Harvard Medical School - Department of Biomedical Informatics

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361 repositories

ETLToolSuite-EntityGenerator
Public
This tool will generate Entity Files that can be used to load into Datasources.
Java
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Apache License 2.0
•1•0•0•0•Updated Jan 27, 2025Jan 27, 2025
pic-sure
Public
PIC-SURE API
Java
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Apache License 2.0
•3•5•0•6•Updated Jan 27, 2025Jan 27, 2025
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Jan 27, 2025Jan 27, 2025
i2b2v2-webclient
Public
JavaScript
•4•2•1•0•Updated Jan 27, 2025Jan 27, 2025
picsure-dictionary
Public
Java
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Apache License 2.0
•1•0•0•0•Updated Jan 27, 2025Jan 27, 2025
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
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Apache License 2.0
•0•1•0•10•Updated Jan 27, 2025Jan 27, 2025
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Python
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Apache License 2.0
•0•0•0•0•Updated Jan 27, 2025Jan 27, 2025
pic-sure-frontend-harness
Public
Shell
•0•0•0•0•Updated Jan 27, 2025Jan 27, 2025
cellpop
Public
Jupyter Notebook
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MIT License
•1•0•11•2•Updated Jan 27, 2025Jan 27, 2025
hypatio-app
Public
Python
•0•4•0•8•Updated Jan 27, 2025Jan 27, 2025
dbmi-fileservice
Public
Python
•0•2•0•4•Updated Jan 27, 2025Jan 27, 2025
fhirquestionnaire
Public
HTML
•0•2•0•4•Updated Jan 27, 2025Jan 27, 2025
dbmisvc-starter
Public
Python
•0•1•0•3•Updated Jan 27, 2025Jan 27, 2025
actions
Public
0•0•0•43•Updated Jan 27, 2025Jan 27, 2025
avillachlab-jenkins
Public
HCL
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Apache License 2.0
•6•5•0•0•Updated Jan 24, 2025Jan 24, 2025
pic-sure-metadata-curation
Public
Parse and generate variable-level data to be exposed through the search interface.
SAS
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Apache License 2.0
•2•2•0•0•Updated Jan 24, 2025Jan 24, 2025
pic-sure-auth-microapp
Public
Java
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Apache License 2.0
•5•4•0•1•Updated Jan 24, 2025Jan 24, 2025
vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks gehlenborglab zarr viv imjoy
TypeScript
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MIT License
•18•134•19•11•Updated Jan 24, 2025Jan 24, 2025
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
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Apache License 2.0
•0•1•0•2•Updated Jan 24, 2025Jan 24, 2025
chromoscope
Public
Interactive multiscale visualization for structural variation in human genomes
TypeScript
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MIT License
•7•67•33•2•Updated Jan 23, 2025Jan 23, 2025
service-workbench-on-aws
Public
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
JavaScript
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Apache License 2.0
•118•7•0•0•Updated Jan 23, 2025Jan 23, 2025
PICTURE
Public
Pathology Imaging Characterization with Uncertainty-aware Rapid Evaluation (PICTURE)
Jupyter Notebook
•2•1•0•1•Updated Jan 22, 2025Jan 22, 2025
pic-sure-hpds
Public
Java
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Apache License 2.0
•6•3•0•6•Updated Jan 22, 2025Jan 22, 2025
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy gehlenborglab zarr hubmap viv
JavaScript
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MIT License
•47•293•44•5•Updated Jan 22, 2025Jan 22, 2025
pic-sure-bdc-infrastructure
Public
HCL
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Apache License 2.0
•1•5•0•2•Updated Jan 21, 2025Jan 21, 2025
service-workbench-infrastructure-tools
Public
AWS lambda functions to extend SWB functionality
JavaScript
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Apache License 2.0
•0•2•0•1•Updated Jan 21, 2025Jan 21, 2025
gehlenborglab-website
Public
Code for Gehlenborg Lab website.
website gehlenborglab hidivelab
TypeScript
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MIT License
•38•8•21•24•Updated Jan 20, 2025Jan 20, 2025
pic-sure-all-in-one
Public
Shell
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Apache License 2.0
•12•4•0•1•Updated Jan 17, 2025Jan 17, 2025
pic-sure-gic-institution-release-control
Public
Apache License 2.0
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
pic-sure-baseline-release-control
Public
5•0•0•0•Updated Jan 16, 2025Jan 16, 2025