diff --git a/CHANGELOG.md b/CHANGELOG.md
index 7bd0f6fc3c1..da24d8897ad 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,4 +1,4 @@
-# openpipelines 1.0.0rc2
+# openpipelines 1.0.0-rc2
 
 ## BUG FIXES
 
diff --git a/target/docker/annotate/popv/.config.vsh.yaml b/target/docker/annotate/popv/.config.vsh.yaml
index f3cadb541fb..c695d883dd4 100644
--- a/target/docker/annotate/popv/.config.vsh.yaml
+++ b/target/docker/annotate/popv/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "popv"
   namespace: "annotate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Matthias Beyens"
     roles:
@@ -253,7 +253,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -351,6 +351,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/annotate/popv"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/annotate/popv/popv"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/annotate/popv/popv b/target/docker/annotate/popv/popv
index cc0cf65c6dd..83a36fc2f8a 100755
--- a/target/docker/annotate/popv/popv
+++ b/target/docker/annotate/popv/popv
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# popv 1.0.0rc2
+# popv 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "popv 1.0.0rc2"
+  echo "popv 1.0.0-rc2"
   echo ""
   echo "Performs popular major vote cell typing on single cell sequence data using"
   echo "multiple algorithms. Note that this is a one-shot version of PopV."
@@ -503,10 +503,10 @@ RUN cd /opt && git clone --depth 1 https://github.com/YosefLab/PopV.git && \
 
 LABEL org.opencontainers.image.authors="Matthias Beyens, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component annotate popv"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -657,7 +657,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "popv 1.0.0rc2"
+            echo "popv 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -890,14 +890,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/annotate_popv:1.0.0-rc2'
   exit 0
 fi
 
@@ -1120,7 +1120,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/annotate_popv:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/annotate_popv:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1139,8 +1139,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/annotate_popv:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/annotate_popv:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/annotate_popv:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/annotate_popv:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-popv-XXXXXX").py
 function clean_up {
diff --git a/target/docker/cluster/leiden/.config.vsh.yaml b/target/docker/cluster/leiden/.config.vsh.yaml
index a599a1b13bf..dec55610d98 100644
--- a/target/docker/cluster/leiden/.config.vsh.yaml
+++ b/target/docker/cluster/leiden/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "leiden"
   namespace: "cluster"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -147,7 +147,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -230,6 +230,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/cluster/leiden"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/cluster/leiden/leiden"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/cluster/leiden/leiden b/target/docker/cluster/leiden/leiden
index f6211764f76..93d9ca3aea6 100755
--- a/target/docker/cluster/leiden/leiden
+++ b/target/docker/cluster/leiden/leiden
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# leiden 1.0.0rc2
+# leiden 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "leiden 1.0.0rc2"
+  echo "leiden 1.0.0-rc2"
   echo ""
   echo "Cluster cells using the [Leiden algorithm] [Traag18] implemented in the [Scanpy"
   echo "framework] [Wolf18]."
@@ -460,10 +460,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer"
 LABEL org.opencontainers.image.description="Companion container for running component cluster leiden"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -614,7 +614,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "leiden 1.0.0rc2"
+            echo "leiden 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -776,14 +776,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/cluster_leiden:1.0.0-rc2'
   exit 0
 fi
 
@@ -990,7 +990,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/cluster_leiden:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/cluster_leiden:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1009,8 +1009,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/cluster_leiden:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/cluster_leiden:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/cluster_leiden:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/cluster_leiden:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-leiden-XXXXXX").py
 function clean_up {
diff --git a/target/docker/compression/compress_h5mu/.config.vsh.yaml b/target/docker/compression/compress_h5mu/.config.vsh.yaml
index e9ecfe48941..86613c22150 100644
--- a/target/docker/compression/compress_h5mu/.config.vsh.yaml
+++ b/target/docker/compression/compress_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "compress_h5mu"
   namespace: "compression"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -89,7 +89,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -171,6 +171,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/compress_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/compress_h5mu/compress_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/compression/compress_h5mu/compress_h5mu b/target/docker/compression/compress_h5mu/compress_h5mu
index 35d1a712d01..8f21d075781 100755
--- a/target/docker/compression/compress_h5mu/compress_h5mu
+++ b/target/docker/compression/compress_h5mu/compress_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# compress_h5mu 1.0.0rc2
+# compress_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "compress_h5mu 1.0.0rc2"
+  echo "compress_h5mu 1.0.0-rc2"
   echo ""
   echo "Compress a MuData file."
   echo ""
@@ -423,10 +423,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component compression compress_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -577,7 +577,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "compress_h5mu 1.0.0rc2"
+            echo "compress_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -683,14 +683,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -874,7 +874,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -893,8 +893,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_compress_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-compress_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/compression/tar_extract/.config.vsh.yaml b/target/docker/compression/tar_extract/.config.vsh.yaml
index a6d3cd6c99f..af4ba8043f8 100644
--- a/target/docker/compression/tar_extract/.config.vsh.yaml
+++ b/target/docker/compression/tar_extract/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "tar_extract"
   namespace: "compression"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -93,7 +93,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -107,6 +107,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/tar_extract"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/compression/tar_extract/tar_extract"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/compression/tar_extract/tar_extract b/target/docker/compression/tar_extract/tar_extract
index 244b0ec2008..3cdac5e6f35 100755
--- a/target/docker/compression/tar_extract/tar_extract
+++ b/target/docker/compression/tar_extract/tar_extract
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# tar_extract 1.0.0rc2
+# tar_extract 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "tar_extract 1.0.0rc2"
+  echo "tar_extract 1.0.0-rc2"
   echo ""
   echo "Extract files from a tar archive"
   echo ""
@@ -421,10 +421,10 @@ ENTRYPOINT []
  
 RUN :
 LABEL org.opencontainers.image.description="Companion container for running component compression tar_extract"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -575,7 +575,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "tar_extract 1.0.0rc2"
+            echo "tar_extract 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -710,14 +710,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0-rc2'
   exit 0
 fi
 
@@ -889,7 +889,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -908,8 +908,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/compression_tar_extract:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-tar_extract-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/convert/from_10xh5_to_h5mu/.config.vsh.yaml b/target/docker/convert/from_10xh5_to_h5mu/.config.vsh.yaml
index e802e1c0f50..98431aed4c4 100644
--- a/target/docker/convert/from_10xh5_to_h5mu/.config.vsh.yaml
+++ b/target/docker/convert/from_10xh5_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_10xh5_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -201,7 +201,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -277,6 +277,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_10xh5_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu b/target/docker/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu
index 88744fa0cc5..2b965c9bc78 100755
--- a/target/docker/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu
+++ b/target/docker/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_10xh5_to_h5mu 1.0.0rc2
+# from_10xh5_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_10xh5_to_h5mu 1.0.0rc2"
+  echo "from_10xh5_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Converts a 10x h5 into an h5mu file."
   echo ""
@@ -445,10 +445,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_10xh5_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -599,7 +599,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_10xh5_to_h5mu 1.0.0rc2"
+            echo "from_10xh5_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -755,14 +755,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -962,7 +962,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -981,8 +981,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xh5_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_10xh5_to_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/convert/from_10xmtx_to_h5mu/.config.vsh.yaml b/target/docker/convert/from_10xmtx_to_h5mu/.config.vsh.yaml
index 5d614b9be5f..8b6f0b3922d 100644
--- a/target/docker/convert/from_10xmtx_to_h5mu/.config.vsh.yaml
+++ b/target/docker/convert/from_10xmtx_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_10xmtx_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -95,7 +95,7 @@ platforms:
   image: "python:3.8-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -171,6 +171,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_10xmtx_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu b/target/docker/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu
index 22a66dd1a7f..12bdb78ca07 100755
--- a/target/docker/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu
+++ b/target/docker/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_10xmtx_to_h5mu 1.0.0rc2
+# from_10xmtx_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_10xmtx_to_h5mu 1.0.0rc2"
+  echo "from_10xmtx_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Converts a 10x mtx into an h5mu file."
   echo ""
@@ -423,10 +423,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_10xmtx_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -577,7 +577,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_10xmtx_to_h5mu 1.0.0rc2"
+            echo "from_10xmtx_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -689,14 +689,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -871,7 +871,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -890,8 +890,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_10xmtx_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_10xmtx_to_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml b/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml
index d6589920424..8d524dbbb8a 100644
--- a/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml
+++ b/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_bd_to_10x_molecular_barcode_tags"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -95,7 +95,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -162,6 +162,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_bd_to_10x_molecular_barcode_tags"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags b/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags
index 111435b040f..d97aa61986a 100755
--- a/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags
+++ b/target/docker/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_bd_to_10x_molecular_barcode_tags 1.0.0rc2
+# from_bd_to_10x_molecular_barcode_tags 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_bd_to_10x_molecular_barcode_tags 1.0.0rc2"
+  echo "from_bd_to_10x_molecular_barcode_tags 1.0.0-rc2"
   echo ""
   echo "Convert the molecular barcode sequence SAM tag from BD format (MA) to 10X format"
   echo "(UB)."
@@ -424,10 +424,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_bd_to_10x_molecular_barcode_tags"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -578,7 +578,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_bd_to_10x_molecular_barcode_tags 1.0.0rc2"
+            echo "from_bd_to_10x_molecular_barcode_tags 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -701,14 +701,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0-rc2'
   exit 0
 fi
 
