{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"DIGS-BB_LM_Course_Bio-Image_Analysis_2024","owner":"BiAPoL","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-18T13:25:08.849Z"}},{"type":"Public","name":"napari-clusters-plotter","owner":"BiAPoL","isFork":false,"description":"A napari plugin for clustering objects according to their properties.","allTopics":["clustering","plotting","napari-plugin","python"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":5,"issueCount":33,"starsCount":78,"forksCount":10,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-17T10:00:46.769Z"}},{"type":"Public","name":"omero-tools","owner":"BiAPoL","isFork":false,"description":"Example notebooks and tricks to interact with OMERO from Python","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-02T12:02:23.865Z"}},{"type":"Public","name":"biaplotter","owner":"BiAPoL","isFork":false,"description":"A base napari plotter widget for interactive plotting","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":7,"starsCount":5,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-22T10:13:13.542Z"}},{"type":"Public","name":"blog","owner":"BiAPoL","isFork":false,"description":"Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.","allTopics":[],"primaryLanguage":null,"pullRequestCount":3,"issueCount":8,"starsCount":12,"forksCount":8,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-21T09:16:01.332Z"}},{"type":"Public","name":"BioImage-Analysis-and-Data-Processing-Workshop-2024","owner":"BiAPoL","isFork":false,"description":"This repository hosts material for the BioImage Analysis and Data Processing Workshop 2024, which takes place in VMCF Microscopy Facility, Vinicna 7, Prague, Czechia","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T14:26:45.915Z"}},{"type":"Public","name":"napari-clusters-plotter-example-notebooks","owner":"BiAPoL","isFork":false,"description":"This repository hosts jupyter notebooks with examples of napari-clusters-plotter usage ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":1,"starsCount":3,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T14:53:06.395Z"}},{"type":"Public","name":"PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis","owner":"BiAPoL","isFork":false,"description":"PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track","allTopics":["training-materials"],"primaryLanguage":{"name":"Cool","color":"#ccc"},"pullRequestCount":0,"issueCount":0,"starsCount":25,"forksCount":9,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-05T08:50:22.818Z"}},{"type":"Public","name":".github","owner":"BiAPoL","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T14:03:14.640Z"}},{"type":"Public","name":"biapol.github.io","owner":"BiAPoL","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T08:22:12.621Z"}},{"type":"Public","name":"napari-crop","owner":"BiAPoL","isFork":false,"description":"","allTopics":["napari-plugin"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":17,"starsCount":7,"forksCount":4,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-05T11:07:44.389Z"}},{"type":"Public","name":"microscope-gym","owner":"BiAPoL","isFork":false,"description":"An open python smart-microscopy API","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-28T16:02:50.143Z"}},{"type":"Public","name":"Pasteur-NEUBIAS-training-school-on-Bioimage-Analysis","owner":"BiAPoL","isFork":true,"description":"Training school focused on Bioimage Analysis. Home page: https://research.pasteur.fr/en/course/neubias-pasteur-course-on-bioimage-analysis/","allTopics":["training-materials"],"primaryLanguage":{"name":"Cool","color":"#ccc"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":7,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-14T05:52:25.221Z"}},{"type":"Public","name":"Fileserver-to-HPC","owner":"BiAPoL","isFork":false,"description":"Monitors a folder and automatically processes new subdirectories on an HPC cluster.","allTopics":[],"primaryLanguage":{"name":"Roff","color":"#ecdebe"},"pullRequestCount":1,"issueCount":1,"starsCount":2,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-22T10:48:35.734Z"}},{"type":"Public","name":"Bio-image_Analysis_with_Python","owner":"BiAPoL","isFork":false,"description":"Lecture materials \"Bio-image analysis, biostatistics, programming and machine learning for computational biology\" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden","allTopics":["training-materials"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":3,"starsCount":195,"forksCount":47,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-11T10:27:00.931Z"}},{"type":"Public","name":"DIGS-BB_LM_Course_Bio-Image_Analysis_2023","owner":"BiAPoL","isFork":false,"description":"This repository contains a collection of Python Jupyter notebooks for a one afternoon course in Image Analysis using Python and Napari. ","allTopics":["training-materials"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-07T11:09:27.907Z"}},{"type":"Public","name":"PoL-BioImage-Analysis-TS-Early-Career-Track","owner":"BiAPoL","isFork":false,"description":"","allTopics":["training-materials"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":3,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-06T07:59:23.596Z"}},{"type":"Public","name":"scripts","owner":"BiAPoL","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-02T16:47:28.982Z"}},{"type":"Public","name":"docker-example-omero","owner":"BiAPoL","isFork":true,"description":"OMERO Docker compose example","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":26,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-28T20:56:14.221Z"}},{"type":"Public","name":"Image-data-science-with-Python-and-Napari-EPFL2022","owner":"BiAPoL","isFork":false,"description":"","allTopics":["training-materials"],"primaryLanguage":{"name":"Cool","color":"#ccc"},"pullRequestCount":1,"issueCount":2,"starsCount":13,"forksCount":7,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-21T10:17:48.790Z"}},{"type":"Public","name":"guanine-crystal-analysis","owner":"BiAPoL","isFork":false,"description":"A plugin for the guanine crystal segmentation, classification and characterization in the zebrafish eye","allTopics":[],"primaryLanguage":{"name":"Cool","color":"#ccc"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-30T13:52:46.430Z"}},{"type":"Public","name":"napari-polo","owner":"BiAPoL","isFork":false,"description":"A napari Plugin for Polarised Light Microscopy Analysis","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":4,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-04T14:00:49.220Z"}},{"type":"Public","name":"Rescaling-blogpost","owner":"BiAPoL","isFork":false,"description":"This repository hosts a jupyter notebook and a minimal example for the rescaling-blogpost","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-17T07:40:03.368Z"}},{"type":"Public","name":"Annotation-in-3D-blogpost","owner":"BiAPoL","isFork":false,"description":"This repository hosts a proposal for an annotation template for community annotations","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-17T07:39:00.016Z"}},{"type":"Public","name":"Segmentation-quality-assurance-blogpost","owner":"BiAPoL","isFork":false,"description":"This repository hosts jupyter notebooks, images and videos for the segmentation quality assurance blog post.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-17T07:38:04.718Z"}},{"type":"Public","name":"biapol-taurus","owner":"BiAPoL","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":6,"starsCount":2,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-09T09:35:21.358Z"}},{"type":"Public","name":"stardist-envs","owner":"BiAPoL","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-27T12:03:53.244Z"}},{"type":"Public","name":"blog-1","owner":"BiAPoL","isFork":true,"description":"Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":8,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-20T16:23:18.923Z"}},{"type":"Public","name":"HIP_Summer_School_Image_Data_Visualization_101","owner":"BiAPoL","isFork":false,"description":"","allTopics":["training-materials"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-20T10:27:25.950Z"}},{"type":"Public","name":"hackathon-london-2022-11","owner":"BiAPoL","isFork":false,"description":"Collection of code from the CLIJ-CZI-EOSS hackathon at the Francis Crick Institute in Londin","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-25T10:09:17.520Z"}}],"repositoryCount":40,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"BiAPoL repositories"}