diff --git a/src/api/comp_control_method.yaml b/src/api/comp_control_method.yaml index 50f24e77..a334badd 100644 --- a/src/api/comp_control_method.yaml +++ b/src/api/comp_control_method.yaml @@ -6,7 +6,7 @@ functionality: label: Control Method summary: A control method. description: | - A control method to predict perturbation effects. + A control method to serve as a quality control for the perturbation prediction benchmark. arguments: - name: --de_train_h5ad __merge__: file_de_train_h5ad.yaml diff --git a/src/api/comp_method_notest.yaml b/src/api/comp_method_notest.yaml index b1e68ca9..cb9ddde3 100644 --- a/src/api/comp_method_notest.yaml +++ b/src/api/comp_method_notest.yaml @@ -4,9 +4,9 @@ functionality: type: method type_info: label: Method - summary: A regression method. + summary: A perturbation prediction method description: | - A regression method to predict the expression of one modality from another. + A method for predicting the perturbation response of small molecules on certain cell types. arguments: - name: --de_train_h5ad __merge__: file_de_train_h5ad.yaml diff --git a/src/api/comp_metric.yaml b/src/api/comp_metric.yaml index 537e8fcc..ec7f4f39 100644 --- a/src/api/comp_metric.yaml +++ b/src/api/comp_metric.yaml @@ -4,9 +4,9 @@ functionality: type: metric type_info: label: Metric - summary: A metric to compare two predictions. + summary: A perturbation prediction metric description: | - A metric to compare two predictions. + A metric to compare a perturbation prediction to the ground truth. arguments: - name: --de_test_h5ad __merge__: file_de_test_h5ad.yaml diff --git a/src/process_dataset/bootstrap/config.vsh.yaml b/src/process_dataset/bootstrap/config.vsh.yaml index be60adf6..391ddca6 100644 --- a/src/process_dataset/bootstrap/config.vsh.yaml +++ b/src/process_dataset/bootstrap/config.vsh.yaml @@ -5,9 +5,9 @@ functionality: type: process_dataset type_info: label: Bootstrap - summary: A component to generate bootstraps of a dataset. + summary: Bootstrap a dataset description: | - This component generates bootstraps of a dataset. It takes as input a parquet file and an h5ad file and generates bootstraps of the dataset. The bootstraps are saved as parquet and h5ad files. + This component bootstraps a dataset. argument_groups: - name: Inputs arguments: diff --git a/src/process_dataset/run_limma/config.vsh.yaml b/src/process_dataset/run_limma/config.vsh.yaml index 9d9ee89e..cd84c852 100644 --- a/src/process_dataset/run_limma/config.vsh.yaml +++ b/src/process_dataset/run_limma/config.vsh.yaml @@ -7,7 +7,7 @@ functionality: label: Limma summary: Run limma description: | - Run limma for the parturbation regression task. + Run limma for the perturbation regression task. arguments: - name: --input type: file