typing_extensions import Protocol, TypedDict +from typing_extensions import Protocol, TypedDict, Iterator from patchwork.logger import logger @@ -35,14 +35,6 @@ def get_slug_from_remote_url(remote_url: str) -> str: return slug -@define -class Comment: - path: str - body: str - start_line: int | None - end_line: int - - class IssueText(TypedDict): title: str body: str @@ -386,18 +378,67 @@ def url(self) -> str: def set_pr_description(self, body: str) -> None: final_body = PullRequestProtocol._apply_pr_template(self, body) body = GitPullRequest(description=final_body) - self.git_client.update_pull_request(body, repository_id=self._pr.repository.id, pull_request_id=self._pr.pull_request_id, project=self._pr.repository.project.id) + self._pr = self.git_client.update_pull_request(body, repository_id=self._pr.repository.id, pull_request_id=self._pr.pull_request_id, project=self._pr.repository.project.id) def create_comment( self, body: str, path: str | None = None, start_line: int | None = None, end_line: int | None = None ) -> str | None: - ... + try: + comment_body = Comment(content=body) + comment_thread_body = GitPullRequestCommentThread(comments=[comment_body]) + comment_thread = self.git_client.create_thread(comment_thread_body, repository_id=self._pr.repository.id, pull_request_id=self.id, project=self._pr.repository.project.id) + return body + except Exception as e: + logger.error(e) + return None + + def __iter_comments(self) -> Iterator[tuple[GitPullRequestCommentThread, list[Comment]]]: + threads = self.git_client.get_threads(repository_id=self._pr.repository.id, pull_request_id=self.id, project=self._pr.repository.project.id) + for thread in threads: + comments = self.git_client.get_comments(repository_id=self._pr.repository.id, pull_request_id=self.id, thread_id=thread.id, project=self._pr.repository.project.id) + yield thread, comments def reset_comments(self) -> None: - ... + for thread, comments in self.__iter_comments(): + comment_ids_to_delete = [] + for comment in comments: + if comment.content.startswith(_COMMENT_MARKER): + comment_ids_to_delete.append(comment.id) + if len(comment_ids_to_delete) == len(comments): + for comment_id in comment_ids_to_delete: + self.git_client.delete_comment(repository_id=self._pr.repository.id, pull_request_id=self.id, thread_id=thread.id, comment_id=comment_id, project=self._pr.repository.project.id) def texts(self) -> PullRequestTexts: - ... + target_branch = self._pr.last_merge_source_commit.commit_id + feature_branch = self._pr.last_merge_target_commit.commit_id + + repo = git.Repo(path=Path.cwd(), search_parent_directories=True) + for remote in repo.remotes: + remote.fetch() + target_commit = repo.commit(target_branch) + feature_commit = repo.commit(feature_branch) + + diff_index = feature_commit.diff(target_commit) + diffs = dict() + for diff in diff_index: + a_path = diff.a_path + b_path = diff.b_path + a_blob = diff.a_blob.data_stream.read().decode("utf-8") + b_blob = diff.b_blob.data_stream.read().decode("utf-8") + diff_lines = unified_diff(a_blob.splitlines(keepends=True), b_blob.splitlines(keepends=True), a_path, b_path) + diff_content = "".join(diff_lines) + diffs[a_path] = diff_content + + comments: list[PullRequestComment] = [] + for _, raw_comments in self.__iter_comments(): + for raw_comment in raw_comments: + comments.append(dict(user=raw_comment.author.display_name, body=raw_comment.content)) + return dict( + title=self._pr.title or "", + body=self._pr.description or "", + comments=comments, + diffs=diffs, + ) class GithubClient(ScmPlatformClientProtocol): DEFAULT_URL = Consts.DEFAULT_BASE_URL @@ -450,11 +491,11 @@ def find_issue_by_id(self, slug: str, issue_id: int) -> IssueText | None: logger.warn(f"Failed to get issue: {e}") return None - def get_pr_by_url(self, url: str) -> PullRequestProtocol | None: + def get_pr_by_url(self, url: str) -> GithubPullRequest | None: slug, pr_id = self.get_slug_and_id_from_url(url) return self.find_pr_by_id(slug, pr_id) - def find_pr_by_id(self, slug: str, pr_id: int) -> PullRequestProtocol | None: + def find_pr_by_id(self, slug: str, pr_id: int) -> GithubPullRequest | None: repo = self.github.get_repo(slug) try: pr = repo.get_pull(pr_id) @@ -508,7 +549,7 @@ def create_pr( body: str, original_branch: str, feature_branch: str, - ) -> PullRequestProtocol: + ) -> GithubPullRequest: # before creating a PR, check if one already exists repo = self.github.get_repo(slug) gh_pr = repo.create_pull(title=title, body=body, base=original_branch, head=feature_branch) @@ -579,11 +620,11 @@ def find_issue_by_id(self, slug: str, issue_id: int) -> IssueText | None: logger.warn(f"Failed to get issue: {e}") return None - def get_pr_by_url(self, url: str) -> PullRequestProtocol | None: + def get_pr_by_url(self, url: str) -> GitlabMergeRequest | None: slug, pr_id = self.get_slug_and_id_from_url(url) return self.find_pr_by_id(slug, pr_id) - def find_pr_by_id(self, slug: str, pr_id: int) -> PullRequestProtocol | None: + def find_pr_by_id(self, slug: str, pr_id: int) -> GitlabMergeRequest | None: project = self.gitlab.projects.get(slug) try: mr = project.mergerequests.get(pr_id) @@ -599,7 +640,7 @@ def find_prs( original_branch: str | None = None, feature_branch: str | None = None, limit: int | None = None, - ) -> list[PullRequestProtocol]: + ) -> list[GitlabMergeRequest]: project = self.gitlab.projects.get(slug) kwargs_list = dict(iterator=[True], state=[None], target_branch=[None], source_branch=[None]) @@ -630,7 +671,7 @@ def create_pr( body: str, original_branch: str, feature_branch: str, - ) -> PullRequestProtocol: + ) -> GitlabMergeRequest: # before creating a PR, check if one already exists project = self.gitlab.projects.get(slug) gl_mr = project.mergerequests.create( @@ -714,11 +755,27 @@ def set_url(self, url: str) -> None: self.__url = url def test(self) -> bool: - response = self.core_client.get_projects() - return next(iter(response), None) is not None + try: + proj = self.project + return True + except ValueError: + return False def get_slug_and_id_from_url(self, url: str) -> tuple[str, int] | None: - ... + url_parts = url.split("/") + if len(url_parts) == 1: + logger.error(f"Invalid URL: {url}") + return None + + try: + resource_id = int(url_parts[-1]) + except ValueError: + logger.error(f"Invalid URL: {url}") + return None + + slug = "/".join(url_parts[-6:-3]) + + return slug, resource_id def find_issue_by_url(self, url: str) -> IssueText | None: ... @@ -726,11 +783,13 @@ def find_issue_by_url(self, url: str) -> IssueText | None: def find_issue_by_id(self, slug: str, issue_id: int) -> IssueText | None: ... - def get_pr_by_url(self, url: str) -> PullRequestProtocol | None: - ... + def get_pr_by_url(self, url: str) -> AzureDevopsPullRequest | None: + slug, resource_id = self.get_slug_and_id_from_url(url) + return self.find_pr_by_id(slug, resource_id) - def find_pr_by_id(self, slug: str, pr_id: int) -> PullRequestProtocol | None: - ... + def find_pr_by_id(self, slug: str, pr_id: int) -> AzureDevopsPullRequest | None: + pr = self.git_client.get_pull_request(repository_id=self.repo.id, pull_request_id=pr_id, project=self.project.id) + return AzureDevopsPullRequest(pr, self.git_client, self.__pr_resource_html_url()) def find_prs( self, @@ -739,7 +798,7 @@ def find_prs( original_branch: str | None = None, feature_branch: str | None = None, limit: int | None = None, - ) -> list[PullRequestProtocol]: + ) -> list[AzureDevopsPullRequest]: kwargs_list = dict(status=[None], target_ref_name=[None], source_ref_name=[None]) if state is not None: @@ -777,7 +836,7 @@ def create_pr( body: str, original_branch: str, feature_branch: str, - ) -> PullRequestProtocol: + ) -> AzureDevopsPullRequest: # before creating a PR, check if one already exists pr_body = GitPullRequest( source_ref_name=f"refs/heads/{feature_branch}", diff --git a/patchwork/steps/CreatePRComment/CreatePRComment.py b/patchwork/steps/CreatePRComment/CreatePRComment.py index 5ca55b593..1af225b79 100644 --- a/patchwork/steps/CreatePRComment/CreatePRComment.py +++ b/patchwork/steps/CreatePRComment/CreatePRComment.py @@ -1,4 +1,4 @@ -from patchwork.common.client.scm import GithubClient, GitlabClient +from patchwork.common.client.scm import GithubClient, GitlabClient, AzureDevopsClient from patchwork.logger import logger from patchwork.step import Step, StepStatus @@ -15,6 +15,8 @@ def __init__(self, inputs: dict): self.scm_client = GithubClient(inputs["github_api_key"]) elif "gitlab_api_key" in inputs.keys(): self.scm_client = GitlabClient(inputs["gitlab_api_key"]) + elif "azuredevops_api_key" in inputs.keys(): + self.scm_client = AzureDevopsClient(inputs["azuredevops_api_key"]) else: raise ValueError(f'Missing required input data: "github_api_key" or "gitlab_api_key"') diff --git a/patchwork/steps/CreatePRComment/typed.py b/patchwork/steps/CreatePRComment/typed.py index b63d8b6bd..49a24a970 100644 --- a/patchwork/steps/CreatePRComment/typed.py +++ b/patchwork/steps/CreatePRComment/typed.py @@ -11,8 +11,9 @@ class __CreatePRCommentRequiredInputs(TypedDict): class CreatePRCommentInputs(__CreatePRCommentRequiredInputs, total=False): noisy_comments: Annotated[bool, StepTypeConfig(is_config=True)] scm_url: Annotated[str, StepTypeConfig(is_config=True)] - gitlab_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["github_api_key"])] - github_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["gitlab_api_key"])] + gitlab_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["github_api_key", "azuredevops_api_key"])] + github_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["gitlab_api_key", "azuredevops_api_key"])] + azuredevops_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["gitlab_api_key", "github_api_key"])] class CreatePRCommentOutputs(TypedDict): diff --git a/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py b/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py index 45b733fee..554b31419 100644 --- a/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py +++ b/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py @@ -1,6 +1,6 @@ from typing_extensions import List -from patchwork.common.client.scm import GithubClient, GitlabClient +from patchwork.common.client.scm import GithubClient, GitlabClient, AzureDevopsClient from patchwork.step import Step from patchwork.steps.ReadPRDiffs.typed import ReadPRDiffsInputs, ReadPRDiffsOutputs @@ -26,17 +26,16 @@ def filter_by_extension(file, extensions): class ReadPRDiffs(Step, input_class=ReadPRDiffsInputs, output_class=ReadPRDiffsOutputs): - required_keys = {"pr_url"} def __init__(self, inputs: dict): super().__init__(inputs) - if not all(key in inputs.keys() for key in self.required_keys): - raise ValueError(f'Missing required data: "{self.required_keys}"') if "github_api_key" in inputs.keys(): self.scm_client = GithubClient(inputs["github_api_key"]) elif "gitlab_api_key" in inputs.keys(): self.scm_client = GitlabClient(inputs["gitlab_api_key"]) + elif "azuredevops_api_key" in inputs.keys(): + self.scm_client = AzureDevopsClient(inputs["azuredevops_api_key"]) else: raise ValueError(f'Missing required input data: "github_api_key" or "gitlab_api_key"') diff --git a/patchwork/steps/ReadPRDiffs/typed.py b/patchwork/steps/ReadPRDiffs/typed.py index 13f732259..93322fd95 100644 --- a/patchwork/steps/ReadPRDiffs/typed.py +++ b/patchwork/steps/ReadPRDiffs/typed.py @@ -10,8 +10,9 @@ class __ReadPRDiffsRequiredInputs(TypedDict): class ReadPRDiffsInputs(__ReadPRDiffsRequiredInputs, total=False): scm_url: Annotated[str, StepTypeConfig(is_config=True)] - gitlab_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["github_api_key"])] - github_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["gitlab_api_key"])] + gitlab_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["github_api_key", "azuredevops_api_key"])] + github_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["gitlab_api_key", "azuredevops_api_key"])] + azuredevops_api_key: Annotated[str, StepTypeConfig(is_config=True, or_op=["gitlab_api_key", "github_api_key"])] class ReadPRDiffsOutputs(TypedDict): diff --git a/pyproject.toml b/pyproject.toml index 3cd563b39..4c9353170 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.85" +version = "0.0.86" description = "" authors = ["patched.codes"] license = "AGPL" diff --git a/tests/common/test_app.py b/tests/common/test_app.py index 3e4ea8bb3..f36e75fd8 100644 --- a/tests/common/test_app.py +++ b/tests/common/test_app.py @@ -48,6 +48,7 @@ def test_default_list_option_callback(runner): == """\ AutoFix DependencyUpgrade +GenerateCodeUsageExample GenerateDiagram GenerateDocstring GenerateREADME @@ -68,6 +69,7 @@ def test_config_list_option_callback(runner, config_dir, patchflow_file): == f"""\ AutoFix DependencyUpgrade +GenerateCodeUsageExample GenerateDiagram GenerateDocstring GenerateREADME From da1370b67b258cda56ceb0a31d504371309005e6 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Tue, 24 Dec 2024 17:32:05 +0800 Subject: [PATCH 15/22] fix case (#1147) --- patchwork/common/client/scm.py | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/patchwork/common/client/scm.py b/patchwork/common/client/scm.py index c0b6f47b4..33d7d6728 100644 --- a/patchwork/common/client/scm.py +++ b/patchwork/common/client/scm.py @@ -402,7 +402,7 @@ def reset_comments(self) -> None: for thread, comments in self.