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    19 repositories

    • RNA-KG

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •1•15•0•0•Updated Nov 12, 2024Nov 12, 2024

    • Finenzyme

      Public
      Language modeling for enzyme sequences
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • hetnode2vec_ensmallen

      Public
      This repository provides an implementation to add Het-node2vec as a library to Grape.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • ensmallen

      Public
      🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.
      pythonprocessingrustgraph
      Python
      •
      MIT License
      •12•38•11•0•Updated Aug 5, 2024Aug 5, 2024

    • DR_omics_integration

      Public
      code and material to run all the experiments for dimensionality reduction guided by block analysis, data integration, OS prediction
      R
      •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • grape

      Public
      🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations
      machine-learninggraphhigh-performanceknowledge-graph
      Jupyter Notebook
      •
      MIT License
      •38•539•34•0•Updated Feb 24, 2024Feb 24, 2024

    • sHAM

      Public
      Compact representations of convolutional neural networks via weight pruning and quantization
      neural-network-compressioncompressiondeep-learningneural-network
      Python
      •
      Apache License 2.0
      •3•8•0•0•Updated Jul 18, 2023Jul 18, 2023

    • obogaf-parser

      Public
      a perl5 module to handle obo and gaf file
      Perl
      •
      Other
      •1•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • godata-pipe

      Public
      a pipeline to build datasets for GO terms prediction
      Perl
      •
      Other
      •1•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • hemdag

      Public
      an R package implementing several Hierarchical Ensemble Methods for graphs
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • grape.github.io

      Public
      Repository for the GraPE project website.
      Python
      •1•1•1•0•Updated Jul 8, 2022Jul 8, 2022

    • epigenomic_dataset

      Public
      Python package wrapping ENCODE epigenomic data for a number of reference cell lines.
      Jupyter Notebook
      •1•5•0•0•Updated Apr 21, 2022Apr 21, 2022

    • parSMURF-NG

      Public
      C++
      •
      Other
      •1•0•0•0•Updated Feb 24, 2022Feb 24, 2022

    • meta_models

      Public
      Python package with common meta-models building blocks.
      HTML
      •
      MIT License
      •0•1•0•0•Updated Apr 27, 2021Apr 27, 2021

    • crr_prediction

      Public
      Prediction of activation of cis-regulatory regions.
      Jupyter Notebook
      •0•0•0•0•Updated Apr 27, 2021Apr 27, 2021

    • DataAnalysisR

      Public
      A tool for statistical analysis, imputation via missForest, identification of most important variables
      R
      •
      MIT License
      •0•3•0•0•Updated Mar 17, 2021Mar 17, 2021

    • parSMURF

      Public
      High Performance Computing imbalance-aware machine learning tool for the genome-wide detection of pathogenic variants
      Python
      •
      GNU General Public License v3.0
      •2•6•3•0•Updated Dec 8, 2020Dec 8, 2020

    • MicroscopyImageAnalysis

      Public
      Published code for immunohistochemical image segmentation and co-occurrence analysis
      MATLAB
      •0•0•0•0•Updated Dec 5, 2020Dec 5, 2020

    • ParCOSNet

      Public
      C++
      •0•0•0•0•Updated Dec 5, 2017Dec 5, 2017