@@ -887,7 +887,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -906,8 +906,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_bd_to_10x_molecular_barcode_tags-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/convert/from_bdrhap_to_h5mu/.config.vsh.yaml b/target/docker/convert/from_bdrhap_to_h5mu/.config.vsh.yaml
index 0f800dd4e15..344e0b364c3 100644
--- a/target/docker/convert/from_bdrhap_to_h5mu/.config.vsh.yaml
+++ b/target/docker/convert/from_bdrhap_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_bdrhap_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -108,7 +108,7 @@ platforms:
   image: "ghcr.io/data-intuitive/randpy:r4.2_py3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -185,6 +185,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_bdrhap_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu b/target/docker/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu
index cab4e19ead5..9dd217683c5 100755
--- a/target/docker/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu
+++ b/target/docker/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_bdrhap_to_h5mu 1.0.0rc2
+# from_bdrhap_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_bdrhap_to_h5mu 1.0.0rc2"
+  echo "from_bdrhap_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Convert the output of a BD Rhapsody WTA pipeline to a MuData h5 file."
   echo ""
@@ -429,10 +429,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_bdrhap_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -583,7 +583,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_bdrhap_to_h5mu 1.0.0rc2"
+            echo "from_bdrhap_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --id)
@@ -706,14 +706,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -896,7 +896,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -915,8 +915,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_bdrhap_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_bdrhap_to_h5mu-XXXXXX").R
 function clean_up {
diff --git a/target/docker/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml b/target/docker/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml
index bfc74fcd029..39cfd26d6aa 100644
--- a/target/docker/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml
+++ b/target/docker/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_cellranger_multi_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -111,7 +111,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -195,6 +195,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_cellranger_multi_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu b/target/docker/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu
index a3566e7e24c..856266a4659 100755
--- a/target/docker/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu
+++ b/target/docker/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_cellranger_multi_to_h5mu 1.0.0rc2
+# from_cellranger_multi_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_cellranger_multi_to_h5mu 1.0.0rc2"
+  echo "from_cellranger_multi_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Converts the output from cellranger multi to a single .h5mu file."
   echo "By default, will map the following library type names to modality names:"
@@ -442,10 +442,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_cellranger_multi_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -596,7 +596,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_cellranger_multi_to_h5mu 1.0.0rc2"
+            echo "from_cellranger_multi_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -719,14 +719,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -906,7 +906,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -925,8 +925,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_cellranger_multi_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_cellranger_multi_to_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/convert/from_h5ad_to_h5mu/.config.vsh.yaml b/target/docker/convert/from_h5ad_to_h5mu/.config.vsh.yaml
index 0c59f943905..6c71970cdca 100644
--- a/target/docker/convert/from_h5ad_to_h5mu/.config.vsh.yaml
+++ b/target/docker/convert/from_h5ad_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_h5ad_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -101,7 +101,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -181,6 +181,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_h5ad_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu b/target/docker/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu
index 1969b4b449e..ba7f507666c 100755
--- a/target/docker/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu
+++ b/target/docker/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_h5ad_to_h5mu 1.0.0rc2
+# from_h5ad_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_h5ad_to_h5mu 1.0.0rc2"
+  echo "from_h5ad_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Converts a single layer h5ad file into a single MuData object"
   echo ""
@@ -427,10 +427,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_h5ad_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -581,7 +581,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_h5ad_to_h5mu 1.0.0rc2"
+            echo "from_h5ad_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -719,14 +719,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -924,7 +924,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -943,8 +943,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5ad_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_h5ad_to_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/convert/from_h5mu_to_h5ad/.config.vsh.yaml b/target/docker/convert/from_h5mu_to_h5ad/.config.vsh.yaml
index c2c4392d96c..a3bd36c590c 100644
--- a/target/docker/convert/from_h5mu_to_h5ad/.config.vsh.yaml
+++ b/target/docker/convert/from_h5mu_to_h5ad/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_h5mu_to_h5ad"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -106,7 +106,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -186,6 +186,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_h5mu_to_h5ad"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad b/target/docker/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad
index acde76857a0..5bf902cef22 100755
--- a/target/docker/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad
+++ b/target/docker/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_h5mu_to_h5ad 1.0.0rc2
+# from_h5mu_to_h5ad 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_h5mu_to_h5ad 1.0.0rc2"
+  echo "from_h5mu_to_h5ad 1.0.0-rc2"
   echo ""
   echo "Converts a h5mu file into a h5ad file."
   echo ""
@@ -428,10 +428,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_h5mu_to_h5ad"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -582,7 +582,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_h5mu_to_h5ad 1.0.0rc2"
+            echo "from_h5mu_to_h5ad 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -705,14 +705,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0-rc2'
   exit 0
 fi
 
@@ -898,7 +898,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -917,8 +917,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_h5ad:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_h5mu_to_h5ad-XXXXXX").py
 function clean_up {
diff --git a/target/docker/convert/from_h5mu_to_seurat/.config.vsh.yaml b/target/docker/convert/from_h5mu_to_seurat/.config.vsh.yaml
index 5105e844ea2..e18df299b4a 100644
--- a/target/docker/convert/from_h5mu_to_seurat/.config.vsh.yaml
+++ b/target/docker/convert/from_h5mu_to_seurat/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_h5mu_to_seurat"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -87,7 +87,7 @@ platforms:
   image: "eddelbuettel/r2u:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -186,6 +186,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_h5mu_to_seurat"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/from_h5mu_to_seurat/from_h5mu_to_seurat"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/from_h5mu_to_seurat/from_h5mu_to_seurat b/target/docker/convert/from_h5mu_to_seurat/from_h5mu_to_seurat
index c822ec644d7..8bb144660ea 100755
--- a/target/docker/convert/from_h5mu_to_seurat/from_h5mu_to_seurat
+++ b/target/docker/convert/from_h5mu_to_seurat/from_h5mu_to_seurat
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# from_h5mu_to_seurat 1.0.0rc2
+# from_h5mu_to_seurat 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "from_h5mu_to_seurat 1.0.0rc2"
+  echo "from_h5mu_to_seurat 1.0.0-rc2"
   echo ""
   echo "Converts an h5mu file into a Seurat file."
   echo ""
@@ -442,10 +442,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_h5mu_to_seurat"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -596,7 +596,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "from_h5mu_to_seurat 1.0.0rc2"
+            echo "from_h5mu_to_seurat 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -697,14 +697,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0-rc2'
   exit 0
 fi
 
@@ -870,7 +870,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -889,8 +889,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_from_h5mu_to_seurat:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-from_h5mu_to_seurat-XXXXXX").R
 function clean_up {
diff --git a/target/docker/convert/velocyto_to_h5mu/.config.vsh.yaml b/target/docker/convert/velocyto_to_h5mu/.config.vsh.yaml
index 15c642e160d..37189b91db5 100644
--- a/target/docker/convert/velocyto_to_h5mu/.config.vsh.yaml
+++ b/target/docker/convert/velocyto_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "velocyto_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -183,7 +183,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -260,6 +260,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/velocyto_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/convert/velocyto_to_h5mu/velocyto_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/convert/velocyto_to_h5mu/velocyto_to_h5mu b/target/docker/convert/velocyto_to_h5mu/velocyto_to_h5mu
index a7c223df075..feaeafa7cda 100755
--- a/target/docker/convert/velocyto_to_h5mu/velocyto_to_h5mu
+++ b/target/docker/convert/velocyto_to_h5mu/velocyto_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# velocyto_to_h5mu 1.0.0rc2
+# velocyto_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "velocyto_to_h5mu 1.0.0rc2"
+  echo "velocyto_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Convert a velocyto loom file to a h5mu file."
   echo ""
@@ -455,10 +455,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt, Angela Oliveira Pisco"
 LABEL org.opencontainers.image.description="Companion container for running component convert velocyto_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -609,7 +609,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "velocyto_to_h5mu 1.0.0rc2"
+            echo "velocyto_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --input_loom)
@@ -764,14 +764,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -968,7 +968,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -987,8 +987,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/convert_velocyto_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-velocyto_to_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/correction/cellbender_remove_background/.config.vsh.yaml b/target/docker/correction/cellbender_remove_background/.config.vsh.yaml
index 1b0ea91d07c..0c9f06195b8 100644
--- a/target/docker/correction/cellbender_remove_background/.config.vsh.yaml
+++ b/target/docker/correction/cellbender_remove_background/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellbender_remove_background"
   namespace: "correction"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   argument_groups:
   - name: "Inputs"
     arguments:
@@ -552,7 +552,7 @@ platforms:
   image: "nvcr.io/nvidia/cuda:11.8.0-devel-ubuntu22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -634,6 +634,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/correction/cellbender_remove_background"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/correction/cellbender_remove_background/cellbender_remove_background"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/correction/cellbender_remove_background/cellbender_remove_background b/target/docker/correction/cellbender_remove_background/cellbender_remove_background
index 79a40f657d6..e5cafce248c 100755
--- a/target/docker/correction/cellbender_remove_background/cellbender_remove_background
+++ b/target/docker/correction/cellbender_remove_background/cellbender_remove_background
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellbender_remove_background 1.0.0rc2
+# cellbender_remove_background 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellbender_remove_background 1.0.0rc2"
+  echo "cellbender_remove_background 1.0.0-rc2"
   echo ""
   echo "Eliminating technical artifacts from high-throughput single-cell RNA sequencing"
   echo "data."
@@ -686,10 +686,10 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "mudata~=0.2.1" "cellbender~=0.3.0"
 
 LABEL org.opencontainers.image.description="Companion container for running component correction cellbender_remove_background"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -840,7 +840,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellbender_remove_background 1.0.0rc2"
+            echo "cellbender_remove_background 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -1387,14 +1387,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0-rc2'
   exit 0
 fi
 
@@ -1869,7 +1869,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1888,8 +1888,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellbender_remove_background-XXXXXX").py
 function clean_up {
diff --git a/target/docker/correction/cellbender_remove_background_v0_2/.config.vsh.yaml b/target/docker/correction/cellbender_remove_background_v0_2/.config.vsh.yaml
index 5db35cfd382..c40a49c5c83 100644
--- a/target/docker/correction/cellbender_remove_background_v0_2/.config.vsh.yaml
+++ b/target/docker/correction/cellbender_remove_background_v0_2/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellbender_remove_background_v0_2"
   namespace: "correction"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   argument_groups:
   - name: "Inputs"
     arguments:
@@ -332,7 +332,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:22.12-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -410,6 +410,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/correction/cellbender_remove_background_v0_2"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2 b/target/docker/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2
index 058c28a0d1e..98d1b05b951 100755
--- a/target/docker/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2
+++ b/target/docker/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellbender_remove_background_v0_2 1.0.0rc2
+# cellbender_remove_background_v0_2 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellbender_remove_background_v0_2 1.0.0rc2"
+  echo "cellbender_remove_background_v0_2 1.0.0-rc2"
   echo ""
   echo "Eliminating technical artifacts from high-throughput single-cell RNA sequencing"
   echo "data."
@@ -552,10 +552,10 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "anndata~=0.9.1" "mudata~=0.2.3" "pandas!=2.1.2" "muon==0.1.5" "tables==3.8.0" "cellbender==0.2.1"
 
