PermissionError during poetry self update

[azatoth]

I did a poetry self update recently, and I was greeted by following:

Output of poetry self update

$ poetry self update
Updating Poetry version ...

Using version ^1.8.3 for poetry

Updating dependencies
Resolving dependencies... (2.2s)

Package operations: 42 installs, 14 updates, 0 removals

  - Updating cffi (1.16.0 -> 1.17.0)
  - Installing mdurl (0.1.2)
  - Updating cryptography (42.0.8 -> 43.0.0)
  - Updating idna (3.7 -> 3.8)
  - Installing markdown-it-py (3.0.0)
  - Updating more-itertools (10.3.0 -> 10.4.0)
  - Downgrading numpy (2.0.0 -> 1.26.4)
  - Updating zipp (3.19.2 -> 3.20.1)
  - Installing absl-py (2.1.0)
  - Installing grpcio (1.66.0)
  - Installing h5py (3.11.0)
  - Updating importlib-metadata (8.0.0 -> 8.4.0)
  - Installing markdown (3.7)
  - Installing ml-dtypes (0.4.0)
  - Installing namex (0.0.8)
  - Installing optree (0.12.1)
  - Installing protobuf (4.25.4)
  - Updating rapidfuzz (3.9.4 -> 3.9.6)
  - Updating rich (12.6.0 -> 13.8.0)
  - Updating setuptools (59.6.0 -> 73.0.1)
  - Installing tensorboard-data-server (0.7.2)
  - Installing werkzeug (3.0.4)
  - Installing wheel (0.44.0)
  - Installing astunparse (1.6.3)
  - Installing contourpy (1.2.1)
  - Installing cycler (0.12.1)
  - Installing flatbuffers (24.3.25)
  - Installing fonttools (4.53.1)
  - Installing gast (0.6.0)
  - Installing google-pasta (0.2.0)
  - Installing greenlet (3.0.3): Failed

  PermissionError

  [Errno 13] Permission denied: '/usr/include/python3.10/greenlet'

  at /usr/lib/python3.10/pathlib.py:1175 in mkdir
      1171│         """
      1172│         Create a new directory at this given path.
      1173│         """
      1174│         try:
    → 1175│             self._accessor.mkdir(self, mode)
      1176│         except FileNotFoundError:
      1177│             if not parents or self.parent == self:
      1178│                 raise
      1179│             self.parent.mkdir(parents=True, exist_ok=True)

Cannot install greenlet.

  - Installing joblib (1.4.2)
  - Installing keras (3.5.0)
  - Installing kiwisolver (1.4.5)
  - Installing libclang (18.1.1)
  - Installing opt-einsum (3.3.0)
  - Updating pillow (9.5.0 -> 10.4.0)
  - Installing pyparsing (3.1.4)
  - Updating pytz (2021.3 -> 2024.1)
  - Installing scipy (1.14.1)
  - Installing tensorboard (2.17.1)
  - Installing tensorflow-io-gcs-filesystem (0.37.1)
  - Installing termcolor (2.4.0)
  - Installing threadpoolctl (3.5.0)
  - Updating tomlkit (0.13.0 -> 0.13.2)
  - Installing tzdata (2024.1)
  - Installing wrapt (1.16.0)

Any ideas what's going on here and what I might have done to cause this?

I later tried to install python-greenlet-dev, but it then only changed to following:

Output from poetry self update

  - Installing greenlet (3.0.3): Failed

  PermissionError

  [Errno 13] Permission denied: '/usr/include/python3.10/greenlet/greenlet.h'

  at /usr/lib/python3.10/pathlib.py:1119 in open
      1115│         the built-in open() function does.
      1116│         """
      1117│         if "b" not in mode:
      1118│             encoding = io.text_encoding(encoding)
    → 1119│         return self._accessor.open(self, mode, buffering, encoding, errors,
      1120│                                    newline)
      1121│ 
      1122│     def read_bytes(self):
      1123│         """

Cannot install greenlet.