__iter_comments(): comment_ids_to_delete = [] for comment in comments: - if comment.content.startswith(_COMMENT_MARKER): + if comment.content is not None and comment.content.startswith(_COMMENT_MARKER): comment_ids_to_delete.append(comment.id) if len(comment_ids_to_delete) == len(comments): for comment_id in comment_ids_to_delete: diff --git a/pyproject.toml b/pyproject.toml index 4c9353170..9454cfb97 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.86" +version = "0.0.88" description = "" authors = ["patched.codes"] license = "AGPL" From 5dbe2bc9eb98488a41d80262f2dbc8b09264164e Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Mon, 6 Jan 2025 16:42:46 +0800 Subject: [PATCH 16/22] AgenticLLM Step (#1155) * lint and agentic llm * remove test changes * remove test changes * sav * use singular prompt value * revert multistage strategy * lint strat * fix weird descriptions and use new steps for ResolveIssue * disable again * change method of running patchflow in actions --- .github/workflows/test.yml | 43 +- patchwork/common/client/llm/anthropic.py | 98 +- patchwork/common/client/patched.py | 7 +- patchwork/common/client/scm.py | 73 +- patchwork/common/client/sonar.py | 12 +- .../multiturn_strategy/agentic_strategy.py | 173 +++ patchwork/common/tools/agentic_tools.py | 25 + patchwork/common/tools/code_edit_tools.py | 14 +- patchwork/common/tools/tool.py | 5 +- patchwork/common/utils/utils.py | 3 +- .../GenerateCodeUsageExample.py | 20 +- .../patchflows/ResolveIssue/ResolveIssue.py | 108 +- patchwork/patchflows/SonarFix/SonarFix.py | 8 +- patchwork/patchflows/__init__.py | 4 +- patchwork/steps/AgenticLLM/AgenticLLM.py | 30 + patchwork/steps/AgenticLLM/__init__.py | 0 patchwork/steps/AgenticLLM/typed.py | 43 + patchwork/steps/CreatePR/CreatePR.py | 3 +- .../steps/CreatePRComment/CreatePRComment.py | 2 +- patchwork/steps/ExtractCode/ExtractCode.py | 1 - patchwork/steps/FixIssue/FixIssue.py | 1 - patchwork/steps/FixIssue/typed.py | 2 +- patchwork/steps/PreparePR/PreparePR.py | 1 - patchwork/steps/ReadIssues/ReadIssues.py | 2 +- patchwork/steps/ReadPRDiffs/ReadPRDiffs.py | 3 +- patchwork/steps/ScanSonar/ScanSonar.py | 15 +- patchwork/steps/ScanSonar/__init__.py | 2 +- patchwork/steps/ScanSonar/typed.py | 6 +- patchwork/steps/__init__.py | 2 + poetry.lock | 1245 ++++++++--------- pyproject.toml | 2 +- tests/steps/test_ScanSonar.py | 33 +- 32 files changed, 1148 insertions(+), 838 deletions(-) create mode 100644 patchwork/common/multiturn_strategy/agentic_strategy.py create mode 100644 patchwork/common/tools/agentic_tools.py create mode 100644 patchwork/steps/AgenticLLM/AgenticLLM.py create mode 100644 patchwork/steps/AgenticLLM/__init__.py create mode 100644 patchwork/steps/AgenticLLM/typed.py diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index ee31b3bde..fc4a7562a 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -107,7 +107,8 @@ jobs: - name: AutoFix Patchwork run: | - poetry run patchwork AutoFix --log debug \ + source .venv/bin/activate + patchwork AutoFix --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --force_pr_creation \ @@ -115,7 +116,8 @@ jobs: - name: Dependency Upgrade run: | - poetry run patchwork DependencyUpgrade --log debug \ + source .venv/bin/activate + patchwork DependencyUpgrade --log debug \ --libraries_api_key=${{ secrets.LIBRARIES_KEY }} \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ @@ -124,6 +126,8 @@ jobs: --disable_telemetry rag-test: + # disabled because this currently takes too long + if: false runs-on: ubuntu-latest steps: - name: Checkout code @@ -158,14 +162,15 @@ jobs: if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: poetry install --no-interaction --only main --extras rag -# disabled because this currently takes too long -# - name: Resolve issue -# run: | -# poetry run patchwork ResolveIssue --log debug \ -# --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ -# --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ -# --issue_url=https://github.com/patched-codes/patchwork/issues/1039 \ -# --disable_telemetry + - name: Resolve issue + run: | + source .venv/bin/activate + patchwork ResolveIssue --log debug \ + --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ + --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ + --issue_url=https://github.com/patched-codes/patchwork/issues/1129 \ + --disable_telemetry + --max_llm_calls=10 main-test: runs-on: ubuntu-latest @@ -204,7 +209,8 @@ jobs: - name: PR Review run: | - poetry run patchwork PRReview --log debug \ + source .venv/bin/activate + patchwork PRReview --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --pr_url=https://github.com/patched-codes/patchwork/pull/${{ steps.findPr.outputs.number }} \ @@ -212,7 +218,8 @@ jobs: - name: Generate Docstring run: | - poetry run patchwork GenerateDocstring --log debug \ + source .venv/bin/activate + patchwork GenerateDocstring --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --base_path=tests/cicd/generate_docstring \ @@ -220,7 +227,8 @@ jobs: - name : Generate Diagram run: | - poetry run patchwork GenerateDiagram --log debug \ + source .venv/bin/activate + patchwork GenerateDiagram --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --folder_path=patchwork/steps \ @@ -228,7 +236,8 @@ jobs: - name: Generate UnitTests run: | - poetry run patchwork GenerateUnitTests --log debug \ + source .venv/bin/activate + patchwork GenerateUnitTests --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --folder_path=tests/cicd/generate_docstring \ @@ -236,7 +245,8 @@ jobs: - name: Generate Code Usage Example run: | - poetry run patchwork GenerateCodeUsageExample --log debug \ + source .venv/bin/activate + patchwork GenerateCodeUsageExample --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --folder_path=tests/cicd/generate_docstring \ @@ -244,6 +254,7 @@ jobs: - name: Generate README run: | + source .venv/bin/activate # Specify the parent folder you want to check PARENT_FOLDER="./patchwork/steps" # Command to run if README.md is not found @@ -256,7 +267,7 @@ jobs: # Convert to a Git-friendly branch name: replace spaces with underscores, remove slashes, etc. branch_name=$(echo "$base_name" | sed -e 's/[^a-zA-Z0-9]/_/g' -e 's/__*/_/g' -e 's/^_//g' -e 's/_$//g') - poetry run patchwork GenerateREADME --log debug \ + patchwork GenerateREADME --log debug \ --patched_api_key=${{ secrets.PATCHED_API_KEY }} \ --github_api_key=${{ secrets.SCM_GITHUB_KEY }} \ --filter=*.py \ diff --git a/patchwork/common/client/llm/anthropic.py b/patchwork/common/client/llm/anthropic.py index e928e0d02..e51a2d867 100644 --- a/patchwork/common/client/llm/anthropic.py +++ b/patchwork/common/client/llm/anthropic.py @@ -129,22 +129,22 @@ def __adapt_input_messages(self, messages: Iterable[ChatCompletionMessageParam]) return new_messages def __adapt_chat_completion_request( - self, - messages: Iterable[ChatCompletionMessageParam], - model: str, - frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, - logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, - logprobs: Optional[bool] | NotGiven = NOT_GIVEN, - max_tokens: Optional[int] | NotGiven = NOT_GIVEN, - n: Optional[int] | NotGiven = NOT_GIVEN, - presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, - response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, - stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, - temperature: Optional[float] | NotGiven = NOT_GIVEN, - tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, - tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, - top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, - top_p: Optional[float] | NotGiven = NOT_GIVEN, + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, ): system: Union[str, Iterable[TextBlockParam]] | NotGiven = NOT_GIVEN adapted_messages = self.__adapt_input_messages(messages) @@ -208,22 +208,22 @@ def is_model_supported(self, model: str) -> bool: return model in self.__definitely_allowed_models or model.startswith(self.__allowed_model_prefix) def is_prompt_supported( - self, - messages: Iterable[ChatCompletionMessageParam], - model: str, - frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, - logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, - logprobs: Optional[bool] | NotGiven = NOT_GIVEN, - max_tokens: Optional[int] | NotGiven = NOT_GIVEN, - n: Optional[int] | NotGiven = NOT_GIVEN, - presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, - response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, - stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, - temperature: Optional[float] | NotGiven = NOT_GIVEN, - tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, - tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, - top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, - top_p: Optional[float] | NotGiven = NOT_GIVEN, + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> int: model_limit = self.__get_model_limit(model) input_kwargs = self.__adapt_chat_completion_request( @@ -252,27 +252,27 @@ def is_prompt_supported( return model_limit - message_token_count.input_tokens def truncate_messages( - self, messages: Iterable[ChatCompletionMessageParam], model: str + self, messages: Iterable[ChatCompletionMessageParam], model: str ) -> Iterable[ChatCompletionMessageParam]: return self._truncate_messages(self, messages, model) def chat_completion( - self, - messages: Iterable[ChatCompletionMessageParam], - model: str, - frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, - logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, - logprobs: Optional[bool] | NotGiven = NOT_GIVEN, - max_tokens: Optional[int] | NotGiven = NOT_GIVEN, - n: Optional[int] | NotGiven = NOT_GIVEN, - presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, - response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, - stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, - temperature: Optional[float] | NotGiven = NOT_GIVEN, - tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, - tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, - top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, - top_p: Optional[float] | NotGiven = NOT_GIVEN, + self, + messages: Iterable[ChatCompletionMessageParam], + model: str, + frequency_penalty: Optional[float] | NotGiven = NOT_GIVEN, + logit_bias: Optional[Dict[str, int]] | NotGiven = NOT_GIVEN, + logprobs: Optional[bool] | NotGiven = NOT_GIVEN, + max_tokens: Optional[int] | NotGiven = NOT_GIVEN, + n: Optional[int] | NotGiven = NOT_GIVEN, + presence_penalty: Optional[float] | NotGiven = NOT_GIVEN, + response_format: completion_create_params.ResponseFormat | NotGiven = NOT_GIVEN, + stop: Union[Optional[str], List[str]] | NotGiven = NOT_GIVEN, + temperature: Optional[float] | NotGiven = NOT_GIVEN, + tools: Iterable[ChatCompletionToolParam] | NotGiven = NOT_GIVEN, + tool_choice: ChatCompletionToolChoiceOptionParam | NotGiven = NOT_GIVEN, + top_logprobs: Optional[int] | NotGiven = NOT_GIVEN, + top_p: Optional[float] | NotGiven = NOT_GIVEN, ) -> ChatCompletion: input_kwargs = self.__adapt_chat_completion_request( messages=messages, diff --git a/patchwork/common/client/patched.py b/patchwork/common/client/patched.py index b06d769b2..743b39828 100644 --- a/patchwork/common/client/patched.py +++ b/patchwork/common/client/patched.py @@ -245,12 +245,7 @@ def finish_record_patchflow_run(self, id: int, patchflow: str, repo: Repo, outpu response = self._post( url=self.url + "/v1/patchwork/", headers={"Authorization": f"Bearer {self.access_token}"}, - json={ - "id": id, - "url": repo.remotes.origin.url, - "patchflow": patchflow, - "outputs": outputs - }, + json={"id": id, "url": repo.remotes.origin.url, "patchflow": patchflow, "outputs": outputs}, ) if response is None: diff --git a/patchwork/common/client/scm.py b/patchwork/common/client/scm.py index 33d7d6728..47ae54ca3 100644 --- a/patchwork/common/client/scm.py +++ b/patchwork/common/client/scm.py @@ -15,15 +15,21 @@ from azure.devops.released.client_factory import ClientFactory from azure.devops.released.core.core_client import CoreClient from azure.devops.released.git.git_client import GitClient -from azure.devops.v7_1.git.models import GitPullRequest, GitPullRequestSearchCriteria, TeamProjectReference, \ - GitRepository, Comment, GitPullRequestCommentThread, GitTargetVersionDescriptor, GitBaseVersionDescriptor +from azure.devops.v7_1.git.models import ( + Comment, + GitPullRequest, + GitPullRequestCommentThread, + GitPullRequestSearchCriteria, + GitRepository, + TeamProjectReference, +) from github import Auth, Consts, Github, GithubException, PullRequest from github.GithubException import UnknownObjectException from gitlab import Gitlab, GitlabAuthenticationError, GitlabError from gitlab.v4.objects import ProjectMergeRequest from giturlparse import GitUrlParsed, parse from msrest.authentication import BasicAuthentication -from typing_extensions import Protocol, TypedDict, Iterator +from typing_extensions import Iterator, Protocol, TypedDict from patchwork.logger import logger @@ -359,6 +365,7 @@ def texts(self) -> PullRequestTexts: diffs={file.filename: file.patch for file in self._pr.get_files() if file.patch is not None}, ) + class AzureDevopsPullRequest(PullRequestProtocol): def __init__(self, pr: GitPullRequest, git_client: GitClient, pr_base_url: str): self._pr: GitPullRequest = pr @@ -378,24 +385,41 @@ def url(self) -> str: def set_pr_description(self, body: str) -> None: final_body = PullRequestProtocol._apply_pr_template(self, body) body = GitPullRequest(description=final_body) - self._pr = self.git_client.update_pull_request(body, repository_id=self._pr.repository.id, pull_request_id=self._pr.pull_request_id, project=self._pr.repository.project.id) + self._pr = self.git_client.update_pull_request( + body, + repository_id=self._pr.repository.id, + pull_request_id=self._pr.pull_request_id, + project=self._pr.repository.project.id, + ) def create_comment( - self, body: str, path: str | None = None, start_line: int | None = None, end_line: int | None = None + self, body: str, path: str | None = None, start_line: int | None = None, end_line: int | None = None ) -> str | None: try: comment_body = Comment(content=body) comment_thread_body = GitPullRequestCommentThread(comments=[comment_body]) - comment_thread = self.git_client.create_thread(comment_thread_body, repository_id=self._pr.repository.id, pull_request_id=self.id, project=self._pr.repository.project.id) + comment_thread = self.git_client.create_thread( + comment_thread_body, + repository_id=self._pr.repository.id, + pull_request_id=self.id, + project=self._pr.repository.project.id, + ) return body except Exception as e: logger.error(e) return None def __iter_comments(self) -> Iterator[tuple[GitPullRequestCommentThread, list[Comment]]]: - threads = self.git_client.get_threads(repository_id=self._pr.repository.id, pull_request_id=self.id, project=self._pr.repository.project.id) + threads = self.git_client.get_threads( + repository_id=self._pr.repository.id, pull_request_id=self.id, project=self._pr.repository.project.id + ) for thread in threads: - comments = self.git_client.get_comments(repository_id=self._pr.repository.id, pull_request_id=self.id, thread_id=thread.id, project=self._pr.repository.project.id) + comments = self.git_client.get_comments( + repository_id=self._pr.repository.id, + pull_request_id=self.id, + thread_id=thread.id, + project=self._pr.repository.project.id, + ) yield thread, comments def reset_comments(self) -> None: @@ -406,7 +430,13 @@ def reset_comments(self) -> None: comment_ids_to_delete.append(comment.id) if len(comment_ids_to_delete) == len(comments): for comment_id in comment_ids_to_delete: - self.git_client.delete_comment(repository_id=self._pr.repository.id, pull_request_id=self.id, thread_id=thread.id, comment_id=comment_id, project=self._pr.repository.project.id) + self.git_client.delete_comment( + repository_id=self._pr.repository.id, + pull_request_id=self.id, + thread_id=thread.id, + comment_id=comment_id, + project=self._pr.repository.project.id, + ) def texts(self) -> PullRequestTexts: target_branch = self._pr.last_merge_source_commit.commit_id @@ -425,7 +455,9 @@ def texts(self) -> PullRequestTexts: b_path = diff.b_path a_blob = diff.a_blob.data_stream.read().decode("utf-8") b_blob = diff.b_blob.data_stream.read().decode("utf-8") - diff_lines = unified_diff(a_blob.splitlines(keepends=True), b_blob.splitlines(keepends=True), a_path, b_path) + diff_lines = unified_diff( + a_blob.splitlines(keepends=True), b_blob.splitlines(keepends=True), a_path, b_path + ) diff_content = "".join(diff_lines) diffs[a_path] = diff_content @@ -440,6 +472,7 @@ def texts(self) -> PullRequestTexts: diffs=diffs, ) + class GithubClient(ScmPlatformClientProtocol): DEFAULT_URL = Consts.DEFAULT_BASE_URL @@ -701,7 +734,7 @@ class AzureDevopsClient(ScmPlatformClientProtocol): DEFAULT_URL = "https://dev.azure.com/" def __init__(self, access_token: str, url: str = DEFAULT_URL, remote: str = "origin"): - self.credentials = BasicAuthentication('', access_token) + self.credentials = BasicAuthentication("", access_token) self.__url = url self.__remote = remote git_repo = git.Repo(Path.cwd(), search_parent_directories=True) @@ -717,7 +750,6 @@ def __pr_resource_html_url(self): url += "/" return f"{url}{self.__org_name}/{self.__project_name}/_git/{self.__repo_name}/pullrequest/" - @functools.cached_property def clients(self) -> ClientFactory: url = self.__url @@ -740,7 +772,9 @@ def project(self) -> TeamProjectReference: projs = self.core_client.get_projects() proj = next((proj for proj in projs if proj.name == self.__project_name), None) if proj is None: - raise ValueError(f"Unable to determine project name from remote {self.__remote} url. Parsed project name: {self.__project_name}") + raise ValueError( + f"Unable to determine project name from remote {self.__remote} url. Parsed project name: {self.__project_name}" + ) return proj @functools.cached_property @@ -748,7 +782,9 @@ def repo(self) -> GitRepository: repos = self.git_client.get_repositories(project=self.project.id) git_repo = next((r for r in repos if r.name == self.__repo_name), None) if git_repo is None: - raise ValueError(f"Unable to determine repository name from remote {self.__remote} url. Parsed repository name: {self.__repo_name}") + raise ValueError( + f"Unable to determine repository name from remote {self.__remote} url. Parsed repository name: {self.__repo_name}" + ) return git_repo def set_url(self, url: str) -> None: @@ -788,7 +824,9 @@ def get_pr_by_url(self, url: str) -> AzureDevopsPullRequest | None: return self.find_pr_by_id(slug, resource_id) def find_pr_by_id(self, slug: str, pr_id: int) -> AzureDevopsPullRequest | None: - pr = self.git_client.get_pull_request(repository_id=self.repo.id, pull_request_id=pr_id, project=self.project.id) + pr = self.git_client.get_pull_request( + repository_id=self.repo.id, pull_request_id=pr_id, project=self.project.id + ) return AzureDevopsPullRequest(pr, self.git_client, self.__pr_resource_html_url()) def find_prs( @@ -817,9 +855,7 @@ def find_prs( **kwargs, ) pr_instances = self.git_client.get_pull_requests( - project=self.project.id, - repository_id=self.repo.id, - search_criteria=git_pr_search + project=self.project.id, repository_id=self.repo.id, search_criteria=git_pr_search ) page_list.append(pr_instances) @@ -854,4 +890,3 @@ def create_issue_comment( self, slug: str, issue_text: str, title: str | None = None, issue_id: int | None = None ) -> str: ... - diff --git a/patchwork/common/client/sonar.py b/patchwork/common/client/sonar.py index dc059fa4e..e57fcb745 100644 --- a/patchwork/common/client/sonar.py +++ b/patchwork/common/client/sonar.py @@ -1,8 +1,9 @@ from collections import defaultdict +from dataclasses import dataclass from typing import Optional, Union import requests -from dataclasses import dataclass + @dataclass class SonarVuln: @@ -65,7 +66,12 @@ def _find_hotspots(self, project_key: str): headers = {"Authorization": f"Bearer {self._access_token}"} # Define the parameters for Hotspot API request - params: dict[str, Union[str, int]] = {"p": page, "ps": page_size, "projectKey": project_key, "status": "TO_REVIEW"} + params: dict[str, Union[str, int]] = { + "p": page, + "ps": page_size, + "projectKey": project_key, + "status": "TO_REVIEW", + } url = self._url + self.__hotspot_path @@ -146,4 +152,4 @@ def find_issues(self, project_key: str): start=issue["textRange"]["startLine"], end=issue["textRange"]["endLine"], ) - yield path, vuln \ No newline at end of file + yield path, vuln diff --git a/patchwork/common/multiturn_strategy/agentic_strategy.py b/patchwork/common/multiturn_strategy/agentic_strategy.py new file mode 100644 index 000000000..b86fe1fe3 --- /dev/null +++ b/patchwork/common/multiturn_strategy/agentic_strategy.py @@ -0,0 +1,173 @@ +from __future__ import annotations + +import abc +import json +import logging +import random +import string +import sys +from json import JSONDecodeError +from pathlib import Path + +import chevron +from openai.types.chat import ChatCompletionMessageParam +from openai.types.chat.chat_completion_tool_param import ChatCompletionToolParam + +from patchwork.common.client.llm.protocol import LlmClient +from patchwork.common.tools import CodeEditTool, Tool +from patchwork.common.tools.agentic_tools import EndTool + + +class Role(abc.ABC): + def __init__(self, llm_client: LlmClient, tool_set: dict[str, Tool]): + self.llm_client = llm_client + self.tool_set = tool_set + self.history: list[ChatCompletionMessageParam] = [] + + def generate_reply(self, message: str) -> str: + self.history.append(dict(role="user", content=message)) + input_kwargs = dict( + messages=self.history, + model="claude-3-5-sonnet-latest", + tools=self.__get_tools_spec(), + max_tokens=8096, + ) + is_prompt_safe = self.llm_client.is_prompt_supported(**input_kwargs) + if is_prompt_safe < 0: + raise ValueError("The subsequent prompt is not supported, due to large size.") + response = self.llm_client.chat_completion(**input_kwargs) + choices = response.choices or [] + + message_content = "" + for choice in choices: + new_message = choice.message.to_dict() + self.history.append(new_message) + if new_message.get("tool_calls") is not None: + self.history.extend(self.__execute_tools(new_message)) + else: + message_content = new_message["content"] + + return message_content + + def __execute_tools(self, last_message: ChatCompletionMessageParam) -> list[ChatCompletionMessageParam]: + rv = [] + for tool_call in last_message.get("tool_calls", []): + tool_name_to_use = tool_call.get("function", {}).get("name") + tool_to_use = self.tool_set.get(tool_name_to_use, None) + if tool_to_use is None: + logging.info("LLM just used an non-existent tool!") + continue + + logging.info(f"Running tool: {tool_name_to_use}") + try: + tool_arguments = tool_call.get("function", {}).get("arguments", "{}") + tool_kwargs = json.loads(tool_arguments) + tool_output = tool_to_use.execute(**tool_kwargs) + except JSONDecodeError: + tool_output = "Arguments must be passed through a valid JSON object" + + rv.append({"tool_call_id": tool_call.get("id", ""), "role": "tool", "content": tool_output}) + + return rv + + def __get_tools_spec(self) -> list[ChatCompletionToolParam]: + return [ + dict( + type="function", + function={"name": k, **v.json_schema}, + ) + for k, v in self.tool_set.items() + ] + + +class UserProxy(Role): + def __init__( + self, llm_client: LlmClient, tool_set: dict[str, Tool], system_prompt: str = None, reply_message: str = "" + ): + super().__init__(llm_client, tool_set) + if system_prompt is not None: + self.history.append(dict(role="system", content=system_prompt)) + + self.__reply_message = reply_message + + def generate_reply(self, message: str) -> str: + if self.__reply_message is not None: + self.history.append(dict(role="user", content=message)) + self.history.append(dict(role="assistant", content=self.__reply_message)) + return self.__reply_message + else: + return super().generate_reply(message) + + +class Assistant(Role): + def __init__(self, llm_client: LlmClient, tool_set: dict[str, Tool], system_prompt: str = None): + super().__init__(llm_client, tool_set) + if system_prompt is not None: + self.history.append(dict(role="system", content=system_prompt)) + + +class AgenticStrategy: + def __init__( + self, + llm_client: LlmClient, + tool_set: dict[str, Tool], + template_data: dict[str, str], + system_prompt_template: str, + user_prompt_template: str, + *args, + **kwargs, + ): + self.tool_set = dict(end=EndTool(), **tool_set) + self.__template_data = template_data + self.__user_prompt_template = user_prompt_template + self.__assistant_role = Assistant(llm_client, self.tool_set, self.__render_prompt(system_prompt_template)) + self.__user_role = UserProxy(llm_client, dict()) + + def __render_prompt(self, prompt_template: str) -> str: + chevron.render.__globals__["_html_escape"] = lambda x: x + return chevron.render( + template=prompt_template, + data=self.__template_data, + partials_path=None, + partials_ext="".join(random.choices(string.ascii_uppercase + string.digits, k=32)), + partials_dict=dict(), + ) + + def __get_initial_prompt(self) -> list[ChatCompletionMessageParam]: + return [dict(role="user", content=self.__render_prompt(self.__user_prompt_template))] + + def __is_session_completed(self) -> bool: + for message in reversed(self.__assistant_role.history): + if message.get("tool") is not None: + continue + if message.get("content") == EndTool.MESSAGE: + return True + + return False + + def execute(self, limit: int | None = None) -> None: + message = self.__render_prompt(self.__user_prompt_template) + try: + for i in range(limit or self.__limit or sys.maxsize): + self.run_count = i + 1 + for role in [self.__assistant_role, self.__user_role]: + message = role.generate_reply(message) + if self.__is_session_completed(): + break + except Exception as e: + logging.error(e) + finally: + self.run_count = 0 + + @property + def history(self): + return self.__user_role.history + + @property + def tool_records(self): + for tool in self.tool_set.values(): + if isinstance(tool, CodeEditTool): + cwd = Path.cwd() + modified_files = [file_path.relative_to(cwd) for file_path in tool.tool_records["modified_files"]] + return [dict(path=str(file)) for file in modified_files] + return [] diff --git a/patchwork/common/tools/agentic_tools.py b/patchwork/common/tools/agentic_tools.py new file mode 100644 index 000000000..0cc6f8321 --- /dev/null +++ b/patchwork/common/tools/agentic_tools.py @@ -0,0 +1,25 @@ +from __future__ import annotations + +from patchwork.common.tools.tool import Tool + + +class EndTool(Tool, tool_name="end", abc_register=False): + MESSAGE = "Ended" + + def __init__(self): + super().__init__() + + @property + def json_schema(self) -> dict: + return { + "name": "end", + "description": "End the conversation. Call this when you are done with the conversation.", + "input_schema": { + "type": "object", + "properties": {}, + "required": [], + }, + } + + def execute(self, *args, **kwargs) -> str: + return self.MESSAGE diff --git a/patchwork/common/tools/code_edit_tools.py b/patchwork/common/tools/code_edit_tools.py index 158de4dc2..a461c9c66 100644 --- a/patchwork/common/tools/code_edit_tools.py +++ b/patchwork/common/tools/code_edit_tools.py @@ -1,6 +1,5 @@ from __future__ import annotations -import os from pathlib import Path from typing import Literal @@ -9,9 +8,9 @@ class CodeEditTool(Tool, tool_name="code_edit_tool"): - def __init__(self, path: Path): + def __init__(self, path: Path | str): super().