 LABEL org.opencontainers.image.description="Companion container for running component correction cellbender_remove_background_v0_2"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -706,7 +706,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellbender_remove_background_v0_2 1.0.0rc2"
+            echo "cellbender_remove_background_v0_2 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -1049,14 +1049,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0-rc2'
   exit 0
 fi
 
@@ -1395,7 +1395,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1414,8 +1414,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/correction_cellbender_remove_background_v0_2:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellbender_remove_background_v0_2-XXXXXX").py
 function clean_up {
diff --git a/target/docker/dataflow/concat/.config.vsh.yaml b/target/docker/dataflow/concat/.config.vsh.yaml
index d7e7fef7ee9..99c242481b3 100644
--- a/target/docker/dataflow/concat/.config.vsh.yaml
+++ b/target/docker/dataflow/concat/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "concat"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -142,7 +142,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -226,6 +226,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/concat"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/concat/concat"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/dataflow/concat/concat b/target/docker/dataflow/concat/concat
index 84b1c2b86b8..b5c471039e0 100755
--- a/target/docker/dataflow/concat/concat
+++ b/target/docker/dataflow/concat/concat
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# concat 1.0.0rc2
+# concat 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "concat 1.0.0rc2"
+  echo "concat 1.0.0-rc2"
   echo ""
   echo "Concatenates several uni-modal samples in .h5mu files into a single file."
   echo ""
@@ -452,10 +452,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component dataflow concat"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -606,7 +606,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "concat 1.0.0rc2"
+            echo "concat 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -766,14 +766,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concat:1.0.0-rc2'
   exit 0
 fi
 
@@ -983,7 +983,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_concat:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_concat:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1002,8 +1002,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concat:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concat:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concat:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concat:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-concat-XXXXXX").py
 function clean_up {
diff --git a/target/docker/dataflow/concatenate_h5mu/.config.vsh.yaml b/target/docker/dataflow/concatenate_h5mu/.config.vsh.yaml
index 4a717203010..3015b663473 100644
--- a/target/docker/dataflow/concatenate_h5mu/.config.vsh.yaml
+++ b/target/docker/dataflow/concatenate_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "concatenate_h5mu"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -142,7 +142,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -226,6 +226,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/concatenate_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/concatenate_h5mu/concatenate_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/dataflow/concatenate_h5mu/concatenate_h5mu b/target/docker/dataflow/concatenate_h5mu/concatenate_h5mu
index fc7d261947c..57d3fc9ddd5 100755
--- a/target/docker/dataflow/concatenate_h5mu/concatenate_h5mu
+++ b/target/docker/dataflow/concatenate_h5mu/concatenate_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# concatenate_h5mu 1.0.0rc2
+# concatenate_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "concatenate_h5mu 1.0.0rc2"
+  echo "concatenate_h5mu 1.0.0-rc2"
   echo ""
   echo "Concatenates several uni-modal samples in .h5mu files into a single file."
   echo ""
@@ -452,10 +452,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component dataflow concatenate_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -606,7 +606,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "concatenate_h5mu 1.0.0rc2"
+            echo "concatenate_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -766,14 +766,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -983,7 +983,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1002,8 +1002,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_concatenate_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-concatenate_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/dataflow/merge/.config.vsh.yaml b/target/docker/dataflow/merge/.config.vsh.yaml
index 568b3fe4403..b4cb633bd5e 100644
--- a/target/docker/dataflow/merge/.config.vsh.yaml
+++ b/target/docker/dataflow/merge/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "merge"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -96,7 +96,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -179,6 +179,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/merge"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/merge/merge"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/dataflow/merge/merge b/target/docker/dataflow/merge/merge
index 9bb11534aed..b92aca1d19a 100755
--- a/target/docker/dataflow/merge/merge
+++ b/target/docker/dataflow/merge/merge
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# merge 1.0.0rc2
+# merge 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "merge 1.0.0rc2"
+  echo "merge 1.0.0-rc2"
   echo ""
   echo "Combine one or more single-modality .h5mu files together into one .h5mu file."
   echo ""
@@ -424,10 +424,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component dataflow merge"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -578,7 +578,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "merge 1.0.0rc2"
+            echo "merge 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -699,14 +699,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_merge:1.0.0-rc2'
   exit 0
 fi
 
@@ -901,7 +901,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_merge:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_merge:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -920,8 +920,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_merge:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_merge:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_merge:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_merge:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-merge-XXXXXX").py
 function clean_up {
diff --git a/target/docker/dataflow/split_modalities/.config.vsh.yaml b/target/docker/dataflow/split_modalities/.config.vsh.yaml
index e3bb4f42ee8..932a2f5c584 100644
--- a/target/docker/dataflow/split_modalities/.config.vsh.yaml
+++ b/target/docker/dataflow/split_modalities/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "split_modalities"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -123,7 +123,7 @@ platforms:
   image: "python:3.12-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -213,6 +213,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/split_modalities"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/dataflow/split_modalities/split_modalities"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/dataflow/split_modalities/split_modalities b/target/docker/dataflow/split_modalities/split_modalities
index ce9642828d1..2d4ef1ed95a 100755
--- a/target/docker/dataflow/split_modalities/split_modalities
+++ b/target/docker/dataflow/split_modalities/split_modalities
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# split_modalities 1.0.0rc2
+# split_modalities 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "split_modalities 1.0.0rc2"
+  echo "split_modalities 1.0.0-rc2"
   echo ""
   echo "Split the modalities from a single .h5mu multimodal sample into seperate .h5mu"
   echo "files."
@@ -431,10 +431,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component dataflow split_modalities"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -585,7 +585,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "split_modalities 1.0.0rc2"
+            echo "split_modalities 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -708,14 +708,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0-rc2'
   exit 0
 fi
 
@@ -906,7 +906,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -925,8 +925,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dataflow_split_modalities:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-split_modalities-XXXXXX").py
 function clean_up {
diff --git a/target/docker/demux/bcl2fastq/.config.vsh.yaml b/target/docker/demux/bcl2fastq/.config.vsh.yaml
index 30a1a24d4aa..647280680bd 100644
--- a/target/docker/demux/bcl2fastq/.config.vsh.yaml
+++ b/target/docker/demux/bcl2fastq/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bcl2fastq"
   namespace: "demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Toni Verbeiren"
     roles:
@@ -110,7 +110,7 @@ platforms:
   image: "ghcr.io/data-intuitive/bcl2fastq:2.20"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -172,6 +172,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/demux/bcl2fastq"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/demux/bcl2fastq/bcl2fastq"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/demux/bcl2fastq/bcl2fastq b/target/docker/demux/bcl2fastq/bcl2fastq
index 1233b0d234b..e1502c8220f 100755
--- a/target/docker/demux/bcl2fastq/bcl2fastq
+++ b/target/docker/demux/bcl2fastq/bcl2fastq
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# bcl2fastq 1.0.0rc2
+# bcl2fastq 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bcl2fastq 1.0.0rc2"
+  echo "bcl2fastq 1.0.0-rc2"
   echo ""
   echo "Convert bcl files to fastq files using bcl2fastq."
   echo ""
@@ -425,10 +425,10 @@ ENTRYPOINT []
 RUN :
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component demux bcl2fastq"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -579,7 +579,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bcl2fastq 1.0.0rc2"
+            echo "bcl2fastq 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -719,14 +719,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0-rc2'
   exit 0
 fi
 
@@ -923,7 +923,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -942,8 +942,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl2fastq:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-bcl2fastq-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/demux/bcl_convert/.config.vsh.yaml b/target/docker/demux/bcl_convert/.config.vsh.yaml
index af5c4f5716d..199b51f672a 100644
--- a/target/docker/demux/bcl_convert/.config.vsh.yaml
+++ b/target/docker/demux/bcl_convert/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bcl_convert"
   namespace: "demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Toni Verbeiren"
     roles:
@@ -130,7 +130,7 @@ platforms:
   image: "ghcr.io/data-intuitive/bclconvert:3.10"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -192,6 +192,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/demux/bcl_convert"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/demux/bcl_convert/bcl_convert"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/demux/bcl_convert/bcl_convert b/target/docker/demux/bcl_convert/bcl_convert
index 891da5fecd0..b5b0ac28a8b 100755
--- a/target/docker/demux/bcl_convert/bcl_convert
+++ b/target/docker/demux/bcl_convert/bcl_convert
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# bcl_convert 1.0.0rc2
+# bcl_convert 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bcl_convert 1.0.0rc2"
+  echo "bcl_convert 1.0.0-rc2"
   echo ""
   echo "Convert bcl files to fastq files using bcl-convert."
   echo "Information about upgrading from bcl2fastq via"
@@ -432,10 +432,10 @@ ENTRYPOINT []
 RUN :
 LABEL org.opencontainers.image.authors="Toni Verbeiren, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component demux bcl_convert"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -586,7 +586,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bcl_convert 1.0.0rc2"
+            echo "bcl_convert 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -726,14 +726,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0-rc2'
   exit 0
 fi
 
