From c1bd0f2831c5f407382f75edab9330336390d4ec Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Thu, 11 Jan 2024 12:07:07 -0600 Subject: [PATCH 1/3] comment unused code --- src/breaks.cpp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/breaks.cpp b/src/breaks.cpp index f2db2457..16c1d749 100644 --- a/src/breaks.cpp +++ b/src/breaks.cpp @@ -244,11 +244,11 @@ namespace smoothxg { } // if there is, set the cut length to some fraction of it std::vector lengths; - double max_z = 0; + //double max_z = 0; for (auto& repeat : repeats) { if (repeat.length > 0) { lengths.push_back(repeat.length); - max_z = std::max(repeat.z_score, max_z); + //max_z = std::max(repeat.z_score, max_z); } } found_repeat = !lengths.empty(); From 25c19eaa85fce61ee11849045d32f1820103ba98 Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Thu, 11 Jan 2024 12:18:54 -0600 Subject: [PATCH 2/3] update abPOA --- deps/abPOA | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/deps/abPOA b/deps/abPOA index d2e01869..2718d1c7 160000 --- a/deps/abPOA +++ b/deps/abPOA @@ -1 +1 @@ -Subproject commit d2e0186963b5d8418dcc86f4154a4703fbce94dd +Subproject commit 2718d1c7a020efac0a5c93cf1083e1de58bde17b From 4b27ce4e06e8327b202ac26ab9d29c6380baec0e Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Thu, 11 Jan 2024 12:29:18 -0600 Subject: [PATCH 3/3] update spoa --- deps/spoa | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/deps/spoa b/deps/spoa index 981ad592..73f7a259 160000 --- a/deps/spoa +++ b/deps/spoa @@ -1 +1 @@ -Subproject commit 981ad5921c989948b37e821f6f47e8e23873cf28 +Subproject commit 73f7a259b3598d629e883f8b6cf64288c84c695d