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    17 repositories

    • scanreader

      Public
      Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
      Python
      •
      MIT License
      •14•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • NEURD

      Public
      NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
      Jupyter Notebook
      •4•9•2•1•Updated Jan 7, 2025Jan 7, 2025

    • datasci_tools

      Public
      Repo that has generic modules for basic python and datascience functionality
      Python
      •1•0•0•1•Updated Dec 20, 2024Dec 20, 2024

    • neuron_morphology_tools

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • mesh_tools

      Public
      Python
      •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

    • wiener_deconv

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • 3D-printing-models

      Public
      collections of 3D printing models for neuroscience
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • machine_learning_tools

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • code_structure_tools

      Public
      tools for efficiently structuring code in function programming and object oriented programing
      Jupyter Notebook
      •0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • pytorch_tools

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • graph_tools

      Public
      Tools for analyzing graphs and machine learning over graph data
      Jupyter Notebook
      •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • tamarind

      Public
      manage multiple ephemeral neo4j containers
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • dotmotif

      Public
      Find graph motifs using intuitive notation
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Sep 18, 2023Sep 18, 2023

    • odor_meso

      Public
      Odor experiment pipeline for meso
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •3•0•0•0•Updated Jul 2, 2021Jul 2, 2021

    • odor-meso-gui

      Public
      CSS
      •2•0•0•0•Updated Mar 22, 2021Mar 22, 2021

    • datajoint-dashboard

      Public
      Developing tool to build a Plotly Dash app for a DataJoint pipeline
      Python
      •6•0•0•0•Updated Mar 17, 2021Mar 17, 2021

    • dbbak

      Public
      MySQL database backup scripting
      Shell
      •
      MIT License
      •5•0•0•0•Updated Oct 19, 2020Oct 19, 2020