@@ -930,7 +930,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -949,8 +949,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_bcl_convert:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-bcl_convert-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/demux/cellranger_mkfastq/.config.vsh.yaml b/target/docker/demux/cellranger_mkfastq/.config.vsh.yaml
index b6c0abf3c8e..00049859330 100644
--- a/target/docker/demux/cellranger_mkfastq/.config.vsh.yaml
+++ b/target/docker/demux/cellranger_mkfastq/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_mkfastq"
   namespace: "demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -138,7 +138,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -210,6 +210,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/demux/cellranger_mkfastq"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/demux/cellranger_mkfastq/cellranger_mkfastq"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/demux/cellranger_mkfastq/cellranger_mkfastq b/target/docker/demux/cellranger_mkfastq/cellranger_mkfastq
index 4bf3320d55a..e54a267bd3b 100755
--- a/target/docker/demux/cellranger_mkfastq/cellranger_mkfastq
+++ b/target/docker/demux/cellranger_mkfastq/cellranger_mkfastq
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellranger_mkfastq 1.0.0rc2
+# cellranger_mkfastq 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellranger_mkfastq 1.0.0rc2"
+  echo "cellranger_mkfastq 1.0.0-rc2"
   echo ""
   echo "Demultiplex raw sequencing data"
   echo ""
@@ -431,10 +431,10 @@ ENTRYPOINT []
 RUN apt-get update && apt-get upgrade -y
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Samuel D'Souza, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component demux cellranger_mkfastq"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -585,7 +585,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellranger_mkfastq 1.0.0rc2"
+            echo "cellranger_mkfastq 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -696,14 +696,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0-rc2'
   exit 0
 fi
 
@@ -889,7 +889,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -908,8 +908,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/demux_cellranger_mkfastq:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellranger_mkfastq-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/dimred/pca/.config.vsh.yaml b/target/docker/dimred/pca/.config.vsh.yaml
index 850fe84c43a..1c6add91393 100644
--- a/target/docker/dimred/pca/.config.vsh.yaml
+++ b/target/docker/dimred/pca/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "pca"
   namespace: "dimred"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -176,7 +176,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -258,6 +258,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/dimred/pca"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/dimred/pca/pca"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/dimred/pca/pca b/target/docker/dimred/pca/pca
index 1ccff9a7d8a..755e02519c4 100755
--- a/target/docker/dimred/pca/pca
+++ b/target/docker/dimred/pca/pca
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# pca 1.0.0rc2
+# pca 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "pca 1.0.0rc2"
+  echo "pca 1.0.0-rc2"
   echo ""
   echo "Computes PCA coordinates, loadings and variance decomposition. Uses the"
   echo "implementation of scikit-learn [Pedregosa11]."
@@ -465,10 +465,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer"
 LABEL org.opencontainers.image.description="Companion container for running component dimred pca"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -619,7 +619,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "pca 1.0.0rc2"
+            echo "pca 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -813,14 +813,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_pca:1.0.0-rc2'
   exit 0
 fi
 
@@ -1028,7 +1028,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dimred_pca:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dimred_pca:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1047,8 +1047,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_pca:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_pca:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_pca:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_pca:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-pca-XXXXXX").py
 function clean_up {
diff --git a/target/docker/dimred/umap/.config.vsh.yaml b/target/docker/dimred/umap/.config.vsh.yaml
index 9f2cc955b06..8182b5a208f 100644
--- a/target/docker/dimred/umap/.config.vsh.yaml
+++ b/target/docker/dimred/umap/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "umap"
   namespace: "dimred"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -235,7 +235,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -317,6 +317,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/dimred/umap"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/dimred/umap/umap"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/dimred/umap/umap b/target/docker/dimred/umap/umap
index 0c7a920f225..cb33e0f26fa 100755
--- a/target/docker/dimred/umap/umap
+++ b/target/docker/dimred/umap/umap
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# umap 1.0.0rc2
+# umap 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "umap 1.0.0rc2"
+  echo "umap 1.0.0-rc2"
   echo ""
   echo "UMAP (Uniform Manifold Approximation and Projection) is a manifold learning"
   echo "technique suitable for visualizing high-dimensional data. Besides tending to be"
@@ -502,10 +502,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer"
 LABEL org.opencontainers.image.description="Companion container for running component dimred umap"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -656,7 +656,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "umap 1.0.0rc2"
+            echo "umap 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -883,14 +883,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/dimred_umap:1.0.0-rc2'
   exit 0
 fi
 
@@ -1143,7 +1143,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dimred_umap:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/dimred_umap:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1162,8 +1162,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_umap:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_umap:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_umap:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/dimred_umap:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-umap-XXXXXX").py
 function clean_up {
diff --git a/target/docker/download/download_file/.config.vsh.yaml b/target/docker/download/download_file/.config.vsh.yaml
index ec5f70beca2..33883793527 100644
--- a/target/docker/download/download_file/.config.vsh.yaml
+++ b/target/docker/download/download_file/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "download_file"
   namespace: "download"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -82,7 +82,7 @@ platforms:
   image: "bash:5.1.16"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -141,6 +141,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/download/download_file"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/download/download_file/download_file"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/download/download_file/download_file b/target/docker/download/download_file/download_file
index b3b65149bc6..9c543f7fd4b 100755
--- a/target/docker/download/download_file/download_file
+++ b/target/docker/download/download_file/download_file
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# download_file 1.0.0rc2
+# download_file 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "download_file 1.0.0rc2"
+  echo "download_file 1.0.0-rc2"
   echo ""
   echo "Download a file."
   echo ""
@@ -424,10 +424,10 @@ ENTRYPOINT []
 RUN :
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component download download_file"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -578,7 +578,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "download_file 1.0.0rc2"
+            echo "download_file 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -677,14 +677,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/download_download_file:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/download_download_file:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/download_download_file:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/download_download_file:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_download_file:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_download_file:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_download_file:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_download_file:1.0.0-rc2'
   exit 0
 fi
 
@@ -851,7 +851,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/download_download_file:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/download_download_file:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -870,8 +870,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_download_file:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_download_file:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_download_file:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_download_file:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-download_file-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/download/sync_test_resources/.config.vsh.yaml b/target/docker/download/sync_test_resources/.config.vsh.yaml
index eb7f5537540..8acf7a3be98 100644
--- a/target/docker/download/sync_test_resources/.config.vsh.yaml
+++ b/target/docker/download/sync_test_resources/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "sync_test_resources"
   namespace: "download"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -108,7 +108,7 @@ platforms:
   image: "amazon/aws-cli:2.11.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -173,6 +173,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/download/sync_test_resources"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/download/sync_test_resources/sync_test_resources"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/download/sync_test_resources/sync_test_resources b/target/docker/download/sync_test_resources/sync_test_resources
index 3affce81939..ce7b7aa1de1 100755
--- a/target/docker/download/sync_test_resources/sync_test_resources
+++ b/target/docker/download/sync_test_resources/sync_test_resources
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# sync_test_resources 1.0.0rc2
+# sync_test_resources 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "sync_test_resources 1.0.0rc2"
+  echo "sync_test_resources 1.0.0-rc2"
   echo ""
   echo "Synchronise the test resources from s3://openpipelines-data to resources_test"
   echo ""
@@ -438,10 +438,10 @@ RUN yum install -y procps && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component download sync_test_resources"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -592,7 +592,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "sync_test_resources 1.0.0rc2"
+            echo "sync_test_resources 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -725,14 +725,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0-rc2'
   exit 0
 fi
 
@@ -915,7 +915,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -934,8 +934,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/download_sync_test_resources:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-sync_test_resources-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml b/target/docker/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml
index 7a02bf0f80b..fec2ae7ff02 100644
--- a/target/docker/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml
+++ b/target/docker/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "highly_variable_features_scanpy"
   namespace: "feature_annotation"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -273,7 +273,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -352,6 +352,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/feature_annotation/highly_variable_features_scanpy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy b/target/docker/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy
index e0b8a73423b..cf6b2cdc5e0 100755
--- a/target/docker/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy
+++ b/target/docker/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# highly_variable_features_scanpy 1.0.0rc2
+# highly_variable_features_scanpy 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "highly_variable_features_scanpy 1.0.0rc2"
+  echo "highly_variable_features_scanpy 1.0.0-rc2"
   echo ""
   echo "Annotate highly variable features [Satija15] [Zheng17] [Stuart19]."
   echo ""
@@ -524,10 +524,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component feature_annotation highly_variable_features_scanpy"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -678,7 +678,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "highly_variable_features_scanpy 1.0.0rc2"
+            echo "highly_variable_features_scanpy 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -921,14 +921,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0-rc2'
   exit 0
 fi
 
@@ -1186,7 +1186,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1205,8 +1205,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_highly_variable_features_scanpy:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-highly_variable_features_scanpy-XXXXXX").py
 function clean_up {
diff --git a/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml b/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml
index 2d25d9fdc53..bba31164cd1 100644
--- a/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml
+++ b/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "score_genes_cell_cycle_scanpy"
   namespace: "feature_annotation"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     info:
@@ -307,7 +307,7 @@ platforms:
   image: "python:3.11"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -339,6 +339,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/feature_annotation/score_genes_cell_cycle_scanpy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy b/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy
index bafec4c9c87..d01b8448b79 100755
--- a/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy
+++ b/target/docker/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# score_genes_cell_cycle_scanpy 1.0.0rc2
+# score_genes_cell_cycle_scanpy 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "score_genes_cell_cycle_scanpy 1.0.0rc2"
+  echo "score_genes_cell_cycle_scanpy 1.0.0-rc2"
   echo ""
   echo "Calculates the score associated to S phase and G2M phase and annotates the cell"
   echo "cycle phase for each cell, as implemented by scanpy."
@@ -523,10 +523,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component feature_annotation score_genes_cell_cycle_scanpy"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -677,7 +677,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "score_genes_cell_cycle_scanpy 1.0.0rc2"
+            echo "score_genes_cell_cycle_scanpy 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -960,14 +960,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0-rc2'
   exit 0
 fi
 
