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remove disease dependencies
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workflow/src/main/resources/reference.conf

Lines changed: 9 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -61,9 +61,6 @@ existing-outputs {
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# arg is passed as the name of the job to execute.
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# when arg would form an invalid `step id` in Dataproc, specify a `name` variable.
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jobs = [
64-
{
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arg = "disease"
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},
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{
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arg = "reactome"
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},
@@ -76,7 +73,7 @@ jobs = [
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},
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{
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arg = "search_facet"
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deps = ["disease", "target", "go-step"]
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deps = ["target", "go-step"]
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},
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{
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arg = "go",
@@ -96,43 +93,43 @@ jobs = [
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},
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{
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arg = "evidence"
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deps = ["disease", "target", "epmc", "drug"]
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deps = ["target", "epmc", "drug"]
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},
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{
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arg = "association"
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deps = ["disease", "evidence"]
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deps = ["evidence"]
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},
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{
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arg = "association_otf"
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deps = ["disease", "evidence", "target", "reactome"]
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deps = ["evidence", "target", "reactome"]
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},
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{
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arg = "search"
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deps = ["target", "drug", "evidence", "association", "disease"]
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deps = ["target", "drug", "evidence", "association", ]
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},
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{
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arg = "drug"
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deps = ["target"]
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},
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{
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arg = "known_drug"
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deps = ["target", "disease", "drug", "evidence"]
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deps = ["target", "drug", "evidence"]
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},
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{
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arg = "search_ebi"
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deps = ["target", "disease", "evidence", "association"]
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deps = ["target", "evidence", "association"]
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},
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{
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arg = "openfda"
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deps = ["drug"]
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},
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{
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arg = "literature"
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deps = ["target", "disease", "drug"]
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deps = ["target", "drug"]
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},
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{
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arg = "otar"
135-
deps = ["disease"]
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deps = []
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},
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{
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arg = "target_engine"

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