Repositories list

• Bits_and_pieces_for_the_carpentries_workshops

  Public
  Bits and pieces for the carpentries workshops

  hacktoberfest

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •25•15•7•0•Updated Oct 8, 2024Oct 8, 2024

• InteractOA

  Public
  InteractOA

  HTML

  •

  Other

  •0•1•0•0•Updated Oct 8, 2024Oct 8, 2024

• READemption

  Public
  A pipeline for the computational evaluation of RNA-Seq data

  bioinformaticsrna-seq

  Python

  •

  Other

  •19•37•22•1•Updated Sep 10, 2024Sep 10, 2024

• patent_publication_links

  Public
  code for the paper "Knowledge transfer from science to economy illustrated via patent - publication pairs: reducing ambiguities with word embeddings and references"

  Python

  •1•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• 2024-Course_Data_Visualization_Master_Digital_Sciences

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •9•1•0•0•Updated Aug 2, 2024Aug 2, 2024

• Training_Material-Data_Visualisation

  Public
  Training Material for teaching Data Visualisation

  oerdata-visualisationdata-viz+ 3plottingopeneducationplotting-in-python

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Jun 23, 2024Jun 23, 2024

• 2024-06-10-Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

• NSLP2024-FoRC

  Public
  Jupyter Notebook

  •1•0•0•0•Updated May 25, 2024May 25, 2024

• Training_Material-Machine_Learning_and_Deep_Learning_for_the_Life_Sciences

  Public
  Traning Material for Machine Learning and Deep Learning for the Life Sciences

  machine-learningbioinformaticsdeep-learning

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Apr 13, 2024Apr 13, 2024

• Lab_Knowledge_Base

  Public
  A small collection of useful tutorials and links

  hacktoberfest

  Jupyter Notebook

  •

  Other

  •8•14•0•0•Updated Apr 13, 2024Apr 13, 2024

• 2024-04-08-Workshop_New-Delhi-Omics-data-analytics-and-AI-approaches

  Public
  2024-04-08-Workshop New-Delhi Omics data analytics and AI approaches

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• Publication_list

  Public
  Publication list of the research group lead by Konrad Förstner

  Python

  •2•0•6•0•Updated Mar 5, 2024Mar 5, 2024

• gffpandas

  Public
  Parse GFF3 into Pandas dataframes

  Python

  •

  ISC License

  •10•26•8•2•Updated Feb 21, 2024Feb 21, 2024

• 2023-10-23-Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Oct 27, 2023Oct 27, 2023

• Code_of_Conduct

  Public
  Code of conduct o the Data Science and Service Group at ZB MED

  0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

• GRADitude

  Public
  GRADitude - The GRAD-seq data analysis tool

  Python

  •

  Other

  •0•1•6•1•Updated Jul 6, 2023Jul 6, 2023

• data_visualization_coursework_template

  Public
  0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

• 2022-10-19-DIS18_a_b_Praxisprojekt_I-Grundlagen_und_Anweldungen_von_Knowledge_Graphs

  Public
  DIS18 a b Praxisprojekt I - Grundlagen und Anweldungen von Knowledge Graphs

  Creative Commons Zero v1.0 Universal

  •9•1•0•3•Updated Mar 29, 2023Mar 29, 2023

• CoxBase-Webapp

  Public
  A central platform for Coxiella typing data management

  bioinformaticswebapp

  JavaScript

  •

  ISC License

  •2•0•0•2•Updated Mar 25, 2023Mar 25, 2023

• sRNA_Interactions_to_Wikidata_Importer

  Public
  A tool to import small RNA interactions from database dumps into Wikidata

  Python

  •

  Other

  •0•1•0•0•Updated Feb 14, 2023Feb 14, 2023

• GFF_to_Wikidata_importer

  Public
  Tool to import genomic annotations from GFF files into Wikidata

  Python

  •

  Other

  •0•0•0•0•Updated Feb 14, 2023Feb 14, 2023

• 2022-12-05-Workshop-Einfuehrung_in_das_maschinelle_Lernen_fuer_BibliothekarInnen

  Public
  ZBIW Workshop Einführung in das maschinelle Lernen für BibliothekarInnen

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Dec 6, 2022Dec 6, 2022

• SSH_tutorial

  Public
  SSH tutorial

  sshoer

  Makefile

  •7•1•0•0•Updated Aug 15, 2022Aug 15, 2022

• HiCsuntdracones

  Public
  HiC sunt dracones - or HiCDS in short - Your little helper for the HiC analysis

  visualizationclibioinformatics+ 2hi-chic

  Python

  •

  ISC License

  •1•0•18•1•Updated Jul 13, 2022Jul 13, 2022

• 2022-07-04-Supervised_Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Jul 5, 2022Jul 5, 2022

• 2021-08-26-Visualisation_basics_for_data_exploration_and_communication

  Public
  Visualization basics for data exploration and communication

  Jupyter Notebook

  •0•0•0•0•Updated Aug 26, 2021Aug 26, 2021

• 2021-06-21-Supervised_Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

  Public
  Session "Supervised Machine Learning" as part of the EBI cours "Systems Biology - From large data sets to biological insight" 2021

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •2•2•0•0•Updated Aug 18, 2021Aug 18, 2021

• TIPlib

  Public
  TAKE IT PERSONALLY (TIP) - A Python library for data enrichment for infometrical applications

  Python

  •

  Other

  •1•4•1•1•Updated Dec 11, 2019Dec 11, 2019

• Training_Badges

  Public
  1•0•0•0•Updated Aug 8, 2019Aug 8, 2019

• COVERnant

  Public
  COVERnant - A tool to generate and manipulate coverage plots of high-throughput sequencing data.

  Python

  •

  ISC License

  •3•1•16•0•Updated Apr 17, 2018Apr 17, 2018