multisample handling

[ynanli]

Hi,

Thanks for developing this nice software.

I am working with a SpatialExperiement object containing muiltiple samples with use.spatial = TRUE. I am curious how the function handles the data with multiple samples, as I noticed there are no arguments for sample id input. Does it mean that the default the 30 neighbors detected based on the spatial coordinates might come from different samples and thus would be incorrect in this case? (As the coordinates are in similar scales across samples in my dataset)

Many thanks!

concordexR/R/concordex.R

Lines 182 to 184 in c0ff58d

	if (use.spatial) {
	calculateConcordex(spatialCoords(x), labels=labels, ...)
	} else {

[kayla-jackson]

Hi @ynanli,

You are right that concordexR doesn't currently handle multiple samples. I'm working on adding this for the development version but will update the documentation to make this clear in the meantime.