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    • orca-ui

      Public
      TypeScript
      MIT License
      00104Updated Oct 31, 2024Oct 31, 2024
    • orcabus

      Public
       🐋 UMCCR Pipeline & Workflow Orchestration
      Python
      04433Updated Oct 31, 2024Oct 31, 2024
    • AWS stack to run Nextflow pipelines on Batch using shared resources
      Shell
      0021Updated Oct 30, 2024Oct 30, 2024
    • cwl-ica

      Public
      A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
      Common Workflow Language
      MIT License
      2842Updated Oct 30, 2024Oct 30, 2024
    • Infrastructure as Code at UMCCR
      Python
      810137Updated Oct 30, 2024Oct 30, 2024
    • htsget-rs

      Public
      A server implementation of the htsget protocol for bioinformatics in Rust
      Rust
      MIT License
      939195Updated Oct 29, 2024Oct 29, 2024
    • CWL Novice Tutorial
      HTML
      Other
      0000Updated Oct 29, 2024Oct 29, 2024
    • RNAsum

      Public
      Pipeline for generating RNAseq-based cancer patient reports
      R
      Other
      47160Updated Oct 28, 2024Oct 28, 2024
    • rportal

      Public
      🔮 R functionality for UMCCR Data Portal
      R
      Other
      0010Updated Oct 28, 2024Oct 28, 2024
    • UMCCR Data Portal API Backend in cloud native serverless
      Python
      01190Updated Oct 28, 2024Oct 28, 2024
    • UMCCR Data Portal Frontend
      TypeScript
      1160Updated Oct 28, 2024Oct 28, 2024
    • JavaScript
      0021Updated Oct 28, 2024Oct 28, 2024
    • dracarys

      Public
      🐲 DRAGEN workflow tidying 🔥
      R
      Other
      00241Updated Oct 28, 2024Oct 28, 2024
    • pcgr

      Public
      Personal Cancer Genome Reporter (PCGR)
      R
      MIT License
      48000Updated Oct 24, 2024Oct 24, 2024
    • 🔆 Interacting with Illumina Connected Analytics (ICA) API
      EJS
      2311Updated Oct 19, 2024Oct 19, 2024
    • libumccr

      Public
      🐍 UMCCR Reusable Python modules
      Python
      MIT License
      0040Updated Oct 16, 2024Oct 16, 2024
    • holmes

      Public
      BAM fingerprint stack
      TypeScript
      MIT License
      0331Updated Oct 9, 2024Oct 9, 2024
    • Rust implementation for the Crypt4GH encryption format
      Rust
      Apache License 2.0
      2001Updated Oct 8, 2024Oct 8, 2024
    • Computes tallies of occurrence of variation across laboratories
      Python
      MIT License
      0000Updated Oct 4, 2024Oct 4, 2024
    • HTML
      0000Updated Oct 1, 2024Oct 1, 2024
    • A Steps orchestration for copying large volumes of S3 objects
      TypeScript
      MIT License
      0020Updated Sep 24, 2024Sep 24, 2024
    • TypeScript
      0050Updated Sep 24, 2024Sep 24, 2024
    • Python
      0020Updated Sep 16, 2024Sep 16, 2024
    • A miscellaneous set of UMCCR dockerfiles that don't quite go anywhere else.
      Dockerfile
      MIT License
      0310Updated Sep 2, 2024Sep 2, 2024
    • wrapica

      Public
      A suite of secondary / tertiary functions for running ICA API calls
      Python
      GNU General Public License v3.0
      0281Updated Aug 30, 2024Aug 30, 2024
    • libica

      Public
      🐍 Python SDK for Illumina Connected Analytics (ICA) 🐉
      Python
      MIT License
      4630Updated Aug 24, 2024Aug 24, 2024
    • gpgr

      Public
      📚 Genomics Platform Group Reporter
      R
      Other
      1800Updated Aug 20, 2024Aug 20, 2024
    • R
      0010Updated Aug 19, 2024Aug 19, 2024
    • A set of additional subcommands for icav2
      Python
      MIT License
      02190Updated Aug 5, 2024Aug 5, 2024
    • The CLI used for creating/syncing CWL workflows from GitHub to ICAv1
      Python
      MIT License
      01100Updated Aug 3, 2024Aug 3, 2024