[Secrus]

How did you install Poetry? There should be no issues with greenlet since we don't depend on it. It looks like you have Poetry installed in some general purpose environment, which you shouldn't do.

[azatoth]

I recall I used the "official installer" back in the days; and I've only one poetry in $PATH which points to ~/.local/bin/poetry which symlinks to ~/.local/share/pypoetry/venv/bin/poetry which itself executes ~/.local/share/pypoetry/venv/bin/python

All other updates went smoothly, only that one caused issue, and I have no idea why.

I do have sqlalchemy as a normal dependency for the package, but I have no clue why it would have any bearing on poetry self update

poetry self update --dry-run

$ poetry self update --dry-run
Updating Poetry version ...

Using version ^1.8.3 for poetry

Updating dependencies
Resolving dependencies... (1.4s)

Package operations: 9 installs, 6 updates, 0 removals, 79 skipped

  - Updating idna (3.7 -> 3.8)
  - Updating zipp (3.20.0 -> 3.20.1)
  - Updating importlib-metadata (8.2.0 -> 8.4.0)
  - Downgrading protobuf (5.27.3 -> 4.25.4)
  - Updating rich (13.7.1 -> 13.8.0)
  - Installing greenlet (3.0.3)
  - Updating pyparsing (3.1.2 -> 3.1.4)
  - Installing absl-py (2.1.0): Skipped for the following reason: Already installed
  - Installing astunparse (1.6.3): Skipped for the following reason: Already installed
  - Installing build (1.2.1): Skipped for the following reason: Already installed
  - Installing certifi (2024.7.4): Skipped for the following reason: Already installed
  - Installing charset-normalizer (3.3.2): Skipped for the following reason: Already installed
  - Installing cleo (2.1.0): Skipped for the following reason: Already installed
  - Installing click (8.1.7): Skipped for the following reason: Already installed
  - Installing cachecontrol (0.14.0): Skipped for the following reason: Already installed
  - Installing cffi (1.17.0): Skipped for the following reason: Already installed
  - Installing cycler (0.12.1): Skipped for the following reason: Already installed
  - Installing contourpy (1.2.1): Skipped for the following reason: Already installed
  - Installing distlib (0.3.8): Skipped for the following reason: Already installed
  - Installing filelock (3.15.4): Skipped for the following reason: Already installed
  - Installing flatbuffers (24.3.25): Skipped for the following reason: Already installed
  - Installing gast (0.6.0): Skipped for the following reason: Already installed
  - Installing dulwich (0.21.7): Skipped for the following reason: Already installed
  - Installing grpcio (1.66.0): Skipped for the following reason: Already installed
  - Installing installer (0.7.0): Skipped for the following reason: Already installed
  - Installing jeepney (0.8.0): Skipped for the following reason: Already installed
  - Installing fonttools (4.53.1): Skipped for the following reason: Already installed
  - Installing keras (3.5.0): Skipped for the following reason: Already installed
  - Installing fastjsonschema (2.20.0): Skipped for the following reason: Already installed
  - Installing keyring (24.3.1): Skipped for the following reason: Already installed
  - Installing deptry (0.19.1): Skipped for the following reason: Already installed
  - Installing markdown (3.7): Skipped for the following reason: Already installed
  - Installing crashtest (0.4.1): Skipped for the following reason: Already installed
  - Installing markdown-it-py (3.0.0): Skipped for the following reason: Already installed
  - Installing google-pasta (0.2.0): Skipped for the following reason: Already installed
  - Installing h5py (3.11.0): Skipped for the following reason: Already installed
  - Installing more-itertools (10.4.0): Skipped for the following reason: Already installed
  - Installing libclang (18.1.1): Skipped for the following reason: Already installed
  - Installing cryptography (43.0.0): Skipped for the following reason: Already installed
  - Installing markupsafe (2.1.5): Skipped for the following reason: Already installed
  - Installing opt-einsum (3.3.0): Skipped for the following reason: Already installed
  - Installing kiwisolver (1.4.5): Skipped for the following reason: Already installed
