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    25 repositories

    • Vina-GPU-2.1

      Public
      Vina-GPU 2.1, an improved docking toolkit for faster speed and higher accuracy on the virtual screening
      C++
      •
      Apache License 2.0
      •24•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • seoklab.github.io

      Public
      A modern seoklab homepage
      SCSS
      •
      Creative Commons Attribution Share Alike 4.0 International
      •940•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • nurikit

      Public
      *The* fundamental software platform for chem- and bio-informatics
      C++
      •
      Apache License 2.0
      •8•5•11•0•Updated Jan 20, 2025Jan 20, 2025

    • boltz

      Public
      Official repository for the Boltz-1 biomolecular interaction model
      Python
      •
      MIT License
      •194•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • Merizo

      Public
      Fast and accurate protein domain segmentation using Invariant Point Attention
      Python
      •
      GNU General Public License v3.0
      •7•0•0•1•Updated Jan 2, 2025Jan 2, 2025

    • shared-hooks

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Dec 30, 2024Dec 30, 2024

    • colab_gd_dl

      Public
      Python
      •9•0•0•0•Updated Dec 30, 2024Dec 30, 2024

    • galaxydock_dl

      Public
      galaxydock_dl for public
      Fortran
      •
      MIT License
      •0•3•0•0•Updated Dec 22, 2024Dec 22, 2024

    • chai-lab

      Public
      Chai-1, SOTA model for biomolecular structure prediction
      Python
      •
      Apache License 2.0
      •195•0•1•1•Updated Dec 19, 2024Dec 19, 2024

    • alphafold3

      Public
      AlphaFold 3 inference pipeline.
      Python
      •
      Other
      •711•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • alphafold

      Public
      A seoklab-flavored version of AlphaFold2.
      Python
      •
      Apache License 2.0
      •2.3k•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • CSearch

      Public
      CSearch: Chemical Space Search via Virtual Synthesis and Global Optimization
      global-optimizationcomputer-aided-drug-designchemical-space-searchvirtual-synthesis
      Python
      •
      MIT License
      •1•4•0•0•Updated Oct 18, 2024Oct 18, 2024

    • openfold

      Public
      Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
      Python
      •
      Apache License 2.0
      •559•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • ComMat

      Public
      Community-based Deep Learning and Antibody H3 Loop Modeling
      Python
      •
      MIT License
      •0•2•1•0•Updated Aug 28, 2024Aug 28, 2024

    • Uni-Fold

      Public
      An open-source platform for developing protein models beyond AlphaFold.
      Python
      •
      Apache License 2.0
      •75•0•0•0•Updated May 28, 2024May 28, 2024

    • RoseTTAFold-All-Atom

      Public
      Python
      •
      Other
      •122•1•0•0•Updated Apr 4, 2024Apr 4, 2024

    • ldld

      Public
      Learning Deep Learning Deeply
      tutorialdeep-learningjupyternotebook
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Jan 9, 2024Jan 9, 2024

    • GalaxyWater-CNN

      Public
      3D-CNN based water position prediction method
      Python
      •
      Apache License 2.0
      •2•11•3•0•Updated Nov 20, 2023Nov 20, 2023

    • Public-practice

      Public
      Public Files for the lecture and practice etc
      Shell
      •1•1•0•0•Updated Oct 24, 2023Oct 24, 2023

    • OmegaFold

      Public
      OmegaFold Release Code
      Python
      •
      Apache License 2.0
      •80•0•0•0•Updated Sep 23, 2022Sep 23, 2022

    • csblast

      Public
      Context-specific mutation probabilities for protein sequencing searching.
      C++
      •
      Other
      •3•0•0•0•Updated Aug 3, 2022Aug 3, 2022

    • ncbi-blast-legacy

      Public
      legacy blast
      C
      •
      Other
      •3•0•0•0•Updated Aug 1, 2022Aug 1, 2022

    • .github

      Public
      Default community health files for seoklab
      health
      0•0•0•0•Updated Apr 9, 2022Apr 9, 2022

    • GPCR_binding_cavity_volume_calculation

      Public archive
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • GalaxyPepDock

      Public
      Protein-peptide docking based on interaction similarity
      Shell
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Feb 6, 2018Feb 6, 2018