__init__() - self.repo_path = path + self.repo_path = Path(path) self.modified_files = set() @property @@ -25,7 +24,6 @@ def json_schema(self) -> dict: * If `path` is a file, `view` displays the result of applying `cat -n`. If `path` is a directory, `view` lists non-hidden files and directories up to 2 levels deep * The `create` command cannot be used if the specified `path` already exists as a file * If a `command` generates a long output, it will be truncated and marked with `` -* The `undo_edit` command will revert the last edit made to the file at `path` * The working directory is always {self.repo_path} Notes for using the `str_replace` command: @@ -37,8 +35,8 @@ def json_schema(self) -> dict: "properties": { "command": { "type": "string", - "enum": ["view", "create", "str_replace", "insert", "undo_edit"], - "description": "The commands to run. Allowed options are: `view`, `create`, `str_replace`, `insert`, `undo_edit`.", + "enum": ["view", "create", "str_replace", "insert"], + "description": "The commands to run. Allowed options are: `view`, `create`, `str_replace`, `insert`.", }, "file_text": { "description": "Required parameter of `create` command, with the content of the file to be created.", @@ -141,12 +139,12 @@ def __view(self, abs_path: Path, view_range): rv = "" if len(directories) > 0: rv += "Directories: \n" - rv += '\n'.join(directories) + rv += "\n".join(directories) rv += "\n" if len(files) > 0: rv += "Files: \n" - rv += '\n'.join(files) + rv += "\n".join(files) return rv diff --git a/patchwork/common/tools/tool.py b/patchwork/common/tools/tool.py index ad7e62989..f9011c14b 100644 --- a/patchwork/common/tools/tool.py +++ b/patchwork/common/tools/tool.py @@ -5,7 +5,10 @@ class Tool(ABC): __internal_map: dict[str, Type["Tool"]] = dict() - def __init_subclass__(cls, tool_name=None, **kwargs): + def __init_subclass__(cls, tool_name=None, abc_register=True, **kwargs): + if not abc_register: + return + cls_name = tool_name or cls.__name__ if cls_name in cls.__internal_map.keys(): raise ValueError(f"Duplicate subclass name for class {cls.__name__}: {cls_name}") diff --git a/patchwork/common/utils/utils.py b/patchwork/common/utils/utils.py index 4ddf2ef74..bd5e24fc5 100644 --- a/patchwork/common/utils/utils.py +++ b/patchwork/common/utils/utils.py @@ -9,7 +9,7 @@ import tiktoken from chardet.universaldetector import UniversalDetector from git import Head, Repo -from typing_extensions import Any, Callable, Iterable, Counter +from typing_extensions import Any, Callable, Counter from patchwork.common.utils.dependency import chromadb from patchwork.logger import logger @@ -18,6 +18,7 @@ _CLEANUP_FILES: set[Path] = set() _NEWLINES = {"\n", "\r\n", "\r"} + def detect_newline(path: str | Path) -> str | None: with open(path, "r", newline="") as f: lines = f.read().splitlines(keepends=True) diff --git a/patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py b/patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py index 853ae4f04..5afac3709 100644 --- a/patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py +++ b/patchwork/patchflows/GenerateCodeUsageExample/GenerateCodeUsageExample.py @@ -1,19 +1,15 @@ -import json from pathlib import Path + import yaml from patchwork.common.utils.step_typing import validate_steps_with_inputs from patchwork.step import Step -from patchwork.steps import ( - LLM, - CallCode2Prompt, - ModifyCode, - PR -) +from patchwork.steps import LLM, PR, CallCode2Prompt, ModifyCode _DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" _DEFAULT_PROMPT_JSON = Path(__file__).parent / "default_prompt.json" + class GenerateCodeUsageExample(Step): def __init__(self, inputs): super().__init__(inputs) @@ -21,7 +17,7 @@ def __init__(self, inputs): final_inputs = yaml.safe_load(_DEFAULT_INPUT_FILE.read_text()) if final_inputs is None: final_inputs = {} - + final_inputs.update(inputs) final_inputs["prompt_id"] = "GenerateUsageExample" @@ -37,16 +33,16 @@ def __init__(self, inputs): final_inputs["branch_prefix"] = f"{self.__class__.__name__.lower()}-" validate_steps_with_inputs( - set(final_inputs.keys()).union({"prompt_values","files_to_patch"}), LLM, CallCode2Prompt,ModifyCode,PR + set(final_inputs.keys()).union({"prompt_values", "files_to_patch"}), LLM, CallCode2Prompt, ModifyCode, PR ) self.inputs = final_inputs def run(self): outputs = CallCode2Prompt(self.inputs).run() new_file_name = f"usage_example.{self.inputs['test_file_extension']}" - new_file_path = Path(outputs['uri']).with_name(new_file_name) - Path(outputs['uri']).rename(new_file_path) - outputs['uri'] = str(new_file_path) + new_file_path = Path(outputs["uri"]).with_name(new_file_name) + Path(outputs["uri"]).rename(new_file_path) + outputs["uri"] = str(new_file_path) self.inputs["response_partitions"] = {"patch": ["```", "\n", "```"]} self.inputs["files_to_patch"] = self.inputs["prompt_values"] = [outputs] outputs = LLM(self.inputs).run() diff --git a/patchwork/patchflows/ResolveIssue/ResolveIssue.py b/patchwork/patchflows/ResolveIssue/ResolveIssue.py index 22bef8101..850318d30 100644 --- a/patchwork/patchflows/ResolveIssue/ResolveIssue.py +++ b/patchwork/patchflows/ResolveIssue/ResolveIssue.py @@ -5,7 +5,7 @@ from patchwork.common.utils.progress_bar import PatchflowProgressBar from patchwork.common.utils.step_typing import validate_steps_with_inputs from patchwork.step import Step -from patchwork.steps import PR, FixIssue, ReadIssues +from patchwork.steps import PR, AgenticLLM, FixIssue, ReadIssues, SimplifiedLLMOnce _DEFAULT_INPUT_FILE = Path(__file__).parent / "defaults.yml" @@ -30,14 +30,114 @@ def __init__(self, inputs: dict): PR, ) + # currently only support claude + final_inputs["model"] = "claude-3-5-sonnet-latest" self.inputs = final_inputs def run(self) -> dict: outputs = ReadIssues(self.inputs).run() self.inputs["issue_description"] = outputs - outputs = FixIssue(self.inputs).run() - self.inputs.update(outputs) - self.inputs["pr_header"] = f'This pull request from patchwork fixes {self.inputs["issue_url"]}.' + + outputs = AgenticLLM( + dict( + **self.inputs, + prompt_value=dict( + path=self.inputs.get("base_path", str(Path.cwd())), + issue=outputs["issue_description"], + ), + system_prompt="""\ +You are a senior software engineer tasked to analyze a issue. +Your analysis will be used to guide the junior engineer to resolve this issue. +""", + user_prompt="""\ + +{{path}} + +I've uploaded a code repository in the current working directory. + +Consider the following issue: + + +{{issue}} + + +Let's first explore and analyze the repository to understand where the issue is located. +Please analyze the repository structure and try to locate the specific files and code sections that need to be modified. + +1. First explore the repo structure +2. Identify the relevant files that likely need changes +3. Once you've confirmed the error, identify the specific code sections that need to be modified + +Provide your findings in this format: + + List the relevant files that need changes + Description of the specific changes needed + + """, + max_llm_calls=200, + ) + ).run() + outputs = SimplifiedLLMOnce( + dict( + **self.inputs, + json_schema=dict( + files=["The files to be changed"], changes_needed="Description of the specific changes needed" + ), + user_prompt="""\ +From the following conversation history extract the following information: + + List the relevant files that need changes + Description of the specific changes needed + + + +{{conversation_history}} + +""", + prompt_value=outputs, + ) + ).run() + + outputs = AgenticLLM( + dict( + **self.inputs, + prompt_value=dict( + path=self.inputs.get("base_path", str(Path.cwd())), + analysis_result=outputs, + ), + system_prompt="""\ +You are a senior software engineer assigned to fix an issue. Your lead engineer have already analyzed the issue and provided his analysis for you for reference. +""", + user_prompt="""\ + +{{path}} + +I've uploaded a code repository in the current working directory. + +Based on our analysis: + + + + {{analysis_result.files}} + + + {{analysis_result.changes_needed}} + + + +Let's implement the necessary changes: + +1. Edit the sourcecode of the repo to resolve the issue +2. Think about edge cases and make sure your fix handles them as well + +I've already taken care of all changes to any of the test files described in the PR. +This means you DON'T have to modify the testing logic or any of the tests in any way! +""", + max_llm_calls=200, + ) + ).run() + self.inputs["modified_files"] = outputs["tool_records"] + outputs = PR(self.inputs).run() self.inputs.update(outputs) diff --git a/patchwork/patchflows/SonarFix/SonarFix.py b/patchwork/patchflows/SonarFix/SonarFix.py index a3edce3c6..07c320d3d 100644 --- a/patchwork/patchflows/SonarFix/SonarFix.py +++ b/patchwork/patchflows/SonarFix/SonarFix.py @@ -1,4 +1,3 @@ -import json from enum import IntEnum from pathlib import Path @@ -19,7 +18,8 @@ ModifyCode, PreparePR, PreparePrompt, - ScanSemgrep, ScanSonar, + ScanSemgrep, + ScanSonar, ) _DEFAULT_PROMPT_JSON = Path(__file__).parent / "default_prompt.json" @@ -89,9 +89,7 @@ def run(self) -> dict: self.inputs.update(outputs) for extracted_response in self.inputs["extracted_responses"]: - response_compatibility = Compatibility.from_str( - extracted_response.get("compatibility", "UNKNOWN").strip() - ) + response_compatibility = Compatibility.from_str(extracted_response.get("compatibility", "UNKNOWN").strip()) if response_compatibility < self.compatibility_threshold: extracted_response.pop("patch", None) diff --git a/patchwork/patchflows/__init__.py b/patchwork/patchflows/__init__.py index 2cd14e8a6..93af42023 100644 --- a/patchwork/patchflows/__init__.py +++ b/patchwork/patchflows/__init__.py @@ -1,13 +1,12 @@ from .AutoFix.AutoFix import AutoFix from .DependencyUpgrade.DependencyUpgrade import DependencyUpgrade +from .GenerateCodeUsageExample.GenerateCodeUsageExample import GenerateCodeUsageExample from .GenerateDiagram.GenerateDiagram import GenerateDiagram from .GenerateDocstring.GenerateDocstring import GenerateDocstring from .GenerateREADME.GenerateREADME import GenerateREADME from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests from .PRReview.PRReview import PRReview from .ResolveIssue.ResolveIssue import ResolveIssue -from .GenerateUnitTests.GenerateUnitTests import GenerateUnitTests -from .GenerateCodeUsageExample.GenerateCodeUsageExample import GenerateCodeUsageExample from .SonarFix.SonarFix import SonarFix __all__ = [ @@ -22,4 +21,3 @@ "GenerateCodeUsageExample", "SonarFix", ] - diff --git a/patchwork/steps/AgenticLLM/AgenticLLM.py b/patchwork/steps/AgenticLLM/AgenticLLM.py new file mode 100644 index 000000000..77bbc5a92 --- /dev/null +++ b/patchwork/steps/AgenticLLM/AgenticLLM.py @@ -0,0 +1,30 @@ +from pathlib import Path + +from patchwork.common.client.llm.aio import AioLlmClient +from patchwork.common.multiturn_strategy.agentic_strategy import AgenticStrategy +from patchwork.common.tools import Tool +from patchwork.step import Step +from patchwork.steps.AgenticLLM.typed import AgenticLLMInputs, AgenticLLMOutputs + + +class AgenticLLM(Step, input_class=AgenticLLMInputs, output_class=AgenticLLMOutputs): + def __init__(self, inputs): + super().__init__(inputs) + base_path = inputs.get("base_path") + if base_path is None: + base_path = str(Path.cwd()) + self.conversation_limit = int(int(inputs.get("max_llm_calls", 2)) / 2) + self.agentic_strategy = AgenticStrategy( + llm_client=AioLlmClient.create_aio_client(inputs), + tool_set=Tool.get_tools(path=base_path), + template_data=inputs.get("prompt_value"), + system_prompt_template=inputs.get("system_prompt"), + user_prompt_template=inputs.get("user_prompt"), + ) + + def run(self) -> dict: + self.agentic_strategy.execute(limit=self.conversation_limit) + return dict( + conversation_history=self.agentic_strategy.history, + tool_records=self.agentic_strategy.tool_records, + ) diff --git a/patchwork/steps/AgenticLLM/__init__.py b/patchwork/steps/AgenticLLM/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/patchwork/steps/AgenticLLM/typed.py b/patchwork/steps/AgenticLLM/typed.py new file mode 100644 index 000000000..f0d52bac0 --- /dev/null +++ b/patchwork/steps/AgenticLLM/typed.py @@ -0,0 +1,43 @@ +from typing_extensions import Annotated, Any, Dict, List, TypedDict + +from patchwork.common.utils.step_typing import StepTypeConfig +from patchwork.steps.CallLLM.CallLLM import TOKEN_URL + + +class AgenticLLMInputs(TypedDict, total=False): + prompt_value: Dict[str, Any] + system_prompt: str + user_prompt: str + max_llm_calls: Annotated[int, StepTypeConfig(is_config=True)] + model_args: Annotated[str, StepTypeConfig(is_config=True)] + client_args: Annotated[str, StepTypeConfig(is_config=True)] + openai_api_key: Annotated[ + str, StepTypeConfig(is_config=True, or_op=["patched_api_key", "google_api_key", "anthropic_api_key"]) + ] + anthropic_api_key: Annotated[ + str, StepTypeConfig(is_config=True, or_op=["patched_api_key", "google_api_key", "openai_api_key"]) + ] + patched_api_key: Annotated[ + str, + StepTypeConfig( + is_config=True, + or_op=["openai_api_key", "google_api_key", "anthropic_api_key"], + msg=f"""\ +Model API key not found. +Please login at: "{TOKEN_URL}" +Please go to the Integration's tab and generate an API key. +Please copy the access token that is generated, and add `--patched_api_key=` to the command line. + +If you are using a OpenAI API Key, please set `--openai_api_key=`.""", + ), + ] + google_api_key: Annotated[ + str, StepTypeConfig(is_config=True, or_op=["patched_api_key", "openai_api_key", "anthropic_api_key"]) + ] + + +class AgenticLLMOutputs(TypedDict): + conversation_history: List[Dict] + tool_records: List[Dict] + # request_tokens: int + # response_tokens: int diff --git a/patchwork/steps/CreatePR/CreatePR.py b/patchwork/steps/CreatePR/CreatePR.py index ba2be895e..024531ad1 100644 --- a/patchwork/steps/CreatePR/CreatePR.py +++ b/patchwork/steps/CreatePR/CreatePR.py @@ -4,10 +4,11 @@ from git.exc import GitCommandError from patchwork.common.client.scm import ( + AzureDevopsClient, GithubClient, GitlabClient, ScmPlatformClientProtocol, - get_slug_from_remote_url, AzureDevopsClient, + get_slug_from_remote_url, ) from