From 02daa2f94f00e5693083489f0fbf12be63a21e59 Mon Sep 17 00:00:00 2001 From: Sina Booeshaghi Date: Sun, 8 Sep 2024 19:13:37 -0700 Subject: [PATCH] updating 10xv2/10xv3 template and adding seq primer to docs --- examples/specs/template/10xv2-template.yaml | 3 ++- examples/specs/template/10xv3-template.yaml | 5 +++-- myst.yml | 1 + 3 files changed, 6 insertions(+), 3 deletions(-) diff --git a/examples/specs/template/10xv2-template.yaml b/examples/specs/template/10xv2-template.yaml index aeeb0fe..6d4a952 100644 --- a/examples/specs/template/10xv2-template.yaml +++ b/examples/specs/template/10xv2-template.yaml @@ -78,13 +78,14 @@ library_spec: min_len: 16 max_len: 16 onlist: !Onlist - location: remote + file_id: 737K-august-2016.txt.gz filename: 737K-august-2016.txt.gz filetype: txt filesize: 12533759 url: https://github.com/pachterlab/qcbc/raw/main/tests/10xRNAv2/737K-august-2016.txt.gz urltype: http md5: 72aa64fd865bcda142c47d0da8370168 + location: remote regions: null - !Region parent_id: rna diff --git a/examples/specs/template/10xv3-template.yaml b/examples/specs/template/10xv3-template.yaml index 5d54b3d..dde19f5 100644 --- a/examples/specs/template/10xv3-template.yaml +++ b/examples/specs/template/10xv3-template.yaml @@ -78,13 +78,14 @@ library_spec: min_len: 16 max_len: 16 onlist: !Onlist - location: remote + file_id: 3M-february-2018.txt.gz filename: 3M-february-2018.txt.gz filetype: txt filesize: 115512960 url: https://github.com/pachterlab/qcbc/raw/main/tests/10xRNAv3/3M-february-2018.txt.gz urltype: http md5: 3d36d0a4021fd292b265e2b5e72aaaf3 + location: remote regions: null - !Region parent_id: rna @@ -104,7 +105,7 @@ library_spec: name: cdna sequence_type: random sequence: XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX - min_len: 1 + min_len: 150 max_len: 150 onlist: null regions: null diff --git a/myst.yml b/myst.yml index f04d633..ae45cd8 100644 --- a/myst.yml +++ b/myst.yml @@ -22,6 +22,7 @@ project: children: - file: docs/TUTORIAL.md - file: docs/USING_SEQSPEC.ipynb + - file: docs/SEQ_PRIMER.md - file: docs/CONTRIBUTING.md - file: docs/CHANGELOG.md