Repositories list

• pyeed

  Public
  🧬 Toolkit to create, annotate, and analyze specialized sequence databases

  bioinformatics

  Python

  •

  MIT License

  •4•3•5•0•Updated Oct 11, 2024Oct 11, 2024

• PHA-Depolymerases

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• PyEED_JupyterLab

  Public
  🐳 Docker image with JupyterLab and pyeed

  Python

  •

  MIT License

  •1•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• TEM-lactamase

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

• data-models

  Public
  MIT License

  •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

• prototyping

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• CANDy

  Public
  CANDy allows the domain detection and annotation of protein sequences from any CAZy family.

  Jupyter Notebook

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• colab-example

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 27, 2024Feb 27, 2024

• LED-DB

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

• .github

  Public
  0•0•0•0•Updated Nov 6, 2023Nov 6, 2023

• TEMdatabase

  Public
  TEM adaptive database for a personal update and discovery on new TEM beta lactamases

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jun 26, 2023Jun 26, 2023

• PyEED-jupyternotebook

  Public
  Jupyter notebook datamodel

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

• PAZy

  Public
  Reading in data from PAZy using the pyeed-data-model

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 17, 2023Jan 17, 2023

• sdrdm-template

  Public template
  Python

  •11•0•0•0•Updated Aug 29, 2022Aug 29, 2022