patchwork.logger import logger from patchwork.step import Step, StepStatus diff --git a/patchwork/steps/CreatePRComment/CreatePRComment.py b/patchwork/steps/CreatePRComment/CreatePRComment.py index 1af225b79..d23469dc9 100644 --- a/patchwork/steps/CreatePRComment/CreatePRComment.py +++ b/patchwork/steps/CreatePRComment/CreatePRComment.py @@ -1,4 +1,4 @@ -from patchwork.common.client.scm import GithubClient, GitlabClient, AzureDevopsClient +from patchwork.common.client.scm import AzureDevopsClient, GithubClient, GitlabClient from patchwork.logger import logger from patchwork.step import Step, StepStatus diff --git a/patchwork/steps/ExtractCode/ExtractCode.py b/patchwork/steps/ExtractCode/ExtractCode.py index 6a03252e3..2a8443c43 100644 --- a/patchwork/steps/ExtractCode/ExtractCode.py +++ b/patchwork/steps/ExtractCode/ExtractCode.py @@ -4,7 +4,6 @@ import sys from collections import defaultdict from enum import IntEnum -from logging import LogRecord from pathlib import Path from urllib.parse import urlparse diff --git a/patchwork/steps/FixIssue/FixIssue.py b/patchwork/steps/FixIssue/FixIssue.py index edf8f3a15..7652ede25 100644 --- a/patchwork/steps/FixIssue/FixIssue.py +++ b/patchwork/steps/FixIssue/FixIssue.py @@ -13,7 +13,6 @@ AnalyzeImplementStrategy, ) from patchwork.common.tools import CodeEditTool, Tool -from patchwork.logger import logger from patchwork.step import Step from patchwork.steps.FixIssue.typed import FixIssueInputs, FixIssueOutputs diff --git a/patchwork/steps/FixIssue/typed.py b/patchwork/steps/FixIssue/typed.py index 7c88e21b5..35732a6fa 100644 --- a/patchwork/steps/FixIssue/typed.py +++ b/patchwork/steps/FixIssue/typed.py @@ -1,4 +1,4 @@ -from typing_extensions import Annotated, Dict, TypedDict, List +from typing_extensions import Annotated, Dict, List, TypedDict from patchwork.common.constants import TOKEN_URL from patchwork.common.utils.step_typing import StepTypeConfig diff --git a/patchwork/steps/PreparePR/PreparePR.py b/patchwork/steps/PreparePR/PreparePR.py index 6203fb3d8..ee6bc1096 100644 --- a/patchwork/steps/PreparePR/PreparePR.py +++ b/patchwork/steps/PreparePR/PreparePR.py @@ -7,7 +7,6 @@ class PreparePR(Step, input_class=PreparePRInputs, output_class=PreparePROutputs): - def __init__(self, inputs: dict): super().__init__(inputs) self.modified_code_files = inputs["modified_code_files"] diff --git a/patchwork/steps/ReadIssues/ReadIssues.py b/patchwork/steps/ReadIssues/ReadIssues.py index 63abc3809..048c0b740 100644 --- a/patchwork/steps/ReadIssues/ReadIssues.py +++ b/patchwork/steps/ReadIssues/ReadIssues.py @@ -40,5 +40,5 @@ def run(self) -> dict: Description: {self.issue.get("body")} -""" +""", ) diff --git a/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py b/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py index 554b31419..07b1b1d25 100644 --- a/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py +++ b/patchwork/steps/ReadPRDiffs/ReadPRDiffs.py @@ -1,6 +1,6 @@ from typing_extensions import List -from patchwork.common.client.scm import GithubClient, GitlabClient, AzureDevopsClient +from patchwork.common.client.scm import AzureDevopsClient, GithubClient, GitlabClient from patchwork.step import Step from patchwork.steps.ReadPRDiffs.typed import ReadPRDiffsInputs, ReadPRDiffsOutputs @@ -26,7 +26,6 @@ def filter_by_extension(file, extensions): class ReadPRDiffs(Step, input_class=ReadPRDiffsInputs, output_class=ReadPRDiffsOutputs): - def __init__(self, inputs: dict): super().__init__(inputs) diff --git a/patchwork/steps/ScanSonar/ScanSonar.py b/patchwork/steps/ScanSonar/ScanSonar.py index cdd80df75..973af4f91 100644 --- a/patchwork/steps/ScanSonar/ScanSonar.py +++ b/patchwork/steps/ScanSonar/ScanSonar.py @@ -1,14 +1,15 @@ from typing import List -from patchwork.step import Step, StepStatus from patchwork.common.client.sonar import SonarClient +from patchwork.step import Step, StepStatus from patchwork.steps.ExtractCode.ExtractCode import read_and_get_source_code_context from patchwork.steps.ScanSonar.typed import ( - ScanSonarInputs, + ScanSonarInputs, ScanSonarOutputs, - SonarVulnerability + SonarVulnerability, ) + class ScanSonar(Step, input_class=ScanSonarInputs, output_class=ScanSonarOutputs): def __init__(self, inputs: dict): super().__init__(inputs) @@ -25,9 +26,9 @@ def __init__(self, inputs: dict): def run(self) -> dict: try: vulns_by_path = self.client.find_vulns(self.project_key) - + files_to_patch: List[SonarVulnerability] = [] - + for file_path, vulns in vulns_by_path.items(): for vuln in vulns: data = read_and_get_source_code_context(file_path, vuln.start, vuln.end, self.context_length) @@ -43,10 +44,10 @@ def run(self) -> dict: messageText=vuln.bug_msg, ) files_to_patch.append(vulnerability) - + self.set_status(StepStatus.COMPLETED, "Successfully collected SonarQube results") return dict(files_to_patch=files_to_patch) - + except Exception as e: self.set_status(StepStatus.FAILED, f"Failed to collect SonarQube results: {str(e)}") raise diff --git a/patchwork/steps/ScanSonar/__init__.py b/patchwork/steps/ScanSonar/__init__.py index 70a487aaf..1901fbe5f 100644 --- a/patchwork/steps/ScanSonar/__init__.py +++ b/patchwork/steps/ScanSonar/__init__.py @@ -1,4 +1,4 @@ from .ScanSonar import ScanSonar from .typed import ScanSonarInputs, ScanSonarOutputs, SonarVulnerability -__all__ = ["ScanSonar", "ScanSonarInputs", "ScanSonarOutputs", "SonarVulnerability"] \ No newline at end of file +__all__ = ["ScanSonar", "ScanSonarInputs", "ScanSonarOutputs", "SonarVulnerability"] diff --git a/patchwork/steps/ScanSonar/typed.py b/patchwork/steps/ScanSonar/typed.py index 09a28db70..6fef64273 100644 --- a/patchwork/steps/ScanSonar/typed.py +++ b/patchwork/steps/ScanSonar/typed.py @@ -1,6 +1,8 @@ -from typing_extensions import Annotated, TypedDict, List +from typing_extensions import Annotated, List, TypedDict + from patchwork.common.utils.step_typing import StepTypeConfig + class __ScanSonarRequiredInputs(TypedDict): sonarqube_api_key: Annotated[ str, @@ -20,6 +22,7 @@ class __ScanSonarRequiredInputs(TypedDict): ), ] + class ScanSonarInputs(__ScanSonarRequiredInputs, total=False): sonarqube_base_url: Annotated[ str, @@ -39,5 +42,6 @@ class SonarVulnerability(TypedDict): affectedCode: str messageText: str + class ScanSonarOutputs(TypedDict): files_to_patch: List[SonarVulnerability] diff --git a/patchwork/steps/__init__.py b/patchwork/steps/__init__.py index aed1e1548..deef1bffe 100644 --- a/patchwork/steps/__init__.py +++ b/patchwork/steps/__init__.py @@ -1,3 +1,4 @@ +from patchwork.steps.AgenticLLM.AgenticLLM import AgenticLLM from patchwork.steps.AnalyzeImpact.AnalyzeImpact import AnalyzeImpact from patchwork.steps.CallAPI.CallAPI import CallAPI from patchwork.steps.CallCode2Prompt.CallCode2Prompt import CallCode2Prompt @@ -56,6 +57,7 @@ SimplifiedLLMOncePB = SimplifiedLLMOnce __all__ = [ + "AgenticLLM", "AnalyzeImpact", 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"pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"] -type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (>=1.12,<1.14)", "pytest-mypy"] +test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"] +type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (==1.14.*)", "pytest-mypy"] [[package]] name = "shellingham" @@ -5729,13 +5630,13 @@ optional = ["SQLAlchemy (>=1.4,<3)", "aiodns (>1.0)", "aiohttp (>=3.7.3,<4)", "b [[package]] name = "smmap" -version = "5.0.1" +version = "5.0.2" description = "A pure Python implementation of a sliding window memory map manager" optional = false python-versions = ">=3.7" files = [ - {file = "smmap-5.0.1-py3-none-any.whl", hash = "sha256:e6d8668fa5f93e706934a62d7b4db19c8d9eb8cf2adbb75ef1b675aa332b69da"}, - {file = "smmap-5.0.1.tar.gz", hash = "sha256:dceeb6c0028fdb6734471eb07c0cd2aae706ccaecab45965ee83f11c8d3b1f62"}, + {file = "smmap-5.0.2-py3-none-any.whl", hash = "sha256:b30115f0def7d7531d22a0fb6502488d879e75b260a9db4d0819cfb25403af5e"}, + {file = "smmap-5.0.2.tar.gz", hash = "sha256:26ea65a03958fa0c8a1c7e8c7a58fdc77221b8910f6be2131affade476898ad5"}, ] [[package]] @@ -5800,13 +5701,13 @@ widechars = ["wcwidth"] [[package]] name = "taskgroup" -version = "0.2.1" +version = "0.2.2" description = "backport of asyncio.TaskGroup, asyncio.Runner and asyncio.timeout" optional = true python-versions = "*" files = [ - {file = "taskgroup-0.2.1-py2.py3-none-any.whl", hash = "sha256:bff020b6e63408d1bcf952486cce05ed4c4e0747743c4762eb10b35726c89ab3"}, - {file = "taskgroup-0.2.1.tar.gz", hash = "sha256:11fa9c2db1037188ac0b60c70fa979243d00b1fee1a6e61e3171c21c1af75f78"}, + {file = "taskgroup-0.2.2-py2.py3-none-any.whl", hash = "sha256:e2c53121609f4ae97303e9ea1524304b4de6faf9eb2c9280c7f87976479a52fb"}, + {file = "taskgroup-0.2.2.tar.gz", hash = "sha256:078483ac3e78f2e3f973e2edbf6941374fbea81b9c5d0a96f51d297717f4752d"}, ] [package.dependencies] @@ -6028,13 +5929,13 @@ telegram = ["requests"] [[package]] name = "transformers" -version = "4.47.0" +version = "4.47.1" description = "State-of-the-art Machine Learning for JAX, PyTorch and TensorFlow" optional = true python-versions = ">=3.9.0" files = [ - {file = "transformers-4.47.0-py3-none-any.whl", hash = "sha256:a8e1bafdaae69abdda3cad638fe392e37c86d2ce0ecfcae11d60abb8f949ff4d"}, - {file = "transformers-4.47.0.tar.gz", hash = "sha256:f8ead7a5a4f6937bb507e66508e5e002dc5930f7b6122a9259c37b099d0f3b19"}, + {file = "transformers-4.47.1-py3-none-any.whl", hash = "sha256:d2f5d19bb6283cd66c893ec7e6d931d6370bbf1cc93633326ff1f41a40046c9c"}, + {file = "transformers-4.47.1.tar.gz", hash = "sha256:6c29c05a5f595e278481166539202bf8641281536df1c42357ee58a45d0a564a"}, ] [package.dependencies] @@ -6325,13 +6226,13 @@ files = [ [[package]] name = "urllib3" -version = "2.2.3" +version = "2.3.0" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "urllib3-2.2.3-py3-none-any.whl", hash = "sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac"}, - {file = "urllib3-2.2.3.tar.gz", hash = "sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"}, + {file = "urllib3-2.3.0-py3-none-any.whl", hash = "sha256:1cee9ad369867bfdbbb48b7dd50374c0967a0bb7710050facf0dd6911440e3df"}, + {file = "urllib3-2.3.0.tar.gz", hash = "sha256:f8c5449b3cf0861679ce7e0503c7b44b5ec981bec0d1d3795a07f1ba96f0204d"}, ] [package.extras] @@ -6419,13 +6320,13 @@ test = ["aiohttp (>=3.10.5)", "flake8 (>=5.0,<6.0)", "mypy (>=0.800)", "psutil", [[package]] name = "virtualenv" -version = "20.28.0" +version = "20.28.1" description = "Virtual Python Environment builder" optional = false python-versions = ">=3.8" files = [ - {file = "virtualenv-20.28.0-py3-none-any.whl", hash = "sha256:23eae1b4516ecd610481eda647f3a7c09aea295055337331bb4e6892ecce47b0"}, - {file = "virtualenv-20.28.0.tar.gz", hash = "sha256:2c9c3262bb8e7b87ea801d715fae4495e6032450c71d2309be9550e7364049aa"}, + {file = "virtualenv-20.28.1-py3-none-any.whl", hash = "sha256:412773c85d4dab0409b83ec36f7a6499e72eaf08c80e81e9576bca61831c71cb"}, + {file = "virtualenv-20.28.1.tar.gz", hash = "sha256:5d34ab240fdb5d21549b76f9e8ff3af28252f5499fb6d6f031adac4e5a8c5329"}, ] [package.dependencies] diff --git a/pyproject.toml b/pyproject.toml index 9454cfb97..93f1edf8c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.88" +version = "0.0.89" description = "" authors = ["patched.codes"] license = "AGPL" diff --git a/tests/steps/test_ScanSonar.py b/tests/steps/test_ScanSonar.py index 1e9228cff..d2c2bd306 100644 --- a/tests/steps/test_ScanSonar.py +++ b/tests/steps/test_ScanSonar.py @@ -1,52 +1,45 @@ from pathlib import Path +from unittest.mock import patch import pytest -from unittest.mock import Mock, patch -from patchwork.steps.ScanSonar.ScanSonar import ScanSonar from patchwork.common.client.sonar import SonarClient, SonarVuln +from patchwork.steps.ScanSonar.ScanSonar import ScanSonar + def test_scan_sonar(): inputs = { "sonarqube_project_key": "test-project", "sonarqube_api_key": "test-token", - "sonarqube_base_url": "https://sonarcloud.io" + "sonarqube_base_url": "https://sonarcloud.io", } path_to_resource_file = Path(__file__).parent.parent / "cicd" / "generate_docstring" / "python_test_file.py" - mock_vulns = { - str(path_to_resource_file): [ - SonarVuln( - start=13, - end=14, - cwe="CWE-79", - bug_msg="Test vulnerability" - ) - ] - } - - with patch.object(SonarClient, 'find_vulns', return_value=mock_vulns): + mock_vulns = {str(path_to_resource_file): [SonarVuln(start=13, end=14, cwe="CWE-79", bug_msg="Test vulnerability")]} + + with patch.object(SonarClient, "find_vulns", return_value=mock_vulns): step = ScanSonar(inputs) result = step.run() - + assert "files_to_patch" in result vulns = result["files_to_patch"] assert len(vulns) == 1 - + vuln = vulns[0] assert vuln["uri"] == str(path_to_resource_file) assert vuln["startLine"] == 0 assert vuln["endLine"] == 24 assert vuln["messageText"] == "Test vulnerability" + def test_scan_sonar_error(): inputs = { "sonarqube_project_key": "test-project", "sonarqube_api_key": "test-token", - "sonarqube_base_url": "https://sonarcloud.io" + "sonarqube_base_url": "https://sonarcloud.io", } - - with patch.object(SonarClient, 'find_vulns', side_effect=Exception("Test error")): + + with patch.object(SonarClient, "find_vulns", side_effect=Exception("Test error")): step = ScanSonar(inputs) with pytest.raises(Exception) as exc_info: step.run() From 3e81f255dd71c646b084e7a175d6bdde11cfbe42 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Tue, 7 Jan 2025 13:53:30 +0800 Subject: [PATCH 17/22] fix (#1169) --- patchwork/common/tools/code_edit_tools.py | 2 +- patchwork/steps/AgenticLLM/typed.py | 3 +-- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 4 deletions(-) diff --git a/patchwork/common/tools/code_edit_tools.py b/patchwork/common/tools/code_edit_tools.py index a461c9c66..48c7701b0 100644 --- a/patchwork/common/tools/code_edit_tools.py +++ b/patchwork/common/tools/code_edit_tools.py @@ -10,7 +10,7 @@ class CodeEditTool(Tool, tool_name="code_edit_tool"): def __init__(self, path: Path | str): super().