Output not recieved in mappingMutationCalling_pipeline

[pinunQ]

Hello,

Thank you so much for sharing your code.

I was trying to reiterate your code on my data from GTEx but I am coming on some problems for a while now.

`localrules directive specifies rules that are not present in the Snakefile:
organize_tissues

Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 6
Rules claiming more threads will be scaled down.
Job stats:
job count min threads max threads

---

all 1 1 1
total 1 1 1

Select jobs to execute...

[Wed Jul 6 18:15:53 2022]
localrule all:
jobid: 0
reason: Rules with neither input nor output files are always executed.
resources: tmpdir=/tmp

[Wed Jul 6 18:15:53 2022]
Finished job 0.
1 of 1 steps (100%) done
Complete log: .snakemake/log/2022-07-06T181548.389176.snakemake.log`

However, there is no error from this but there is no output at the same time as well.
Please guide me.