diff --git a/partition-before-pggb b/partition-before-pggb index 9aaae37..50e8d93 100755 --- a/partition-before-pggb +++ b/partition-before-pggb @@ -501,7 +501,7 @@ if [[ "$input_paf" == false ]]; then $merge_cmd \ "$input_fasta" \ --lower-triangular \ - --hg-filter-ani-diff "$hg_filter_ani_diff" + --hg-filter-ani-diff $hg_filter_ani_diff --approx-map \ > "$prefix_mappings_paf".mappings.$mapper.paf) 2> >(tee -a "$log_file") fi