Repositories list

• Brown-2025

  Public
  Analysis script for snRNA-seq of the mediobasal hypothalamus and dorsal vagal complex

  GNU General Public License v3.0

  •0•0•0•0•Updated May 22, 2025May 22, 2025

• Rausch-2025

  Public
  R

  •0•0•0•0•Updated Apr 6, 2025Apr 6, 2025

• Ludwig-Coester-Gordian-2025

  Public
  0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• Sass-2024

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• CELLECT

  Public
  CELLECT (CELL-type Expression-specific integration for Complex Traits)

  Python

  •

  GNU General Public License v3.0

  •23•86•33•0•Updated Aug 16, 2024Aug 16, 2024

• Aalling-Todorov-Hassan-2025

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 4, 2024Jul 4, 2024

• glp1r_leptin

  Public
  R

  •0•0•0•0•Updated Apr 4, 2024Apr 4, 2024

• Petersen-Nature-2024

  Public
  0•0•0•0•Updated Mar 5, 2024Mar 5, 2024

• Lund-Ranea-Robles-2023

  Public
  Analysis script for Bulk RNA-seq data from hypothalamus

  0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

• Ludwig-AD-2025

  Public
  R

  •0•0•0•0•Updated Oct 9, 2023Oct 9, 2023

• wgcna-toolbox

  Public
  Perslab toolbox for Weighted Gene Co-Expression Network Analysis

  R

  •2•6•2•0•Updated Jul 1, 2023Jul 1, 2023

• CELLEX

  Public
  CELLEX (CELL-type EXpression-specificity)

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •10•43•9•0•Updated Jun 2, 2023Jun 2, 2023

• Falk-2022

  Public
  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 12, 2023Apr 12, 2023

• depict

  Public
  DEPICT code, instructions and an example

  Java

  •

  GNU General Public License v3.0

  •22•50•21•2•Updated Jul 15, 2022Jul 15, 2022

• critical_period

  Public
  R

  •0•0•0•0•Updated Mar 31, 2022Mar 31, 2022

• fred-2022

  Public
  Analysis scripts for fred-2022 NASH project

  R

  •0•2•0•0•Updated Dec 2, 2021Dec 2, 2021

• timshel-2020

  Public
  Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)

  gwassingle-cell-genomicsobesity+ 2cellexcellect

  R

  •

  GNU General Public License v3.0

  •4•14•0•0•Updated May 20, 2021May 20, 2021

• Ludwig-Diabetes-2021

  Public
  0•2•0•0•Updated May 20, 2021May 20, 2021

• brown-rausch-iscience-2021

  Public
  R

  •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021

• Ludwig-2021

  Public
  R

  •0•2•1•0•Updated Mar 25, 2021Mar 25, 2021

• CUTnTag_analysis

  Public
  HTML

  •0•1•0•0•Updated Feb 26, 2021Feb 26, 2021

• Merino_2020

  Public
  Shell

  •

  MIT License

  •1•1•0•0•Updated Dec 15, 2020Dec 15, 2020

• Kakava-Georgiado-2020

  Public
  Scripts for making figures as presented in the paper by Kakava-Georgiado 2020

  R

  •0•0•0•0•Updated Nov 9, 2020Nov 9, 2020

• geneNetworkScripts

  Public
  R scripts for further analysis of gene networks

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 6, 2020Oct 6, 2020

• 19-BMI-brain-genesettests

  Public
  code for geneset tests for BMI brain paper

  R

  •

  Other

  •1•0•0•0•Updated Jun 26, 2020Jun 26, 2020

• 19-BMI-brain-compare-celltypes

  Public
  comparisons of celltype results for BMI brain project

  R

  •0•0•0•0•Updated Apr 27, 2020Apr 27, 2020

• perslab-sc-library

  Public
  Python scripts and data files for recurrent tasks

  Python

  •

  GNU General Public License v3.0

  •0•0•0•1•Updated Apr 27, 2020Apr 27, 2020

• scpipe

  Public
  Python

  •0•0•0•0•Updated Feb 24, 2020Feb 24, 2020

• sc_seurat

  Public
  Scripts for single-cell 'omics analysis

  HTML

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Feb 6, 2020Feb 6, 2020

• dworzynski-2020

  Public
  Source code for "Nationwide prediction of type 2 diabetes comorbidities" paper.

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Feb 2, 2020Feb 2, 2020