__init__() - self.repo_path = Path(path) + self.repo_path = Path(path).resolve() self.modified_files = set() @property diff --git a/patchwork/steps/AgenticLLM/typed.py b/patchwork/steps/AgenticLLM/typed.py index f0d52bac0..5e698215a 100644 --- a/patchwork/steps/AgenticLLM/typed.py +++ b/patchwork/steps/AgenticLLM/typed.py @@ -5,12 +5,11 @@ class AgenticLLMInputs(TypedDict, total=False): + base_path: str prompt_value: Dict[str, Any] system_prompt: str user_prompt: str max_llm_calls: Annotated[int, StepTypeConfig(is_config=True)] - model_args: Annotated[str, StepTypeConfig(is_config=True)] - client_args: Annotated[str, StepTypeConfig(is_config=True)] openai_api_key: Annotated[ str, StepTypeConfig(is_config=True, or_op=["patched_api_key", "google_api_key", "anthropic_api_key"]) ] diff --git a/pyproject.toml b/pyproject.toml index 93f1edf8c..aa7a33390 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.89" +version = "0.0.90" description = "" authors = ["patched.codes"] license = "AGPL" From 497cbac1f4d4bb21521a8cd128568a2a178d964f Mon Sep 17 00:00:00 2001 From: "devin-ai-integration[bot]" <158243242+devin-ai-integration[bot]@users.noreply.github.com> Date: Wed, 15 Jan 2025 13:31:25 +0800 Subject: [PATCH 18/22] feat: add diff object to FixIssue & ModifyCode steps (#1192) * feat: add diff object to FixIssue and ModifyCode step outputs - Add diff field to ModifiedFile and ModifiedCodeFile types - Include file content diffs in FixIssue output - Add before/after diff information to ModifyCode output - Keep changes minimal while maintaining existing functionality Co-Authored-By: Patched * refactor: improve diff generation in FixIssue and ModifyCode steps Co-Authored-By: Patched * fix: address diff generation, security, and file handling issues for PR #1192 Co-Authored-By: Patched * refactor: remove git dependency in FixIssue, switch to in-memory diff in FixIssue & ModifyCode Co-Authored-By: Patched * feat: use git diff when in git repo, empty string otherwise Co-Authored-By: Patched * refactor: replace print statements with logger.warning calls Co-Authored-By: Patched * Some logic changes and more succint code * bump patchwork version --------- Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com> Co-authored-by: Patched Co-authored-by: TIANYOU CHEN <42710806+CTY-git@users.noreply.github.com> --- patchwork/steps/FixIssue/FixIssue.py | 72 ++++++++++++++++++++---- patchwork/steps/FixIssue/typed.py | 18 +++++- patchwork/steps/ModifyCode/ModifyCode.py | 71 +++++++++++++++++++---- patchwork/steps/ModifyCode/typed.py | 16 ++++++ pyproject.toml | 2 +- 5 files changed, 157 insertions(+), 22 deletions(-) diff --git a/patchwork/steps/FixIssue/FixIssue.py b/patchwork/steps/FixIssue/FixIssue.py index 7652ede25..bcb81e7a2 100644 --- a/patchwork/steps/FixIssue/FixIssue.py +++ b/patchwork/steps/FixIssue/FixIssue.py @@ -1,8 +1,10 @@ +import difflib import re from pathlib import Path from typing import Any, Optional -from git import Repo +from git import Repo, InvalidGitRepositoryError +from patchwork.logger import logger from openai.types.chat import ChatCompletionMessageParam from patchwork.common.client.llm.aio import AioLlmClient @@ -97,11 +99,31 @@ def is_stop(self, messages: list[ChatCompletionMessageParam]) -> bool: class FixIssue(Step, input_class=FixIssueInputs, output_class=FixIssueOutputs): def __init__(self, inputs): + """Initialize the FixIssue step. + + Args: + inputs: Dictionary containing input parameters including: + - base_path: Optional path to the repository root + - Other LLM-related parameters + """ super().__init__(inputs) - self.base_path = inputs.get("base_path") - if self.base_path is None: - repo = Repo(Path.cwd(), search_parent_directories=True) - self.base_path = repo.working_tree_dir + cwd = str(Path.cwd()) + original_base_path = inputs.get("base_path") + + if original_base_path is not None: + original_base_path = str(Path(str(original_base_path)).resolve()) + + # Check if we're in a git repository + try: + self.repo = Repo(original_base_path or cwd, search_parent_directories=True) + except (InvalidGitRepositoryError, Exception): + self.repo = None + + repo_working_dir = None + if self.repo is not None: + repo_working_dir = self.repo.working_dir + + self.base_path = original_base_path or repo_working_dir or cwd llm_client = AioLlmClient.create_aio_client(inputs) if llm_client is None: @@ -122,10 +144,40 @@ def __init__(self, inputs): ) def run(self): + """Execute the FixIssue step. + + This method: + 1. Executes the multi-turn LLM conversation to analyze and fix the issue + 2. Tracks file modifications made by the CodeEditTool + 3. Generates in-memory diffs for all modified files + + Returns: + dict: Dictionary containing list of modified files with their diffs + """ self.multiturn_llm_call.execute(limit=100) + + modified_files = [] + cwd = Path.cwd() for tool in self.multiturn_llm_call.tool_set.values(): - if isinstance(tool, CodeEditTool): - cwd = Path.cwd() - modified_files = [file_path.relative_to(cwd) for file_path in tool.tool_records["modified_files"]] - return dict(modified_files=[{"path": str(file)} for file in modified_files]) - return dict() + if not isinstance(tool, CodeEditTool): + continue + tool_modified_files = [ + dict(path=str(file_path.relative_to(cwd)), diff="") + for file_path in tool.tool_records["modified_files"] + ] + modified_files.extend(tool_modified_files) + + # Generate diffs for modified files + # Only try to generate git diff if we're in a git repository + if self.repo is not None: + for modified_file in modified_files: + file = modified_file["path"] + try: + # Try to get the diff using git + diff = self.repo.git.diff('HEAD', file) + modified_file["diff"] = diff or "" + except Exception as e: + # Git-specific errors (untracked files, etc) - keep empty diff + logger.warning(f"Could not get git diff for {file}: {str(e)}") + + return dict(modified_files=modified_files) diff --git a/patchwork/steps/FixIssue/typed.py b/patchwork/steps/FixIssue/typed.py index 35732a6fa..2ead5452f 100644 --- a/patchwork/steps/FixIssue/typed.py +++ b/patchwork/steps/FixIssue/typed.py @@ -35,5 +35,21 @@ class FixIssueInputs(__FixIssueRequiredInputs, total=False): ] +class ModifiedFile(TypedDict): + """Represents a file that has been modified by the FixIssue step. + + Attributes: + path: The relative path to the modified file from the repository root + diff: A unified diff string showing the changes made to the file. + Generated using Python's difflib to compare the original and + modified file contents in memory. + + Note: + The diff is generated by comparing file contents before and after + modifications, without relying on version control systems. + """ + path: str + diff: str + class FixIssueOutputs(TypedDict): - modified_files: List[Dict] + modified_files: List[ModifiedFile] diff --git a/patchwork/steps/ModifyCode/ModifyCode.py b/patchwork/steps/ModifyCode/ModifyCode.py index f7c6d7e4f..5f517c1e4 100644 --- a/patchwork/steps/ModifyCode/ModifyCode.py +++ b/patchwork/steps/ModifyCode/ModifyCode.py @@ -1,13 +1,21 @@ from __future__ import annotations +import difflib from pathlib import Path +from patchwork.logger import logger from patchwork.step import Step, StepStatus -def save_file_contents(file_path, content): - """Utility function to save content to a file.""" - with open(file_path, "w") as file: +def save_file_contents(file_path: str | Path, content: str) -> None: + """Utility function to save content to a file. + + Args: + file_path: Path to the file to save content to (str or Path) + content: Content to write to the file + """ + path = Path(file_path) + with path.open("w") as file: file.write(content) @@ -33,20 +41,26 @@ def handle_indent(src: list[str], target: list[str], start: int, end: int) -> li def replace_code_in_file( - file_path: str, + file_path: str | Path, start_line: int | None, end_line: int | None, new_code: str, ) -> None: + """Replace code in a file at the specified line range. + + Args: + file_path: Path to the file to modify (str or Path) + start_line: Starting line number (1-based) + end_line: Ending line number (1-based) + new_code: New code to insert + """ path = Path(file_path) new_code_lines = new_code.splitlines(keepends=True) if len(new_code_lines) > 0 and not new_code_lines[-1].endswith("\n"): new_code_lines[-1] += "\n" if path.exists() and start_line is not None and end_line is not None: - """Replaces specified lines in a file with new code.""" text = path.read_text() - lines = text.splitlines(keepends=True) # Insert the new code at the start line after converting it into a list of lines @@ -55,7 +69,7 @@ def replace_code_in_file( lines = new_code_lines # Save the modified contents back to the file - save_file_contents(file_path, "".join(lines)) + save_file_contents(path, "".join(lines)) class ModifyCode(Step): @@ -81,7 +95,8 @@ def run(self) -> dict: return dict(modified_code_files=[]) for code_snippet, extracted_response in sorted_list: - uri = code_snippet.get("uri") + # Use Path for consistent path handling + file_path = Path(code_snippet.get("uri", "")) start_line = code_snippet.get("startLine") end_line = code_snippet.get("endLine") new_code = extracted_response.get("patch") @@ -89,8 +104,44 @@ def run(self) -> dict: if new_code is None: continue - replace_code_in_file(uri, start_line, end_line, new_code) - modified_code_file = dict(path=uri, start_line=start_line, end_line=end_line, **extracted_response) + # Get the original content for diffing + diff = "" + try: + # Store original content in memory + original_content = file_path.read_text() if file_path.exists() else "" + + # Apply the changes + replace_code_in_file(file_path, start_line, end_line, new_code) + + # Read modified content + current_content = file_path.read_text() if file_path.exists() else "" + + # Generate unified diff + fromfile = f"a/{file_path}" + tofile = f"b/{file_path}" + diff = "".join(difflib.unified_diff( + original_content.splitlines(keepends=True), + current_content.splitlines(keepends=True), + fromfile=fromfile, + tofile=tofile + )) + + if not diff and new_code: # If no diff but we have new code (new file) + diff = f"+++ {file_path}\n{new_code}" + except (OSError, IOError) as e: + logger.warning(f"Failed to generate diff for {file_path}: {str(e)}") + # Still proceed with the modification even if diff generation fails + replace_code_in_file(file_path, start_line, end_line, new_code) + diff = f"+++ {file_path}\n{new_code}" # Use new code as diff on error + + # Create the modified code file dictionary + modified_code_file = dict( + path=str(file_path), + start_line=start_line, + end_line=end_line, + diff=diff, + **extracted_response + ) modified_code_files.append(modified_code_file) return dict(modified_code_files=modified_code_files) diff --git a/patchwork/steps/ModifyCode/typed.py b/patchwork/steps/ModifyCode/typed.py index 2cfba5e8f..6f26f79b4 100644 --- a/patchwork/steps/ModifyCode/typed.py +++ b/patchwork/steps/ModifyCode/typed.py @@ -11,6 +11,22 @@ class ModifyCodeOutputs(TypedDict): class ModifiedCodeFile(TypedDict, total=False): + """Represents a file that has been modified by the ModifyCode step. + + Attributes: + path: The path to the modified file + start_line: The starting line number of the modification (1-based) + end_line: The ending line number of the modification (1-based) + diff: A unified diff string showing the changes made to the file. + Generated using Python's difflib for in-memory comparison + of original and modified file contents. + + Note: + The diff field is generated using difflib.unified_diff() to compare + the original and modified file contents in memory, ensuring efficient + and secure diff generation. + """ path: str start_line: int end_line: int + diff: str diff --git a/pyproject.toml b/pyproject.toml index aa7a33390..9d5da77d1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.90" +version = "0.0.91" description = "" authors = ["patched.codes"] license = "AGPL" From 5a7c5237d4cca2d298cab968393f8c2f4830cc47 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Thu, 16 Jan 2025 10:56:45 +0800 Subject: [PATCH 19/22] Fix ResolveIssue -> FixIssue in steps module (#1200) --- patchwork/steps/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/patchwork/steps/__init__.py b/patchwork/steps/__init__.py index deef1bffe..061170d01 100644 --- a/patchwork/steps/__init__.py +++ b/patchwork/steps/__init__.py @@ -75,6 +75,7 @@ "ExtractModelResponse", "ExtractPackageManagerFile", "FilterBySimilarity", + "FixIssue", "GenerateCodeRepositoryEmbeddings", "GenerateEmbeddings", "LLM", @@ -91,7 +92,6 @@ "ReadPRDiffs", "ReadPRDiffsPB", "ReadPRs", - "ResolveIssue", "ScanDepscan", "ScanSemgrep", "ScanSonar", From a74d35c0c4dd29bd0fa7b8747d838a559ab47c91 Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Tue, 21 Jan 2025 10:57:25 +0800 Subject: [PATCH 20/22] Add Command and SQL steps (#1181) * Add new steps * update init file * change command to shell * bugfixes and changes * lock update * update callsql * make username optional since some dbs take username in connect args instead * fix test and filter url kwargs by none * auto parse dict inputs * bump version * lint and update deps --- patchwork/common/utils/input_parsing.py | 21 + patchwork/common/utils/utils.py | 18 + patchwork/step.py | 46 +- patchwork/steps/CallSQL/CallSQL.py | 57 + patchwork/steps/CallSQL/__init__.py | 0 patchwork/steps/CallSQL/typed.py | 24 + patchwork/steps/CallShell/CallShell.py | 58 + patchwork/steps/CallShell/__init__.py | 0 patchwork/steps/CallShell/typed.py | 19 + patchwork/steps/FixIssue/FixIssue.py | 16 +- patchwork/steps/FixIssue/typed.py | 8 +- patchwork/steps/ModifyCode/ModifyCode.py | 34 +- patchwork/steps/ModifyCode/typed.py | 5 +- patchwork/steps/ModifyCodeOnce/typed.py | 1 + .../steps/PreparePrompt/PreparePrompt.py | 14 +- patchwork/steps/__init__.py | 4 + poetry.lock | 1295 ++++++++++------- pyproject.toml | 35 +- 18 files changed, 1041 insertions(+), 614 deletions(-) create mode 100644 patchwork/steps/CallSQL/CallSQL.py create mode 100644 patchwork/steps/CallSQL/__init__.py create mode 100644 patchwork/steps/CallSQL/typed.py create mode 100644 patchwork/steps/CallShell/CallShell.py create mode 100644 patchwork/steps/CallShell/__init__.py create mode 100644 patchwork/steps/CallShell/typed.py diff --git a/patchwork/common/utils/input_parsing.py b/patchwork/common/utils/input_parsing.py index 0f5318dec..45c2e9047 100644 --- a/patchwork/common/utils/input_parsing.py +++ b/patchwork/common/utils/input_parsing.py @@ -1,5 +1,6 @@ from __future__ import annotations +import json from collections.abc import Iterable, Mapping from typing_extensions import AnyStr, Union @@ -69,3 +70,23 @@ def parse_to_list( continue rv.append(stripped_value) return rv + + +def parse_to_dict(possible_dict, limit=-1): + if possible_dict is None and limit == 0: + return None + + if isinstance(possible_dict, dict): + new_dict = dict() + for k, v in possible_dict.items(): + new_dict[k] = parse_to_dict(v, limit - 1) + return new_dict + elif isinstance(possible_dict, str): + try: + new_dict = json.loads(possible_dict, strict=False) + except json.JSONDecodeError: + return possible_dict + + return parse_to_dict(new_dict, limit - 1) + else: + return possible_dict diff --git a/patchwork/common/utils/utils.py b/patchwork/common/utils/utils.py index bd5e24fc5..bd1d50082 100644 --- a/patchwork/common/utils/utils.py +++ b/patchwork/common/utils/utils.py @@ -2,10 +2,14 @@ import atexit import dataclasses +import random import signal +import string import tempfile +from collections.abc import Mapping from pathlib import Path +import chevron import tiktoken from chardet.universaldetector import UniversalDetector from git import Head, Repo @@ -19,6 +23,20 @@ _NEWLINES = {"\n", "\r\n", "\r"} +def mustache_render(template: str, data: Mapping) -> str: + if len(data.keys()) < 1: + return template + + chevron.render.__globals__["_html_escape"] = lambda x: x + return chevron.render( + template=template, + data=data, + partials_path=None, + partials_ext="".join(random.choices(string.ascii_uppercase + string.digits, k=32)), + partials_dict=dict(), + ) + + def detect_newline(path: str | Path) -> str | None: with open(path, "r", newline="") as f: lines = f.read().splitlines(keepends=True) diff --git a/patchwork/step.py b/patchwork/step.py index ae7157af0..62d81fde7 100644 --- a/patchwork/step.py +++ b/patchwork/step.py @@ -11,7 +11,16 @@ from enum import Enum -from typing_extensions import Any, Dict, List, Optional, Union, is_typeddict +from typing_extensions import ( + Any, + Collection, + Dict, + List, + Optional, + Type, + Union, + is_typeddict, +) from patchwork.logger import logger @@ -45,10 +54,9 @@ def __init__(self, inputs: DataPoint): """ # check if the inputs have the required keys - if self.__input_class is not None: - missing_keys = self.__input_class.__required_keys__.difference(inputs.keys()) - if len(missing_keys) > 0: - raise ValueError(f"Missing required data: {list(missing_keys)}") + missing_keys = self.find_missing_inputs(inputs) + if len(missing_keys) > 0: + raise ValueError(f"Missing required data: {list(missing_keys)}") # store the inputs self.inputs = inputs @@ -64,19 +72,25 @@ def __init__(self, inputs: DataPoint): self.original_run = self.run self.run = self.__managed_run - def __init_subclass__(cls, **kwargs): - input_class = kwargs.get("input_class", None) or getattr(cls, "input_class", None) - output_class = kwargs.get("output_class", None) or getattr(cls, "output_class", None) + def __init_subclass__(cls, input_class: Optional[Type] = None, output_class: Optional[Type] = None, **kwargs): + if cls.__name__ == "PreparePR": + print(1) + input_class = input_class or getattr(cls, "input_class", None) + if input_class is not None and not is_typeddict(input_class): + input_class = None - if input_class is not None and is_typeddict(input_class): - cls.__input_class = input_class - else: - cls.__input_class = None + output_class = output_class or getattr(cls, "output_class", None) + if output_class is not None and not is_typeddict(output_class): + output_class = None - if output_class is not None and is_typeddict(output_class): - cls.__output_class = output_class - else: - cls.__output_class = None + cls._input_class = input_class + cls._output_class = output_class + + @classmethod + def find_missing_inputs(cls, inputs: DataPoint) -> Collection: + if getattr(cls, "_input_class", None) is None: + return [] + return cls._input_class.__required_keys__.difference(inputs.keys()) def __managed_run(self, *args, **kwargs) -> Any: self.debug(self.inputs) diff --git a/patchwork/steps/CallSQL/CallSQL.py b/patchwork/steps/CallSQL/CallSQL.py new file mode 100644 index 000000000..502c76fa0 --- /dev/null +++ b/patchwork/steps/CallSQL/CallSQL.py @@ -0,0 +1,57 @@ +from __future__ import annotations + +from sqlalchemy import URL, create_engine, exc, text + +from patchwork.common.utils.input_parsing import parse_to_dict +from patchwork.common.utils.utils import mustache_render +from patchwork.logger import logger +from patchwork.step import Step, StepStatus +from patchwork.steps.CallSQL.typed import CallSQLInputs, CallSQLOutputs + + +class CallSQL(Step, input_class=CallSQLInputs, output_class=CallSQLOutputs): + def __init__(self, inputs: dict): + super().__init__(inputs) + query_template_data = inputs.get("db_query_template_values", {}) + self.query = mustache_render(inputs["db_query"], query_template_data) + self.__build_engine(inputs) + + def __build_engine(self, inputs: dict): + dialect = inputs["db_dialect"] + driver = inputs.get("db_driver") + dialect_plus_driver = f"{dialect}+{driver}" if driver is not None else dialect + kwargs = dict( + username=inputs.get("db_username"), + host=inputs.get("db_host", "localhost"), + port=inputs.get("db_port", 5432), + password=inputs.get("db_password"), + database=inputs.get("db_database"), + query=parse_to_dict(inputs.get("db_params")), + ) + connection_url = URL.create( + dialect_plus_driver, + **{k: v for k, v in kwargs.items() if v is not None}, + ) + + connect_args = None + if inputs.get("db_driver_args") is not None: + connect_args = parse_to_dict(inputs.get("db_driver_args")) + + self.engine = create_engine(connection_url, connect_args=connect_args) + with self.engine.connect() as conn: + conn.execute(text("SELECT 1")) + return self.engine + + def run(self) -> dict: + try: + rv = [] + with self.engine.begin() as conn: + cursor = conn.execute(text(self.query)) + for row in cursor: + result = row._asdict() + rv.append(result) + logger.info(f"Retrieved {len(rv)} rows!") + return dict(results=rv) + except exc.InvalidRequestError as e: + self.set_status(StepStatus.FAILED, f"`{self.query}` failed with message:\n{e}") + return dict(results=[]) diff --git a/patchwork/steps/CallSQL/__init__.py b/patchwork/steps/CallSQL/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/patchwork/steps/CallSQL/typed.py b/patchwork/steps/CallSQL/typed.py new file mode 100644 index 000000000..91e5684a5 --- /dev/null +++ b/patchwork/steps/CallSQL/typed.py @@ -0,0 +1,24 @@ +from __future__ import annotations + +from typing_extensions import Any, TypedDict + + +class __RequiredCallSQLInputs(TypedDict): + db_dialect: str + db_query: str + + +class CallSQLInputs(__RequiredCallSQLInputs, total=False): + db_driver: str + db_username: str + db_password: str + db_host: str + db_port: int + db_name: str + db_params: dict[str, Any] + db_driver_args: dict[str, Any] + db_query_template_values: dict[str, Any] + + +class CallSQLOutputs(TypedDict): + results: list[dict[str, Any]] diff --git a/patchwork/steps/CallShell/CallShell.py b/patchwork/steps/CallShell/CallShell.py new file mode 100644 index 000000000..d738706e6 --- /dev/null +++ b/patchwork/steps/CallShell/CallShell.py @@ -0,0 +1,58 @@ +from __future__ import annotations + +import shlex +import subprocess +from pathlib import Path + +from patchwork.common.utils.utils import mustache_render +from patchwork.logger import logger +from patchwork.step import Step, StepStatus +from patchwork.steps.CallShell.typed import CallShellInputs, CallShellOutputs + + +class CallShell(Step, input_class=CallShellInputs, output_class=CallShellOutputs): + def __init__(self, inputs: dict): + super().__init__(inputs) + script_template_values = inputs.get("script_template_values", {}) + self.script = mustache_render(inputs["script"], script_template_values) + self.working_dir = inputs.get("working_dir", Path.cwd()) + self.env = self.__parse_env_text(inputs.get("env", "")) + + @staticmethod + def __parse_env_text(env_text: str) -> dict[str, str]: + env_spliter = shlex.shlex(env_text, posix=True) + env_spliter.whitespace_split = True + env_spliter.whitespace += ";" + + env: dict[str, str] = dict() + for env_assign in env_spliter: + env_assign_spliter = shlex.shlex(env_assign, posix=True) + env_assign_spliter.whitespace_split = True + env_assign_spliter.whitespace += "=" + env_parts = list(env_assign_spliter) + if len(env_parts) < 1: + continue + + env_assign_target = env_parts[0] + if len(env_parts) < 2: + logger.error(f"{env_assign_target} is not assigned anything, skipping...") + continue + if len(env_parts) > 2: + logger.error(f"{env_assign_target} has more than 1 assignment, skipping...") + continue + env[env_assign_target] = env_parts[1] + + return env + + def run(self) -> dict: + p = subprocess.run(self.script, shell=True, capture_output=True, text=True, cwd=self.working_dir, env=self.env) + try: + p.check_returncode() + except subprocess.CalledProcessError as e: + self.set_status( + StepStatus.FAILED, + f"Script failed.", + ) + logger.info(f"stdout: \n{p.stdout}") + logger.info(f"stderr:\n{p.stderr}") + return dict(stdout_output=p.stdout, stderr_output=p.stderr) diff --git a/patchwork/steps/CallShell/__init__.py b/patchwork/steps/CallShell/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/patchwork/steps/CallShell/typed.py b/patchwork/steps/CallShell/typed.py new file mode 100644 index 000000000..a8fd050bf --- /dev/null +++ b/patchwork/steps/CallShell/typed.py @@ -0,0 +1,19 @@ +from __future__ import annotations + +from typing_extensions import Annotated, Any, TypedDict + +from patchwork.common.utils.step_typing import StepTypeConfig + + +class __RequiredCallShellInputs(TypedDict): + script: str + + +class CallShellInputs(__RequiredCallShellInputs, total=False): + working_dir: Annotated[str, StepTypeConfig(is_path=True)] + env: str + script_template_values: dict[str, Any] + + +class CallShellOutputs(TypedDict): + stdout_output: str diff --git a/patchwork/steps/FixIssue/FixIssue.py b/patchwork/steps/FixIssue/FixIssue.py index bcb81e7a2..0f7d419af 100644 --- a/patchwork/steps/FixIssue/FixIssue.py +++ b/patchwork/steps/FixIssue/FixIssue.py @@ -1,10 +1,8 @@ -import difflib import re from pathlib import Path from typing import Any, Optional -from git import Repo, InvalidGitRepositoryError -from patchwork.logger import logger +from git import InvalidGitRepositoryError, Repo from openai.types.chat import ChatCompletionMessageParam from patchwork.common.client.llm.aio import AioLlmClient @@ -15,6 +13,7 @@ AnalyzeImplementStrategy, ) from patchwork.common.tools import CodeEditTool, Tool +from patchwork.logger import logger from patchwork.step import Step from patchwork.steps.FixIssue.typed import FixIssueInputs, FixIssueOutputs @@ -100,7 +99,7 @@ def is_stop(self, messages: list[ChatCompletionMessageParam]) -> bool: class FixIssue(Step, input_class=FixIssueInputs, output_class=FixIssueOutputs): def __init__(self, inputs): """Initialize the FixIssue step. - + Args: inputs: Dictionary containing input parameters including: - base_path: Optional path to the repository root @@ -145,12 +144,12 @@ def __init__(self, inputs): def run(self): """Execute the FixIssue step. - + This method: 1. Executes the multi-turn LLM conversation to analyze and fix the issue 2. Tracks file modifications made by the CodeEditTool 3. Generates in-memory diffs for all modified files - + Returns: dict: Dictionary containing list of modified files with their diffs """ @@ -162,8 +161,7 @@ def run(self): if not isinstance(tool, CodeEditTool): continue tool_modified_files = [ - dict(path=str(file_path.relative_to(cwd)), diff="") - for file_path in tool.tool_records["modified_files"] + dict(path=str(file_path.relative_to(cwd)), diff="") for file_path in tool.tool_records["modified_files"] ] modified_files.extend(tool_modified_files) @@ -174,7 +172,7 @@ def run(self): file = modified_file["path"] try: # Try to get the diff using git - diff = self.repo.git.diff('HEAD', file) + diff = self.repo.git.diff("HEAD", file) modified_file["diff"] = diff or "" except Exception as e: # Git-specific errors (untracked files, etc) - keep empty diff diff --git a/patchwork/steps/FixIssue/typed.py b/patchwork/steps/FixIssue/typed.py index 2ead5452f..cd0265f40 100644 --- a/patchwork/steps/FixIssue/typed.py +++ b/patchwork/steps/FixIssue/typed.py @@ -1,4 +1,4 @@ -from typing_extensions import Annotated, Dict, List, TypedDict +from typing_extensions import Annotated, List, TypedDict from patchwork.common.constants import TOKEN_URL from patchwork.common.utils.step_typing import StepTypeConfig @@ -37,19 +37,21 @@ class FixIssueInputs(__FixIssueRequiredInputs, total=False): class ModifiedFile(TypedDict): """Represents a file that