@@ -1215,7 +1215,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1234,8 +1234,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_cell_cycle_scanpy:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-score_genes_cell_cycle_scanpy-XXXXXX").py
 function clean_up {
diff --git a/target/docker/feature_annotation/score_genes_scanpy/.config.vsh.yaml b/target/docker/feature_annotation/score_genes_scanpy/.config.vsh.yaml
index 2a9ac399a0d..0a3017bceb4 100644
--- a/target/docker/feature_annotation/score_genes_scanpy/.config.vsh.yaml
+++ b/target/docker/feature_annotation/score_genes_scanpy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "score_genes_scanpy"
   namespace: "feature_annotation"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     info:
@@ -256,7 +256,7 @@ platforms:
   image: "python:3.11"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -286,6 +286,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/feature_annotation/score_genes_scanpy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/feature_annotation/score_genes_scanpy/score_genes_scanpy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/feature_annotation/score_genes_scanpy/score_genes_scanpy b/target/docker/feature_annotation/score_genes_scanpy/score_genes_scanpy
index bec5f97a82f..0379ac0a23f 100755
--- a/target/docker/feature_annotation/score_genes_scanpy/score_genes_scanpy
+++ b/target/docker/feature_annotation/score_genes_scanpy/score_genes_scanpy
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# score_genes_scanpy 1.0.0rc2
+# score_genes_scanpy 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "score_genes_scanpy 1.0.0rc2"
+  echo "score_genes_scanpy 1.0.0-rc2"
   echo ""
   echo "Calculates the score of a set of genes for each cell, as implemented by scanpy."
   echo "The score is the average expression of a set of genes subtracted with the"
@@ -494,10 +494,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component feature_annotation score_genes_scanpy"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -648,7 +648,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "score_genes_scanpy 1.0.0rc2"
+            echo "score_genes_scanpy 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -892,14 +892,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0-rc2'
   exit 0
 fi
 
@@ -1143,7 +1143,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1162,8 +1162,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/feature_annotation_score_genes_scanpy:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-score_genes_scanpy-XXXXXX").py
 function clean_up {
diff --git a/target/docker/files/make_params/.config.vsh.yaml b/target/docker/files/make_params/.config.vsh.yaml
index 272d3f32328..9acef402b9e 100644
--- a/target/docker/files/make_params/.config.vsh.yaml
+++ b/target/docker/files/make_params/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "make_params"
   namespace: "files"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -161,7 +161,7 @@ platforms:
   image: "ghcr.io/data-intuitive/randpy:r4.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -223,6 +223,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/files/make_params"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/files/make_params/make_params"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/files/make_params/make_params b/target/docker/files/make_params/make_params
index 8855e8efcd7..d4816aaed41 100755
--- a/target/docker/files/make_params/make_params
+++ b/target/docker/files/make_params/make_params
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# make_params 1.0.0rc2
+# make_params 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "make_params 1.0.0rc2"
+  echo "make_params 1.0.0-rc2"
   echo ""
   echo "Looks for files in a directory and turn it in a params file."
   echo ""
@@ -444,10 +444,10 @@ ENTRYPOINT []
 RUN :
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component files make_params"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -598,7 +598,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "make_params 1.0.0rc2"
+            echo "make_params 1.0.0-rc2"
             exit
             ;;
         --base_dir)
@@ -753,14 +753,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/files_make_params:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/files_make_params:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/files_make_params:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/files_make_params:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/files_make_params:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/files_make_params:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/files_make_params:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/files_make_params:1.0.0-rc2'
   exit 0
 fi
 
@@ -956,7 +956,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/files_make_params:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/files_make_params:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -975,8 +975,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/files_make_params:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/files_make_params:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/files_make_params:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/files_make_params:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-make_params-XXXXXX").R
 function clean_up {
diff --git a/target/docker/filter/delimit_fraction/.config.vsh.yaml b/target/docker/filter/delimit_fraction/.config.vsh.yaml
index 4825e01e7d8..2db3106d1f8 100644
--- a/target/docker/filter/delimit_fraction/.config.vsh.yaml
+++ b/target/docker/filter/delimit_fraction/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "delimit_fraction"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -165,7 +165,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -253,6 +253,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/delimit_fraction"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/delimit_fraction/delimit_fraction"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/delimit_fraction/delimit_fraction b/target/docker/filter/delimit_fraction/delimit_fraction
index f0d996758ad..42789eb6761 100755
--- a/target/docker/filter/delimit_fraction/delimit_fraction
+++ b/target/docker/filter/delimit_fraction/delimit_fraction
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# delimit_fraction 1.0.0rc2
+# delimit_fraction 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "delimit_fraction 1.0.0rc2"
+  echo "delimit_fraction 1.0.0-rc2"
   echo ""
   echo "Turns a column containing values between 0 and 1 into a boolean column based on"
   echo "thresholds."
@@ -460,10 +460,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component filter delimit_fraction"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -614,7 +614,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "delimit_fraction 1.0.0rc2"
+            echo "delimit_fraction 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -780,14 +780,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0-rc2'
   exit 0
 fi
 
@@ -1045,7 +1045,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1064,8 +1064,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_delimit_fraction:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-delimit_fraction-XXXXXX").py
 function clean_up {
diff --git a/target/docker/filter/do_filter/.config.vsh.yaml b/target/docker/filter/do_filter/.config.vsh.yaml
index df32ba88df0..4410502cf7e 100644
--- a/target/docker/filter/do_filter/.config.vsh.yaml
+++ b/target/docker/filter/do_filter/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "do_filter"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -126,7 +126,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -206,6 +206,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/do_filter"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/do_filter/do_filter"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/do_filter/do_filter b/target/docker/filter/do_filter/do_filter
index 7a139eea6de..72179382968 100755
--- a/target/docker/filter/do_filter/do_filter
+++ b/target/docker/filter/do_filter/do_filter
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# do_filter 1.0.0rc2
+# do_filter 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "do_filter 1.0.0rc2"
+  echo "do_filter 1.0.0-rc2"
   echo ""
   echo "Remove observations and variables based on specified .obs and .var columns."
   echo ""
@@ -438,10 +438,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component filter do_filter"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -592,7 +592,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "do_filter 1.0.0rc2"
+            echo "do_filter 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -737,14 +737,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_do_filter:1.0.0-rc2'
   exit 0
 fi
 
@@ -924,7 +924,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_do_filter:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_do_filter:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -943,8 +943,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_do_filter:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_do_filter:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_do_filter:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_do_filter:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-do_filter-XXXXXX").py
 function clean_up {
diff --git a/target/docker/filter/filter_with_counts/.config.vsh.yaml b/target/docker/filter/filter_with_counts/.config.vsh.yaml
index 5b8717b86ca..1abc987ba5e 100644
--- a/target/docker/filter/filter_with_counts/.config.vsh.yaml
+++ b/target/docker/filter/filter_with_counts/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_with_counts"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -219,7 +219,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -299,6 +299,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/filter_with_counts"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/filter_with_counts/filter_with_counts"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/filter_with_counts/filter_with_counts b/target/docker/filter/filter_with_counts/filter_with_counts
index 509bdc3d582..b7d79c94e71 100755
--- a/target/docker/filter/filter_with_counts/filter_with_counts
+++ b/target/docker/filter/filter_with_counts/filter_with_counts
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# filter_with_counts 1.0.0rc2
+# filter_with_counts 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "filter_with_counts 1.0.0rc2"
+  echo "filter_with_counts 1.0.0-rc2"
   echo ""
   echo "Filter scRNA-seq data based on the primary QC metrics."
   echo "This is based on both the UMI counts, the gene counts"
@@ -478,10 +478,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component filter filter_with_counts"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -632,7 +632,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "filter_with_counts 1.0.0rc2"
+            echo "filter_with_counts 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -836,14 +836,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0-rc2'
   exit 0
 fi
 
@@ -1068,7 +1068,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1087,8 +1087,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_counts:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-filter_with_counts-XXXXXX").py
 function clean_up {
diff --git a/target/docker/filter/filter_with_hvg/.config.vsh.yaml b/target/docker/filter/filter_with_hvg/.config.vsh.yaml
index 3c7543d6735..caedd7ebcba 100644
--- a/target/docker/filter/filter_with_hvg/.config.vsh.yaml
+++ b/target/docker/filter/filter_with_hvg/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_with_hvg"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -278,7 +278,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -357,6 +357,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/filter_with_hvg"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/filter_with_hvg/filter_with_hvg"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/filter_with_hvg/filter_with_hvg b/target/docker/filter/filter_with_hvg/filter_with_hvg
index 9ca4a52ee54..6d6e67ba79a 100755
--- a/target/docker/filter/filter_with_hvg/filter_with_hvg
+++ b/target/docker/filter/filter_with_hvg/filter_with_hvg
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# filter_with_hvg 1.0.0rc2
+# filter_with_hvg 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "filter_with_hvg 1.0.0rc2"
+  echo "filter_with_hvg 1.0.0-rc2"
   echo ""
   echo "Annotate highly variable genes [Satija15] [Zheng17] [Stuart19]."
   echo ""
@@ -524,10 +524,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component filter filter_with_hvg"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -678,7 +678,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "filter_with_hvg 1.0.0rc2"
+            echo "filter_with_hvg 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -926,14 +926,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0-rc2'
   exit 0
 fi
 
