_config.yml

# Book settings
# Learn more at https://jupyterbook.org/customize/config.html

title: Worm Math Book
author: The OpenWorm Community
logo: logo.png
description: >- # this means to ignore newlines until "baseurl:"
  An online book focusing on the mathematical concepts and models for C. elegans.
# exclude_patterns: [file-types/include-rst.rst]

# Force re-execution of notebooks on each build.
# See https://jupyterbook.org/content/execute.html
execute:
  execute_notebooks: cache

# Define the name of the latex output file for PDF builds
latex:
  latex_engine: xelatex
  latex_documents:
    targetname: book.tex

# Add a bibtex file so that we can create citations
bibtex_bibfiles:
  - references.bib

# Information about where the book exists on the web
repository:
  url: https://github.com/openworm/worm-math-book  # Online location of your book
  path_to_book: book  # Optional path to your book, relative to the repository root
  branch: master  # Which branch of the repository should be used when creating links (optional)

# Add GitHub buttons to your book
# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository
html:
  use_issues_button: true
  use_repository_button: true
  # favicon: images/favicon.ico
  # google_analytics_id: 
  home_page_in_navbar: false
  use_edit_page_button: true
  baseurl: https://openworm.org/

launch_buttons:
  notebook_interface: "classic" # The interface interactive links will activate ["classic", "jupyterlab"]
  binderhub_url: "https://mybinder.org"
  colab_url: "https://colab.research.google.com"
  thebe: true

parse:
  myst_substitutions:
      sub3: My _global_ value!
  myst_enable_extensions:  # default extensions to enable in the myst parser. See https://myst-parser.readthedocs.io/en/latest/using/syntax-optional.html
    - amsmath
    - colon_fence
    - deflist
    - dollarmath
    - html_admonition
    - html_image
    - linkify
    - replacements
    - smartquotes
    - substitution