has been modified by the FixIssue step. - + Attributes: path: The relative path to the modified file from the repository root diff: A unified diff string showing the changes made to the file. Generated using Python's difflib to compare the original and modified file contents in memory. - + Note: The diff is generated by comparing file contents before and after modifications, without relying on version control systems. """ + path: str diff: str + class FixIssueOutputs(TypedDict): modified_files: List[ModifiedFile] diff --git a/patchwork/steps/ModifyCode/ModifyCode.py b/patchwork/steps/ModifyCode/ModifyCode.py index 5f517c1e4..0252431ef 100644 --- a/patchwork/steps/ModifyCode/ModifyCode.py +++ b/patchwork/steps/ModifyCode/ModifyCode.py @@ -9,7 +9,7 @@ def save_file_contents(file_path: str | Path, content: str) -> None: """Utility function to save content to a file. - + Args: file_path: Path to the file to save content to (str or Path) content: Content to write to the file @@ -47,7 +47,7 @@ def replace_code_in_file( new_code: str, ) -> None: """Replace code in a file at the specified line range. - + Args: file_path: Path to the file to modify (str or Path) start_line: Starting line number (1-based) @@ -109,23 +109,25 @@ def run(self) -> dict: try: # Store original content in memory original_content = file_path.read_text() if file_path.exists() else "" - + # Apply the changes replace_code_in_file(file_path, start_line, end_line, new_code) - + # Read modified content current_content = file_path.read_text() if file_path.exists() else "" - + # Generate unified diff fromfile = f"a/{file_path}" tofile = f"b/{file_path}" - diff = "".join(difflib.unified_diff( - original_content.splitlines(keepends=True), - current_content.splitlines(keepends=True), - fromfile=fromfile, - tofile=tofile - )) - + diff = "".join( + difflib.unified_diff( + original_content.splitlines(keepends=True), + current_content.splitlines(keepends=True), + fromfile=fromfile, + tofile=tofile, + ) + ) + if not diff and new_code: # If no diff but we have new code (new file) diff = f"+++ {file_path}\n{new_code}" except (OSError, IOError) as e: @@ -133,14 +135,10 @@ def run(self) -> dict: # Still proceed with the modification even if diff generation fails replace_code_in_file(file_path, start_line, end_line, new_code) diff = f"+++ {file_path}\n{new_code}" # Use new code as diff on error - + # Create the modified code file dictionary modified_code_file = dict( - path=str(file_path), - start_line=start_line, - end_line=end_line, - diff=diff, - **extracted_response + path=str(file_path), start_line=start_line, end_line=end_line, diff=diff, **extracted_response ) modified_code_files.append(modified_code_file) diff --git a/patchwork/steps/ModifyCode/typed.py b/patchwork/steps/ModifyCode/typed.py index 6f26f79b4..3fcffd82e 100644 --- a/patchwork/steps/ModifyCode/typed.py +++ b/patchwork/steps/ModifyCode/typed.py @@ -12,7 +12,7 @@ class ModifyCodeOutputs(TypedDict): class ModifiedCodeFile(TypedDict, total=False): """Represents a file that has been modified by the ModifyCode step. - + Attributes: path: The path to the modified file start_line: The starting line number of the modification (1-based) @@ -20,12 +20,13 @@ class ModifiedCodeFile(TypedDict, total=False): diff: A unified diff string showing the changes made to the file. Generated using Python's difflib for in-memory comparison of original and modified file contents. - + Note: The diff field is generated using difflib.unified_diff() to compare the original and modified file contents in memory, ensuring efficient and secure diff generation. """ + path: str start_line: int end_line: int diff --git a/patchwork/steps/ModifyCodeOnce/typed.py b/patchwork/steps/ModifyCodeOnce/typed.py index 0333aa59a..2df0c676c 100644 --- a/patchwork/steps/ModifyCodeOnce/typed.py +++ b/patchwork/steps/ModifyCodeOnce/typed.py @@ -15,3 +15,4 @@ class ModifyCodeOnceOutputs(TypedDict): path: str start_line: int end_line: int + diff: str diff --git a/patchwork/steps/PreparePrompt/PreparePrompt.py b/patchwork/steps/PreparePrompt/PreparePrompt.py index a9d78767a..3596ce363 100644 --- a/patchwork/steps/PreparePrompt/PreparePrompt.py +++ b/patchwork/steps/PreparePrompt/PreparePrompt.py @@ -1,13 +1,10 @@ from __future__ import annotations import json -import random -import string from pathlib import Path -import chevron - from patchwork.common.constants import PROMPT_TEMPLATE_FILE_KEY +from patchwork.common.utils.utils import mustache_render from patchwork.logger import logger from patchwork.step import Step, StepStatus @@ -76,7 +73,6 @@ def run(self) -> dict: return dict(prompts=[]) prompts = [] - chevron.render.__globals__["_html_escape"] = lambda string: string for prompt_value in self.prompt_values: dict_value = prompt_value if not isinstance(dict_value, dict): @@ -86,13 +82,7 @@ def run(self) -> dict: for prompt_part in self.prompt_template: prompt_instance = {} for key, value in prompt_part.items(): - new_value = chevron.render( - template=value, - data=dict_value, - partials_path=None, - partials_ext="".join(random.choices(string.ascii_uppercase + string.digits, k=32)), - partials_dict=dict(), - ) + new_value = mustache_render(value, dict_value) prompt_instance[key] = new_value prompt.append(prompt_instance) prompts.append(prompt) diff --git a/patchwork/steps/__init__.py b/patchwork/steps/__init__.py index 061170d01..fe690655f 100644 --- a/patchwork/steps/__init__.py +++ b/patchwork/steps/__init__.py @@ -3,6 +3,8 @@ from patchwork.steps.CallAPI.CallAPI import CallAPI from patchwork.steps.CallCode2Prompt.CallCode2Prompt import CallCode2Prompt from patchwork.steps.CallLLM.CallLLM import CallLLM +from patchwork.steps.CallShell.CallShell import CallShell +from patchwork.steps.CallSQL.CallSQL import CallSQL from patchwork.steps.Combine.Combine import Combine from patchwork.steps.CommitChanges.CommitChanges import CommitChanges from patchwork.steps.CreateIssue.CreateIssue import CreateIssue @@ -61,6 +63,8 @@ "AnalyzeImpact", "CallAPI", "CallCode2Prompt", + "CallShell", + "CallSQL", "CallLLM", "Combine", "CommitChanges", diff --git a/poetry.lock b/poetry.lock index dda1bfe67..afcb0b86c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -476,13 +476,13 @@ virtualenv = ["virtualenv (>=20.0.35)"] [[package]] name = "cachecontrol" -version = "0.14.1" +version = "0.14.2" description = "httplib2 caching for requests" optional = false python-versions = ">=3.8" files = [ - {file = "cachecontrol-0.14.1-py3-none-any.whl", hash = "sha256:65e3abd62b06382ce3894df60dde9e0deb92aeb734724f68fa4f3b91e97206b9"}, - {file = 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and platform_machine == \"x86_64\""} +nvidia-curand-cu12 = {version = "10.3.5.147", markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""} +nvidia-cusolver-cu12 = {version = "11.6.1.9", markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""} +nvidia-cusparse-cu12 = {version = "12.3.1.170", markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""} +nvidia-nccl-cu12 = {version = "2.21.5", markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""} +nvidia-nvjitlink-cu12 = {version = "12.4.127", markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""} +nvidia-nvtx-cu12 = {version = "12.4.127", markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""} +setuptools = {version = "*", markers = "python_version >= \"3.12\""} +sympy = {version = "1.13.1", markers = "python_version >= \"3.9\""} +triton = {version = "3.1.0", markers = "platform_system == \"Linux\" and 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"d7b707a25412d05489928500349e867151fda0a99889d46ff2e2b4a079bb9d1e" +content-hash = "5916c662b332b6965befab7f6b97ce7f8f31c09e90333e18b0591be7f9f7add3" diff --git a/pyproject.toml b/pyproject.toml index 9d5da77d1..fa687fe0f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.91" +version = "0.0.92" description = "" authors = ["patched.codes"] license = "AGPL" @@ -34,6 +34,7 @@ azure-devops = "~7.1.0b4" gitpython = "~3.1.40" pydantic = "~2.8.2" libcst = "~1.1.0" +sqlalchemy = "~2.0.36" patched-code2prompt = "~0.9.0.dev1" pyyaml = "^6.0.1" packageurl-python = "~0.15.0" @@ -51,35 +52,35 @@ json-repair = "~0.30.0" # pinning transitive dependencies tree-sitter = "~0.21.3" numpy = [ - { version = "^1.26", python = "^3.12", optional = true}, - { version = "^1.24", python = "^3.9, <=3.11", optional = true} + { version = "^1.26", python = "^3.12", optional = true }, + { version = "^1.24", python = "^3.9, <=3.11", optional = true } ] pandas = [ - { version = "^2.1.4", python = "^3.12", optional = true}, - { version = "^2.0.3", python = "3.9, <=3.11", optional = true} + { version = "^2.1.4", python = "^3.12", optional = true }, + { version = "^2.0.3", python = "3.9, <=3.11", optional = true } ] scipy = [ - { version = "^1.7.3", python = "^3.12", optional = true}, - { version = "^1.6.1", python = "3.9, <=3.11", optional = true} + { version = "^1.7.3", python = "^3.12", optional = true }, + { version = "^1.6.1", python = "3.9, <=3.11", optional = true } ] # extras # security -semgrep = {version = "^1.51.0", optional = true} -owasp-depscan = {version = "5.2.15", optional = true } +semgrep = { version = "^1.51.0", optional = true } +owasp-depscan = { version = "5.2.15", optional = true } # rag -chromadb = {version = "~0.4.24", optional = true } -sentence-transformers = {version = "~2.7.0", optional = true } +chromadb = { version = "~0.4.24", optional = true } +sentence-transformers = { version = "~2.7.0", optional = true } # rag - pinning transitive dependencies opentelemetry-exporter-otlp-proto-grpc = { version = "1.25.0", optional = true } onnxruntime = { version = "1.19.2", optional = true } -torch = {version = "~2.4.1", optional = true } -orjson = {version = "~3.9.15", optional = true } +torch = { version = "~2.5.1", optional = true } +orjson = { version = "~3.9.15", optional = true } # notifications -slack-sdk = {version = "~3.28.0", optional = true } +slack-sdk = { version = "~3.28.0", optional = true } [tool.poetry.extras] security = ["semgrep", "owasp-depscan"] @@ -122,9 +123,9 @@ TEST_PATH.default = "tests" [tool.poe.tasks] #mypy = "mypy ${PROJ_PATH}" lint = [ - {cmd = "autoflake --recursive ${PROJ_PATH} ${TEST_PATH}"}, - {cmd = "isort ${PROJ_PATH} ${TEST_PATH}"}, - {cmd = "black ${PROJ_PATH} ${TEST_PATH}"} + { cmd = "autoflake --recursive ${PROJ_PATH} ${TEST_PATH}" }, + { cmd = "isort ${PROJ_PATH} ${TEST_PATH}" }, + { cmd = "black ${PROJ_PATH} ${TEST_PATH}" } ] [tool.black] From 3b2ef626a8fbc364d64622488d32104f7541437b Mon Sep 17 00:00:00 2001 From: TY <42710806+CTY-git@users.noreply.github.com> Date: Tue, 21 Jan 2025 14:45:44 +0800 Subject: [PATCH 21/22] Run DB query as is (#1207) * run db query as is and do not compile by sqlalchemy * revert test select * pass current env to callshell --- patchwork/steps/CallSQL/CallSQL.py | 2 +- patchwork/steps/CallShell/CallShell.py | 4 +++- pyproject.toml | 2 +- 3 files changed, 5 insertions(+), 3 deletions(-) diff --git a/patchwork/steps/CallSQL/CallSQL.py b/patchwork/steps/CallSQL/CallSQL.py index 502c76fa0..dca37c5d4 100644 --- a/patchwork/steps/CallSQL/CallSQL.py +++ b/patchwork/steps/CallSQL/CallSQL.py @@ -46,7 +46,7 @@ def run(self) -> dict: try: rv = [] with self.engine.begin() as conn: - cursor = conn.execute(text(self.query)) + cursor = conn.exec_driver_sql(self.query) for row in cursor: result = row._asdict() rv.append(result) diff --git a/patchwork/steps/CallShell/CallShell.py b/patchwork/steps/CallShell/CallShell.py index d738706e6..f5f51d52a 100644 --- a/patchwork/steps/CallShell/CallShell.py +++ b/patchwork/steps/CallShell/CallShell.py @@ -1,5 +1,6 @@ from __future__ import annotations +import os import shlex import subprocess from pathlib import Path @@ -7,6 +8,7 @@ from patchwork.common.utils.utils import mustache_render from patchwork.logger import logger from patchwork.step import Step, StepStatus +from patchwork.steps import CallSQL from patchwork.steps.CallShell.typed import CallShellInputs, CallShellOutputs @@ -24,7 +26,7 @@ def __parse_env_text(env_text: str) -> dict[str, str]: env_spliter.whitespace_split = True env_spliter.whitespace += ";" - env: dict[str, str] = dict() + env: dict[str, str] = os.environ.copy() for env_assign in env_spliter: env_assign_spliter = shlex.shlex(env_assign, posix=True) env_assign_spliter.whitespace_split = True diff --git a/pyproject.toml b/pyproject.toml index fa687fe0f..284311602 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.92" +version = "0.0.93" description = "" authors = ["patched.codes"] license = "AGPL" From 031849e7cff8625aa35d0a1379d3cec68d86b979 Mon Sep 17 00:00:00 2001 From: AR <17565234+whoisarpit@users.noreply.github.com> Date: Tue, 21 Jan 2025 17:39:32 +0800 Subject: [PATCH 22/22] Adding --no-verify to git commit to ensure precommit hooks don't cause issues (#1216) * Adding --no-verify to git commit to ensure precommit hooks don't cause issues * Bump project version to 0.0.94 --- patchwork/steps/CommitChanges/CommitChanges.py | 1 + pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/patchwork/steps/CommitChanges/CommitChanges.py b/patchwork/steps/CommitChanges/CommitChanges.py index 3cd71c617..f4c63c40c 100644 --- a/patchwork/steps/CommitChanges/CommitChanges.py +++ b/patchwork/steps/CommitChanges/CommitChanges.py @@ -96,6 +96,7 @@ def commit_with_msg(repo: Repo, msg: str): with ephemeral.context(): repo.git.commit( + "--no-verify", "--author", "patched.codes[bot]<298395+patched.codes[bot]@users.noreply.github.com>", "-m", diff --git a/pyproject.toml b/pyproject.toml index 284311602..c46b86bf1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "patchwork-cli" -version = "0.0.93" +version = "0.0.94" description = "" authors = ["patched.codes"] license = "AGPL"