@@ -1200,7 +1200,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1219,8 +1219,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_hvg:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-filter_with_hvg-XXXXXX").py
 function clean_up {
diff --git a/target/docker/filter/filter_with_scrublet/.config.vsh.yaml b/target/docker/filter/filter_with_scrublet/.config.vsh.yaml
index b60bb7d2ea7..2b4f0745cf4 100644
--- a/target/docker/filter/filter_with_scrublet/.config.vsh.yaml
+++ b/target/docker/filter/filter_with_scrublet/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_with_scrublet"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -232,7 +232,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -319,6 +319,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/filter_with_scrublet"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/filter_with_scrublet/filter_with_scrublet"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/filter_with_scrublet/filter_with_scrublet b/target/docker/filter/filter_with_scrublet/filter_with_scrublet
index d64b0a4a89d..a3bda880030 100755
--- a/target/docker/filter/filter_with_scrublet/filter_with_scrublet
+++ b/target/docker/filter/filter_with_scrublet/filter_with_scrublet
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# filter_with_scrublet 1.0.0rc2
+# filter_with_scrublet 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "filter_with_scrublet 1.0.0rc2"
+  echo "filter_with_scrublet 1.0.0-rc2"
   echo ""
   echo "Doublet detection using the Scrublet method (Wolock, Lopez and Klein, 2019)."
   echo "The method tests for potential doublets by using the expression profiles of"
@@ -504,10 +504,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component filter filter_with_scrublet"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -658,7 +658,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "filter_with_scrublet 1.0.0rc2"
+            echo "filter_with_scrublet 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -867,14 +867,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0-rc2'
   exit 0
 fi
 
@@ -1117,7 +1117,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm --env NUMBA_CACHE_DIR=/tmp ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm --env NUMBA_CACHE_DIR=/tmp ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1136,8 +1136,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm --env NUMBA_CACHE_DIR=/tmp ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_filter_with_scrublet:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-filter_with_scrublet-XXXXXX").py
 function clean_up {
diff --git a/target/docker/filter/intersect_obs/.config.vsh.yaml b/target/docker/filter/intersect_obs/.config.vsh.yaml
index 5545fe042f6..93cf4d97dc2 100644
--- a/target/docker/filter/intersect_obs/.config.vsh.yaml
+++ b/target/docker/filter/intersect_obs/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "intersect_obs"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -113,7 +113,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -193,6 +193,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/intersect_obs"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/intersect_obs/intersect_obs"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/intersect_obs/intersect_obs b/target/docker/filter/intersect_obs/intersect_obs
index b4f6508c654..99d7073b653 100755
--- a/target/docker/filter/intersect_obs/intersect_obs
+++ b/target/docker/filter/intersect_obs/intersect_obs
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# intersect_obs 1.0.0rc2
+# intersect_obs 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "intersect_obs 1.0.0rc2"
+  echo "intersect_obs 1.0.0-rc2"
   echo ""
   echo "Create an intersection between two or more modalities."
   echo ""
@@ -431,10 +431,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont, Isabelle Bergiers"
 LABEL org.opencontainers.image.description="Companion container for running component filter intersect_obs"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -585,7 +585,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "intersect_obs 1.0.0rc2"
+            echo "intersect_obs 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -702,14 +702,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0-rc2'
   exit 0
 fi
 
@@ -888,7 +888,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -907,8 +907,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_intersect_obs:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-intersect_obs-XXXXXX").py
 function clean_up {
diff --git a/target/docker/filter/remove_modality/.config.vsh.yaml b/target/docker/filter/remove_modality/.config.vsh.yaml
index 1212e4ea187..d0d12f5f1fd 100644
--- a/target/docker/filter/remove_modality/.config.vsh.yaml
+++ b/target/docker/filter/remove_modality/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "remove_modality"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -95,7 +95,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -175,6 +175,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/remove_modality"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/remove_modality/remove_modality"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/remove_modality/remove_modality b/target/docker/filter/remove_modality/remove_modality
index 7c9f3bdd492..718afdaae7f 100755
--- a/target/docker/filter/remove_modality/remove_modality
+++ b/target/docker/filter/remove_modality/remove_modality
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# remove_modality 1.0.0rc2
+# remove_modality 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "remove_modality 1.0.0rc2"
+  echo "remove_modality 1.0.0-rc2"
   echo ""
   echo "Remove a modality from a .h5mu file"
   echo ""
@@ -427,10 +427,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component filter remove_modality"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -581,7 +581,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "remove_modality 1.0.0rc2"
+            echo "remove_modality 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -698,14 +698,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0-rc2'
   exit 0
 fi
 
@@ -884,7 +884,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -903,8 +903,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_remove_modality:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-remove_modality-XXXXXX").py
 function clean_up {
diff --git a/target/docker/filter/subset_h5mu/.config.vsh.yaml b/target/docker/filter/subset_h5mu/.config.vsh.yaml
index 8caab1d3c22..c77573bb655 100644
--- a/target/docker/filter/subset_h5mu/.config.vsh.yaml
+++ b/target/docker/filter/subset_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "subset_h5mu"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -111,7 +111,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -191,6 +191,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/subset_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/filter/subset_h5mu/subset_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/filter/subset_h5mu/subset_h5mu b/target/docker/filter/subset_h5mu/subset_h5mu
index 0e25d1ea95c..1b8ebdcef52 100755
--- a/target/docker/filter/subset_h5mu/subset_h5mu
+++ b/target/docker/filter/subset_h5mu/subset_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# subset_h5mu 1.0.0rc2
+# subset_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "subset_h5mu 1.0.0rc2"
+  echo "subset_h5mu 1.0.0-rc2"
   echo ""
   echo "Create a subset of a mudata file by selecting the first number of observations"
   echo ""
@@ -433,10 +433,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component filter subset_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -587,7 +587,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "subset_h5mu 1.0.0rc2"
+            echo "subset_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -709,14 +709,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -902,7 +902,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -921,8 +921,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/filter_subset_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-subset_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/genetic_demux/bcftools/.config.vsh.yaml b/target/docker/genetic_demux/bcftools/.config.vsh.yaml
index 36e48f5d46d..52b4122d2b1 100644
--- a/target/docker/genetic_demux/bcftools/.config.vsh.yaml
+++ b/target/docker/genetic_demux/bcftools/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bcftools"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -94,7 +94,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -179,6 +179,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/bcftools"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/bcftools/bcftools"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/bcftools/bcftools b/target/docker/genetic_demux/bcftools/bcftools
index e46385f7b6e..fe08a916dea 100755
--- a/target/docker/genetic_demux/bcftools/bcftools
+++ b/target/docker/genetic_demux/bcftools/bcftools
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# bcftools 1.0.0rc2
+# bcftools 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bcftools 1.0.0rc2"
+  echo "bcftools 1.0.0-rc2"
   echo ""
   echo "Filter the variants called by freebayes or cellSNP"
   echo ""
@@ -429,10 +429,10 @@ RUN apt-get update && \
 RUN wget https://github.com/samtools/bcftools/releases/download/1.16/bcftools-1.16.tar.bz2 -O bcftools.tar.bz2 && tar -xjvf bcftools.tar.bz2 && cd bcftools-1.16 && make prefix=/usr/local install
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux bcftools"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -583,7 +583,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bcftools 1.0.0rc2"
+            echo "bcftools 1.0.0-rc2"
             exit
             ;;
         --vcf)
@@ -699,14 +699,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0-rc2'
   exit 0
 fi
 
@@ -912,7 +912,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -931,8 +931,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_bcftools:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-bcftools-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/genetic_demux/cellsnp/.config.vsh.yaml b/target/docker/genetic_demux/cellsnp/.config.vsh.yaml
index 5e85d454f42..7f13e00ed6b 100644
--- a/target/docker/genetic_demux/cellsnp/.config.vsh.yaml
+++ b/target/docker/genetic_demux/cellsnp/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellsnp"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -283,7 +283,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -374,6 +374,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/cellsnp"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/cellsnp/cellsnp"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/cellsnp/cellsnp b/target/docker/genetic_demux/cellsnp/cellsnp
index 6c5ce342721..f68f0d09087 100755
--- a/target/docker/genetic_demux/cellsnp/cellsnp
+++ b/target/docker/genetic_demux/cellsnp/cellsnp
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellsnp 1.0.0rc2
+# cellsnp 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellsnp 1.0.0rc2"
+  echo "cellsnp 1.0.0-rc2"
   echo ""
   echo "cellSNP aims to pileup the expressed alleles in single-cell or bulk RNA-seq"
   echo "data. It can be directly used for donor deconvolution in multiplexed single-cell"
@@ -515,10 +515,10 @@ RUN wget https://github.com/samtools/htslib/releases/download/1.16/htslib-1.16.t
 RUN git clone https://github.com/single-cell-genetics/cellsnp-lite.git && cd cellsnp-lite && autoreconf -iv && ./configure --with-htslib=/htslib-1.16 && make && make install
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux cellsnp"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -669,7 +669,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellsnp 1.0.0rc2"
+            echo "cellsnp 1.0.0-rc2"
             exit
             ;;
         --sam_file)
@@ -965,14 +965,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0-rc2'
   exit 0
 fi
 
@@ -1267,7 +1267,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1286,8 +1286,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_cellsnp:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellsnp-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/genetic_demux/demuxlet/.config.vsh.yaml b/target/docker/genetic_demux/demuxlet/.config.vsh.yaml
index 8e2cbef226d..06e4c5a3b83 100644
--- a/target/docker/genetic_demux/demuxlet/.config.vsh.yaml
+++ b/target/docker/genetic_demux/demuxlet/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "demuxlet"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -366,7 +366,7 @@ platforms:
   image: "ubuntu:20.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -459,6 +459,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/demuxlet"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/demuxlet/demuxlet"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/demuxlet/demuxlet b/target/docker/genetic_demux/demuxlet/demuxlet
index 3b74fd9ed1d..0b115b563bb 100755
--- a/target/docker/genetic_demux/demuxlet/demuxlet
+++ b/target/docker/genetic_demux/demuxlet/demuxlet
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# demuxlet 1.0.0rc2
+# demuxlet 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "demuxlet 1.0.0rc2"
+  echo "demuxlet 1.0.0-rc2"
   echo ""
   echo "Demuxlet is a software tool to deconvolute sample identity and identify"
   echo "multiplets when"
@@ -560,10 +560,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
 
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux demuxlet"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -714,7 +714,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "demuxlet 1.0.0rc2"
+            echo "demuxlet 1.0.0-rc2"
             exit
             ;;
         --sam)
@@ -1095,14 +1095,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0-rc2'
   exit 0
 fi
 
