Repositories list

• CLAW

  Public
  Jupyter Notebook

  •

  Other

  •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

• SciBORG_UI

  Public
  Enhanced ChatGPT Clone: Features Agents, DeepSeek, Anthropic, AWS, OpenAI, Assistants API, Azure, Groq, o1, GPT-4o, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message search, Code Interpreter, langchain, DALL-E-3, OpenAPI Actions, Functions, Secure Multi-User Auth, Presets, open-source for self-hosting. Active project.

  TypeScript

  •

  MIT License

  •3.7k•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• CHM579

  Public
  Jupyter Notebook

  •1•2•0•0•Updated Jan 31, 2025Jan 31, 2025

• paddy

  Public
  Python

  •

  Other

  •0•4•0•0•Updated Jan 21, 2025Jan 21, 2025

• ThePaddyManuscript

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• Impact-Microglia-2024

  Public
  Lipidomics data and code for the impact manuscript

  R

  •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• geneva_mm_data

  Public
  Python

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• PLA2G2F-Lipidomics

  Public
  R

  •0•1•0•0•Updated Jun 19, 2024Jun 19, 2024

• Microglia-Transfer-Learning

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•4•Updated May 29, 2024May 29, 2024

• drosophila_brain_lipidomics_Byrns_et_all

  Public
  R

  •0•0•0•0•Updated May 20, 2024May 20, 2024

• Cliquify

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Jul 10, 2023Jul 10, 2023

• Paddy_Manuscript_Repo

  Public
  Python

  •0•1•0•0•Updated Jul 5, 2023Jul 5, 2023

• PROTAC-RL

  Public
  Python

  •

  MIT License

  •25•0•0•0•Updated Jun 22, 2023Jun 22, 2023

• Solvent-MLP

  Public
  Python

  •0•1•0•0•Updated Mar 30, 2023Mar 30, 2023

• Bioanalytical_Assay_Manuscript_Repo

  Public
  Repo containing GMM assay scoring and WAND

  Jupyter Notebook

  •0•0•0•0•Updated Jan 31, 2023Jan 31, 2023

• unet

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2023Jan 10, 2023

• egnn

  Public
  Python

  •0•5•0•0•Updated Dec 21, 2022Dec 21, 2022

• cipher_db

  Public
  Repository for RESTful API, GUI, and Mongo DB triggers for the cipher database

  Python

  •0•2•2•1•Updated Aug 25, 2022Aug 25, 2022

• ASPIRE_QSAR

  Public
  QSAR models for the ASPIRE Grant Project

  Jupyter Notebook

  •0•0•0•0•Updated Aug 5, 2022Aug 5, 2022

• reactive_astrocytes_omics

  Public
  Data, code, and plots for the astrocyte lipid paper. Nature, 2021. PMID: 34616039

  HTML

  •2•2•0•0•Updated Jul 12, 2022Jul 12, 2022

• cbm_ml_automation

  Public
  HTML

  •0•0•0•0•Updated Jun 30, 2022Jun 30, 2022

• BioPAN_Tutorial

  Public
  TeX

  •1•0•0•0•Updated Mar 30, 2022Mar 30, 2022

• CBM_projects

  Public
  Python

  •1•0•0•0•Updated Mar 23, 2022Mar 23, 2022

• lipids_CBM

  Public
  Python

  •0•0•0•0•Updated Feb 8, 2022Feb 8, 2022

• MSI-self-supervised-clustering

  Public
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •5•0•0•0•Updated Dec 22, 2021Dec 22, 2021

• alphafold

  Public
  Open source code for AlphaFold.

  Python

  •

  Apache License 2.0

  •2.3k•0•0•0•Updated Dec 15, 2021Dec 15, 2021

• microglia_omics

  Public
  Code, plots, and data for the microglia lipid droplet paper.

  HTML

  •0•0•0•0•Updated Dec 13, 2021Dec 13, 2021

• openfold

  Public
  Trainable PyTorch reproduction of AlphaFold 2

  Python

  •

  Apache License 2.0

  •568•0•0•0•Updated Nov 13, 2021Nov 13, 2021

• MSI-image-generator

  Public
  A mass spectrometry imaging (MSI) data processing pipeline to generate ion images with Thermo .raw and Agilent .d files.

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Nov 11, 2021Nov 11, 2021

• utils

  Public
  Repository for commonly used utility scripts for cheminformatics, bioinformatics, data parsing, machine learning, and other applications

  Python

  •0•0•0•0•Updated Nov 4, 2021Nov 4, 2021