  - Installing packaging (24.1): Skipped for the following reason: Already installed
  - Installing namex (0.0.8): Skipped for the following reason: Already installed
  - Installing pexpect (4.9.0): Skipped for the following reason: Already installed
  - Installing pillow (10.4.0): Skipped for the following reason: Already installed
  - Installing mdurl (0.1.2): Skipped for the following reason: Already installed
  - Installing ml-dtypes (0.4.0): Skipped for the following reason: Already installed
  - Installing poetry (1.8.3): Skipped for the following reason: Already installed
  - Installing poetry-plugin-export (1.8.0): Skipped for the following reason: Already installed
  - Installing pandas (2.2.2)
  - Installing pycparser (2.22): Skipped for the following reason: Already installed
  - Installing pygments (2.18.0): Skipped for the following reason: Already installed
  - Installing pkginfo (1.11.1): Skipped for the following reason: Already installed
  - Installing pymssql (2.3.1)
  - Installing msgpack (1.0.8): Skipped for the following reason: Already installed
  - Installing jaraco-classes (3.4.0): Skipped for the following reason: Already installed
  - Installing ptyprocess (0.7.0): Skipped for the following reason: Already installed
  - Installing matplotlib (3.9.2)
  - Installing optree (0.12.1): Skipped for the following reason: Already installed
  - Installing platformdirs (4.2.2): Skipped for the following reason: Already installed
  - Installing pyproject-hooks (1.1.0): Skipped for the following reason: Already installed
  - Installing schedule (1.2.2)
  - Installing pytz (2024.1): Skipped for the following reason: Already installed
  - Installing scipy (1.14.1): Skipped for the following reason: Already installed
  - Installing rapidfuzz (3.9.6): Skipped for the following reason: Already installed
  - Installing shellingham (1.5.4): Skipped for the following reason: Already installed
  - Installing six (1.16.0): Skipped for the following reason: Already installed
  - Installing tabulate (0.9.0)
  - Installing joblib (1.4.2): Skipped for the following reason: Already installed
  - Installing numpy (1.26.4): Skipped for the following reason: Already installed
  - Installing requests (2.32.3): Skipped for the following reason: Already installed
  - Installing tensorflow (2.17.0)
  - Installing requests-toolbelt (1.0.0): Skipped for the following reason: Already installed
  - Installing sqlalchemy (2.0.32)
  - Installing threadpoolctl (3.5.0): Skipped for the following reason: Already installed
  - Installing tomlkit (0.13.2): Skipped for the following reason: Already installed
  - Installing tensorboard (2.17.1): Skipped for the following reason: Already installed
  - Installing trove-classifiers (2024.7.2): Skipped for the following reason: Already installed
  - Installing typing-extensions (4.12.2): Skipped for the following reason: Already installed
  - Installing tzdata (2024.1): Skipped for the following reason: Already installed
  - Installing poetry-core (1.9.0): Skipped for the following reason: Already installed
  - Installing virtualenv (20.26.3): Skipped for the following reason: Already installed
  - Installing werkzeug (3.0.4): Skipped for the following reason: Already installed
  - Installing wheel (0.44.0): Skipped for the following reason: Already installed
  - Installing secretstorage (3.3.3): Skipped for the following reason: Already installed
  - Installing termcolor (2.4.0): Skipped for the following reason: Already installed
  - Installing urllib3 (2.2.2): Skipped for the following reason: Already installed
  - Installing python-dateutil (2.9.0.post0): Skipped for the following reason: Already installed
  - Installing setuptools (73.0.1): Skipped for the following reason: Already installed
  - Installing tensorflow-io-gcs-filesystem (0.37.1): Skipped for the following reason: Already installed
  - Installing scikit-learn (1.5.1)
  - Installing wrapt (1.16.0): Skipped for the following reason: Already installed
  - Installing tensorboard-data-server (0.7.2): Skipped for the following reason: Already installed

[azatoth]

@Secrus do you have any clues what I might have done to upset my system, or am I just misunderstanding some kind of feature?