@@ -1420,7 +1420,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1439,8 +1439,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_demuxlet:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-demuxlet-XXXXXX").R
 function clean_up {
diff --git a/target/docker/genetic_demux/dsc_pileup/.config.vsh.yaml b/target/docker/genetic_demux/dsc_pileup/.config.vsh.yaml
index 5a187e94d7f..1481044621b 100644
--- a/target/docker/genetic_demux/dsc_pileup/.config.vsh.yaml
+++ b/target/docker/genetic_demux/dsc_pileup/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "dsc_pileup"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -283,7 +283,7 @@ platforms:
   image: "ubuntu:20.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -370,6 +370,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/dsc_pileup"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/dsc_pileup/dsc_pileup"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/dsc_pileup/dsc_pileup b/target/docker/genetic_demux/dsc_pileup/dsc_pileup
index c6a9f3cefd3..7eccb471172 100755
--- a/target/docker/genetic_demux/dsc_pileup/dsc_pileup
+++ b/target/docker/genetic_demux/dsc_pileup/dsc_pileup
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# dsc_pileup 1.0.0rc2
+# dsc_pileup 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "dsc_pileup 1.0.0rc2"
+  echo "dsc_pileup 1.0.0-rc2"
   echo ""
   echo "Dsc-pileup is a software tool to pileup reads and corresponding base quality"
   echo "for each overlapping SNPs and each barcode. By using pileup files,"
@@ -515,10 +515,10 @@ RUN git clone https://github.com/samtools/htslib.git /tmp/htslib && cd /tmp/htsl
 RUN git clone --depth 1 https://github.com/statgen/popscle.git /tmp/popscle && mkdir -p /tmp/popscle/build && cd /tmp/popscle/build && cmake .. && make && cp /tmp/popscle/bin/popscle /usr/local/bin
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux dsc_pileup"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:47Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -669,7 +669,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "dsc_pileup 1.0.0rc2"
+            echo "dsc_pileup 1.0.0-rc2"
             exit
             ;;
         --sam)
@@ -967,14 +967,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0-rc2'
   exit 0
 fi
 
@@ -1256,7 +1256,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1275,8 +1275,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_dsc_pileup:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-dsc_pileup-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/genetic_demux/freebayes/.config.vsh.yaml b/target/docker/genetic_demux/freebayes/.config.vsh.yaml
index 1e36b3fbff8..6a16c2c1172 100644
--- a/target/docker/genetic_demux/freebayes/.config.vsh.yaml
+++ b/target/docker/genetic_demux/freebayes/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "freebayes"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -786,7 +786,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -853,6 +853,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/freebayes"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/freebayes/freebayes"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/freebayes/freebayes b/target/docker/genetic_demux/freebayes/freebayes
index a624a0fad0d..2169a8da8ac 100755
--- a/target/docker/genetic_demux/freebayes/freebayes
+++ b/target/docker/genetic_demux/freebayes/freebayes
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# freebayes 1.0.0rc2
+# freebayes 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "freebayes 1.0.0rc2"
+  echo "freebayes 1.0.0-rc2"
   echo ""
   echo "Freebayes is a Bayesian genetic variant detector designed to"
   echo "find small polymorphisms, specifically SNPs."
@@ -800,10 +800,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux freebayes"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -954,7 +954,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "freebayes 1.0.0rc2"
+            echo "freebayes 1.0.0-rc2"
             exit
             ;;
         --bam)
@@ -1678,14 +1678,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0-rc2'
   exit 0
 fi
 
@@ -2440,7 +2440,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -2459,8 +2459,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freebayes:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-freebayes-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/genetic_demux/freemuxlet/.config.vsh.yaml b/target/docker/genetic_demux/freemuxlet/.config.vsh.yaml
index 6a83892d743..d481d534059 100644
--- a/target/docker/genetic_demux/freemuxlet/.config.vsh.yaml
+++ b/target/docker/genetic_demux/freemuxlet/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "freemuxlet"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -274,7 +274,7 @@ platforms:
   image: "ubuntu:20.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -367,6 +367,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/freemuxlet"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/freemuxlet/freemuxlet"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/freemuxlet/freemuxlet b/target/docker/genetic_demux/freemuxlet/freemuxlet
index c2cadfb231a..17acd3d6128 100755
--- a/target/docker/genetic_demux/freemuxlet/freemuxlet
+++ b/target/docker/genetic_demux/freemuxlet/freemuxlet
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# freemuxlet 1.0.0rc2
+# freemuxlet 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "freemuxlet 1.0.0rc2"
+  echo "freemuxlet 1.0.0-rc2"
   echo ""
   echo "Freemuxlet is a software tool to deconvolute sample identity and identify"
   echo "multiplets when"
@@ -520,10 +520,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
 
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux freemuxlet"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -674,7 +674,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "freemuxlet 1.0.0rc2"
+            echo "freemuxlet 1.0.0-rc2"
             exit
             ;;
         --plp)
@@ -960,14 +960,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0-rc2'
   exit 0
 fi
 
@@ -1271,7 +1271,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1290,8 +1290,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_freemuxlet:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-freemuxlet-XXXXXX").R
 function clean_up {
diff --git a/target/docker/genetic_demux/samtools/.config.vsh.yaml b/target/docker/genetic_demux/samtools/.config.vsh.yaml
index 795f4aaeaa0..ab6f4ae5e28 100644
--- a/target/docker/genetic_demux/samtools/.config.vsh.yaml
+++ b/target/docker/genetic_demux/samtools/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "samtools"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -70,7 +70,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -154,6 +154,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/samtools"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/samtools/samtools"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/samtools/samtools b/target/docker/genetic_demux/samtools/samtools
index 30668bbf423..f66e883984d 100755
--- a/target/docker/genetic_demux/samtools/samtools
+++ b/target/docker/genetic_demux/samtools/samtools
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# samtools 1.0.0rc2
+# samtools 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools 1.0.0rc2"
+  echo "samtools 1.0.0-rc2"
   echo ""
   echo "Filter the BAM according to the instruction of scSplit via Samtools."
   echo ""
@@ -418,10 +418,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux samtools"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -572,7 +572,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools 1.0.0rc2"
+            echo "samtools 1.0.0-rc2"
             exit
             ;;
         --bam)
@@ -661,14 +661,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0-rc2'
   exit 0
 fi
 
@@ -830,7 +830,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -849,8 +849,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_samtools:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-samtools-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/genetic_demux/scsplit/.config.vsh.yaml b/target/docker/genetic_demux/scsplit/.config.vsh.yaml
index 23ace660353..37467567d81 100644
--- a/target/docker/genetic_demux/scsplit/.config.vsh.yaml
+++ b/target/docker/genetic_demux/scsplit/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scsplit"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -210,7 +210,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -293,6 +293,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/scsplit"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/scsplit/scsplit"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/scsplit/scsplit b/target/docker/genetic_demux/scsplit/scsplit
index 9e3f5cfe714..6e4a6e4afdf 100755
--- a/target/docker/genetic_demux/scsplit/scsplit
+++ b/target/docker/genetic_demux/scsplit/scsplit
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scsplit 1.0.0rc2
+# scsplit 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scsplit 1.0.0rc2"
+  echo "scsplit 1.0.0-rc2"
   echo ""
   echo "scsplit is a genotype-free demultiplexing methode of pooled single-cell RNA-seq,"
   echo "using a hidden state model for identifying genetically distinct samples within a"
@@ -480,10 +480,10 @@ RUN pip install --upgrade pip && \
 RUN git clone https://github.com/jon-xu/scSplit && cp scSplit/scSplit /usr/local/bin && rm -rf scSplit
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux scsplit"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -634,7 +634,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scsplit 1.0.0rc2"
+            echo "scsplit 1.0.0-rc2"
             exit
             ;;
         --vcf)
@@ -866,14 +866,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0-rc2'
   exit 0
 fi
 
@@ -1107,7 +1107,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1126,8 +1126,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_scsplit:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-scsplit-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/genetic_demux/souporcell/.config.vsh.yaml b/target/docker/genetic_demux/souporcell/.config.vsh.yaml
index 7e3f9d043a2..62956ad06be 100644
--- a/target/docker/genetic_demux/souporcell/.config.vsh.yaml
+++ b/target/docker/genetic_demux/souporcell/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "souporcell"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -220,7 +220,7 @@ platforms:
   image: "cumulusprod/souporcell:2022.12"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -282,6 +282,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/souporcell"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/souporcell/souporcell"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/souporcell/souporcell b/target/docker/genetic_demux/souporcell/souporcell
index 56bc0ced29a..6c1304667dd 100755
--- a/target/docker/genetic_demux/souporcell/souporcell
+++ b/target/docker/genetic_demux/souporcell/souporcell
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# souporcell 1.0.0rc2
+# souporcell 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "souporcell 1.0.0rc2"
+  echo "souporcell 1.0.0-rc2"
   echo ""
   echo "souporcell is a method for clustering mixed-genotype scRNAseq experiments by"
   echo "individual."
@@ -478,10 +478,10 @@ ENTRYPOINT []
 RUN :
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux souporcell"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -632,7 +632,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "souporcell 1.0.0rc2"
+            echo "souporcell 1.0.0-rc2"
             exit
             ;;
         --fasta)
@@ -869,14 +869,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0-rc2'
   exit 0
 fi
 
