From 9473015b9728314b7ea6076c4c78c8e0fc55783f Mon Sep 17 00:00:00 2001 From: Kayla Jackson Date: Sun, 8 Sep 2024 15:44:14 -0700 Subject: [PATCH] Minor updates to argument naming --- R/concordex-internals.R | 4 ++-- README.Rmd | 16 ++++++++-------- 2 files changed, 10 insertions(+), 10 deletions(-) diff --git a/R/concordex-internals.R b/R/concordex-internals.R index 43ea5d7..b451853 100644 --- a/R/concordex-internals.R +++ b/R/concordex-internals.R @@ -60,10 +60,10 @@ x, labels, ..., - n_neighbors=30, - compute_similarity=FALSE, BLUSPARAM, BNINDEX, + n_neighbors=30, + compute_similarity=FALSE, BNPARAM=KmknnParam(), BPPARAM=SerialParam(), precomputed=FALSE, diff --git a/README.Rmd b/README.Rmd index 1017ee3..eede494 100644 --- a/README.Rmd +++ b/README.Rmd @@ -91,14 +91,14 @@ recent bioRxiv preprint > Jackson, K.; Booeshaghi, A. S.; Gálvez-Merchán, Á.; Moses, L.; Chari, T.; Pachter, L. Quantitative assessment of single-cell RNA-seq clustering with CONCORDEX. bioRxiv (Cold Spring Harbor Laboratory) 2023. https://doi.org/10.1101/2023.06.28.546949. @article {Jackson2023.06.28.546949, - author = {Jackson, Kayla C. and Booeshaghi, A. Sina and G{\'a}lvez-Merch{\'a}n, {\'A}ngel and Moses, Lambda and Chari, Tara and Kim, Alexandra and Pachter, Lior}, - title = {Identification of spatial homogeneous regions in tissues with concordex}, - year = {2024}, - doi = {10.1101/2023.06.28.546949}, - publisher = {Cold Spring Harbor Laboratory}, - URL = {https://www.biorxiv.org/content/early/2024/07/18/2023.06.28.546949}, - journal = {bioRxiv} -} + author = {Jackson, Kayla C. and Booeshaghi, A. Sina and G{\'a}lvez-Merch{\'a}n, {\'A}ngel and Moses, Lambda and Chari, Tara and Kim, Alexandra and Pachter, Lior}, + title = {Identification of spatial homogeneous regions in tissues with concordex}, + year = {2024}, + doi = {10.1101/2023.06.28.546949}, + publisher = {Cold Spring Harbor Laboratory}, + URL = {https://www.biorxiv.org/content/early/2024/07/18/2023.06.28.546949}, + journal = {bioRxiv} + } ## Maintainer