From fe313bd760882afd2a0af8d91dfe7a2a9fe70d04 Mon Sep 17 00:00:00 2001
From: Tomas Stary <tomas.stary@kit.edu>
Date: Sat, 21 Sep 2024 16:41:40 +0200
Subject: [PATCH]  Create JupyterLab based version of Dockerfile #347

---
 docker/Dockerfile-jupyter |  5 +++++
 docker/README.md          | 25 +++++++++++++++++++++++++
 docker/docker-compose.yml | 11 +++++++++++
 3 files changed, 41 insertions(+)
 create mode 100644 docker/Dockerfile-jupyter
 create mode 100644 docker/README.md
 create mode 100644 docker/docker-compose.yml

diff --git a/docker/Dockerfile-jupyter b/docker/Dockerfile-jupyter
new file mode 100644
index 0000000..fd6903b
--- /dev/null
+++ b/docker/Dockerfile-jupyter
@@ -0,0 +1,5 @@
+FROM openworm/openworm:latest
+
+RUN python -m pip install --user jupyterlab
+
+ENTRYPOINT ["python3", "-m", "jupyterlab", "--allow-root", "--ip", "0.0.0.0"]
\ No newline at end of file
diff --git a/docker/README.md b/docker/README.md
new file mode 100644
index 0000000..b77227c
--- /dev/null
+++ b/docker/README.md
@@ -0,0 +1,25 @@
+# Docker Related Files
+
+## Prerequisites
+
+Installed and configured docker and docker-compose are necessary to successfully
+run the container.
+
+## Building and running the container
+
+The container is build by
+```
+docker-compose build
+```
+and started by
+```
+docker-compose up -d
+```
+
+## JupyterLab setup
+
+To enter to the JupyterLab instance start the container and open
+http://127.0.0.1:8888/lab
+
+All the programs available in the openworm/openworm image are available in the
+jupyterlab interface.
diff --git a/docker/docker-compose.yml b/docker/docker-compose.yml
new file mode 100644
index 0000000..2505558
--- /dev/null
+++ b/docker/docker-compose.yml
@@ -0,0 +1,11 @@
+version: "3"
+services:
+  jupyter:
+    build:
+      context: ..
+      dockerfile: docker/Dockerfile-jupyter
+    volumes:
+      - ../output:/home/ow/shared/output/
+    network_mode: host
+    # user: ${MY_UID}:${MY_GID}
+    entrypoint: python3 -m jupyterlab --allow-root --NotebookApp.token=''