config.yaml

execution:
  parallel: True
  njobs: -2

pipeline:
  vaccinations:
    get:
      countries:
      skip_countries:
        - Gabon
        - Morocco # Government data doesn't differentiate 1- and 2-dose vaccines so we use WHO instead
        - North Macedonia
        #- South Africa
        - africacdc
        - Guatemala
        # - Ukraine # server down
        - Saint Lucia # switched to paho. previous source not reporting boosters.
        # - Faeroe Islands
        # - Austria  # Moved to ECDC
        # - Denmark  # Moved to ECDC
        # - Colombia  # Moved to PAHO
        # - Vietnam  # Moved to WHO
        - austria_old # using ECDC
        - austria # using ECDC
        - Sri Lanka # Moved to WHO
        - Ukraine # Moved to WHO
        - Portugal # Temporary moved to ECDC
        - Myanmar # Moved to WHO
        - Costa Rica # moved to WHO
        - Philippines # moved to WHO
        - Indonesia # Moved to WHO
        - Qatar # Moved to WHO
        - United Arab Emirates # Moved to WHO
        - Netherlands # Temporary disabled (https://github.com/owid/covid-19-data/issues/2694), Moved to ECDC
        - Nepal # Moved to WHO
        - Vietnam # Moved to WHO
        - Iran # Moved to WHO
        - Azerbaijan # Moved to WHO
        - Antigua Barbuda # Moved to WHO
        - Moldova # Moved to WHO
        - Barbados # Moved to WHO
        # - Australia # Moved to WHO
        - Ecuador # Moved to PAHO
        # - South Korea  # Moved to WHO
        - Bahrain
        - Pakistan # Moved to WHO
        - South Africa # Moved to WHO
        # - Japan # Moved to WHO
        - Denmark # Moved to ECDC

        # No longer publishing data or page unavailable
        - Guernsey # No longer publishing data
        - Greenland # No longer publishing data
        - Kosovo # Page not available
        - Curacao # Moved to PAHO
        - Australia # Moved to WHO
        - Macao # Stop reporting bc website returns 403 error
        - South Korea  # Moved to WHO
        - Chile  # Moved to WHO
        - Kazakhstan  # Moved to WHO

        # No reliable sources
        - Saudi Arabia
        - Kyrgyzstan
        - Switzerland
        - Turkey # Blocked external IP
        - Japan  # Too complex to maintain
        - Taiwan # Too complex to maintain
    process:
      skip_complete:
        - Pitcairn
      skip_monotonic_check:
      skip_anomaly_check:
        Algeria:
          - date: 2022-02-17
            metrics: total_boosters
        Australia:
          - date: 2021-05-23
            metrics: people_vaccinated
        Bahrain:
          - date: 2021-03-06
            metrics: total_vaccinations
        Bolivia:
          - date: 2021-03-06
            metrics: people_vaccinated
        Brazil:
          - date: 2021-01-21
            metrics:
              - total_vaccinations
              - people_vaccinated
        Bulgaria:
          - date: 2021-12-14
            metrics: total_boosters
        Luxembourg:
          - date: 2023-06-11
            metrics: people_fully_vaccinated
        Nigeria:
          - date: 2021-06-15
            metrics: people_fully_vaccinated
        United States:
          - date: 2020-12-16
            metrics: people_vaccinated
    generate:
    export:

  testing:
    get:
      countries:
      skip_countries:
        - Kazakhstan
        - Ukraine
        - Andorra
        #- Jordan
        - Benin
        - Vanuatu #source no longer updated
        - Guatemala #source no longer updated
        - Indonesia #source no longer updated
        - Gibraltar #source no longer updated
        - Philippines #now manual
    process:
    generate:
    export:

  hospitalizations:
    generate:
      countries:
      skip_countries:
        # - South Africa
        # - France
        # - Italy
        # - Israel
        # - Spain
        # - Argentina