@@ -1142,7 +1142,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1161,8 +1161,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_souporcell:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-souporcell-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/genetic_demux/vireo/.config.vsh.yaml b/target/docker/genetic_demux/vireo/.config.vsh.yaml
index ede4bc44d88..9adf511c72a 100644
--- a/target/docker/genetic_demux/vireo/.config.vsh.yaml
+++ b/target/docker/genetic_demux/vireo/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "vireo"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -233,7 +233,7 @@ platforms:
   image: "python:3.10"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -302,6 +302,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/vireo"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/genetic_demux/vireo/vireo"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/genetic_demux/vireo/vireo b/target/docker/genetic_demux/vireo/vireo
index fe65cf82574..ebe40f7e3b5 100755
--- a/target/docker/genetic_demux/vireo/vireo
+++ b/target/docker/genetic_demux/vireo/vireo
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# vireo 1.0.0rc2
+# vireo 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "vireo 1.0.0rc2"
+  echo "vireo 1.0.0-rc2"
   echo ""
   echo "Vireo is primarily designed for demultiplexing cells into donors by modelling of"
   echo "expressed alleles."
@@ -485,10 +485,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Xichen Wu"
 LABEL org.opencontainers.image.description="Companion container for running component genetic_demux vireo"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -639,7 +639,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "vireo 1.0.0rc2"
+            echo "vireo 1.0.0-rc2"
             exit
             ;;
         --cell_data)
@@ -888,14 +888,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0-rc2'
   exit 0
 fi
 
@@ -1165,7 +1165,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1184,8 +1184,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/genetic_demux_vireo:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-vireo-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/integrate/harmonypy/.config.vsh.yaml b/target/docker/integrate/harmonypy/.config.vsh.yaml
index a37652cb91f..2cd7c991c8f 100644
--- a/target/docker/integrate/harmonypy/.config.vsh.yaml
+++ b/target/docker/integrate/harmonypy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "harmonypy"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -162,7 +162,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -245,6 +245,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/harmonypy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/harmonypy/harmonypy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/integrate/harmonypy/harmonypy b/target/docker/integrate/harmonypy/harmonypy
index a43f8288de9..32977935e64 100755
--- a/target/docker/integrate/harmonypy/harmonypy
+++ b/target/docker/integrate/harmonypy/harmonypy
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# harmonypy 1.0.0rc2
+# harmonypy 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "harmonypy 1.0.0rc2"
+  echo "harmonypy 1.0.0-rc2"
   echo ""
   echo "Performs Harmony integration based as described in"
   echo "https://github.com/immunogenomics/harmony. Based on an implementation in python"
@@ -451,10 +451,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component integrate harmonypy"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -605,7 +605,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "harmonypy 1.0.0rc2"
+            echo "harmonypy 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -784,14 +784,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0-rc2'
   exit 0
 fi
 
@@ -1001,7 +1001,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1020,8 +1020,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_harmonypy:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-harmonypy-XXXXXX").py
 function clean_up {
diff --git a/target/docker/integrate/scanorama/.config.vsh.yaml b/target/docker/integrate/scanorama/.config.vsh.yaml
index 37933a216f0..773d3214188 100644
--- a/target/docker/integrate/scanorama/.config.vsh.yaml
+++ b/target/docker/integrate/scanorama/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scanorama"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -204,7 +204,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -288,6 +288,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/scanorama"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/scanorama/scanorama"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/integrate/scanorama/scanorama b/target/docker/integrate/scanorama/scanorama
index 9809f4ce062..511d3c23c74 100755
--- a/target/docker/integrate/scanorama/scanorama
+++ b/target/docker/integrate/scanorama/scanorama
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scanorama 1.0.0rc2
+# scanorama 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scanorama 1.0.0rc2"
+  echo "scanorama 1.0.0-rc2"
   echo ""
   echo "Use Scanorama to integrate different experiments."
   echo ""
@@ -472,10 +472,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component integrate scanorama"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -626,7 +626,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scanorama 1.0.0rc2"
+            echo "scanorama 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -837,14 +837,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0-rc2'
   exit 0
 fi
 
@@ -1082,7 +1082,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1101,8 +1101,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scanorama:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-scanorama-XXXXXX").py
 function clean_up {
diff --git a/target/docker/integrate/scarches/.config.vsh.yaml b/target/docker/integrate/scarches/.config.vsh.yaml
index d6b2ba20f74..6fa62c565ea 100644
--- a/target/docker/integrate/scarches/.config.vsh.yaml
+++ b/target/docker/integrate/scarches/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scarches"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     info:
@@ -255,7 +255,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -336,6 +336,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/scarches"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/scarches/scarches"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/integrate/scarches/scarches b/target/docker/integrate/scarches/scarches
index d577278fc4f..a6a87ff59b7 100755
--- a/target/docker/integrate/scarches/scarches
+++ b/target/docker/integrate/scarches/scarches
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scarches 1.0.0rc2
+# scarches 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scarches 1.0.0rc2"
+  echo "scarches 1.0.0-rc2"
   echo ""
   echo "Performs reference mapping with scArches"
   echo ""
@@ -496,10 +496,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Vladimir Shitov"
 LABEL org.opencontainers.image.description="Companion container for running component integrate scarches"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -650,7 +650,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scarches 1.0.0rc2"
+            echo "scarches 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -911,14 +911,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scarches:1.0.0-rc2'
   exit 0
 fi
 
@@ -1250,7 +1250,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_scarches:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_scarches:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1269,8 +1269,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scarches:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scarches:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scarches:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scarches:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-scarches-XXXXXX").py
 function clean_up {
diff --git a/target/docker/integrate/scvi/.config.vsh.yaml b/target/docker/integrate/scvi/.config.vsh.yaml
index 610e4521771..f9c00c337e5 100644
--- a/target/docker/integrate/scvi/.config.vsh.yaml
+++ b/target/docker/integrate/scvi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scvi"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Malte D. Luecken"
     roles:
@@ -503,7 +503,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -594,6 +594,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/scvi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/scvi/scvi"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/integrate/scvi/scvi b/target/docker/integrate/scvi/scvi
index 4267ca28e80..b44bae47a5d 100755
--- a/target/docker/integrate/scvi/scvi
+++ b/target/docker/integrate/scvi/scvi
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scvi 1.0.0rc2
+# scvi 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scvi 1.0.0rc2"
+  echo "scvi 1.0.0-rc2"
   echo ""
   echo "Performs scvi integration as done in the human lung cell atlas"
   echo "https://github.com/LungCellAtlas/HLCA"
@@ -627,10 +627,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Malte D. Luecken, Dries Schaumont, Matthias Beyens"
 LABEL org.opencontainers.image.description="Companion container for running component integrate scvi"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -781,7 +781,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scvi 1.0.0rc2"
+            echo "scvi 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -1228,14 +1228,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_scvi:1.0.0-rc2'
   exit 0
 fi
 
@@ -1689,7 +1689,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_scvi:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_scvi:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1708,8 +1708,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scvi:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scvi:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scvi:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_scvi:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-scvi-XXXXXX").py
 function clean_up {
diff --git a/target/docker/integrate/totalvi/.config.vsh.yaml b/target/docker/integrate/totalvi/.config.vsh.yaml
index aac806e0f39..977cc1b2b9c 100644
--- a/target/docker/integrate/totalvi/.config.vsh.yaml
+++ b/target/docker/integrate/totalvi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "totalvi"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     info:
@@ -266,7 +266,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -353,6 +353,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/totalvi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/integrate/totalvi/totalvi"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/integrate/totalvi/totalvi b/target/docker/integrate/totalvi/totalvi
index dfb2ccc4b8f..724723c2712 100755
--- a/target/docker/integrate/totalvi/totalvi
+++ b/target/docker/integrate/totalvi/totalvi
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# totalvi 1.0.0rc2
+# totalvi 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "totalvi 1.0.0rc2"
+  echo "totalvi 1.0.0-rc2"
   echo ""
   echo "Performs mapping to the reference by totalvi model:"
   echo "https://docs.scvi-tools.org/en/stable/tutorials/notebooks/scarches_scvi_tools.html#Reference-mapping-with-TOTALVI"
@@ -500,10 +500,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Vladimir Shitov"
 LABEL org.opencontainers.image.description="Companion container for running component integrate totalvi"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -654,7 +654,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "totalvi 1.0.0rc2"
+            echo "totalvi 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -947,14 +947,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0-rc2'
   exit 0
 fi
 
@@ -1213,7 +1213,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1232,8 +1232,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/integrate_totalvi:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-totalvi-XXXXXX").py
 function clean_up {
diff --git a/target/docker/interactive/run_cellxgene/.config.vsh.yaml b/target/docker/interactive/run_cellxgene/.config.vsh.yaml
index aca23c363a8..b24b164fe40 100644
--- a/target/docker/interactive/run_cellxgene/.config.vsh.yaml
+++ b/target/docker/interactive/run_cellxgene/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "run_cellxgene"
   namespace: "interactive"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -55,7 +55,7 @@ platforms:
   image: "ubuntu:focal"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -85,6 +85,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/interactive/run_cellxgene"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/interactive/run_cellxgene/run_cellxgene"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/interactive/run_cellxgene/run_cellxgene b/target/docker/interactive/run_cellxgene/run_cellxgene
index 9d11dd1697d..7eaa10902c6 100755
--- a/target/docker/interactive/run_cellxgene/run_cellxgene
+++ b/target/docker/interactive/run_cellxgene/run_cellxgene
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# run_cellxgene 1.0.0rc2
+# run_cellxgene 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "run_cellxgene 1.0.0rc2"
+  echo "run_cellxgene 1.0.0-rc2"
   echo ""
   echo ""
   echo ""
@@ -415,10 +415,10 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "cellxgene"
 
 LABEL org.opencontainers.image.description="Companion container for running component interactive run_cellxgene"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -569,7 +569,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "run_cellxgene 1.0.0rc2"
+            echo "run_cellxgene 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -670,14 +670,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0-rc2'
   exit 0
 fi
 
@@ -833,7 +833,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -852,8 +852,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm $( echo $VIASH_PAR_PORT | sed 's/..*/-p &:&/' ) ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cellxgene:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-run_cellxgene-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/interactive/run_cirrocumulus/.config.vsh.yaml b/target/docker/interactive/run_cirrocumulus/.config.vsh.yaml
index 42555df5672..40d6b099fff 100644
--- a/target/docker/interactive/run_cirrocumulus/.config.vsh.yaml
+++ b/target/docker/interactive/run_cirrocumulus/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "run_cirrocumulus"
   namespace: "interactive"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -55,7 +55,7 @@ platforms:
   image: "ubuntu:focal"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -87,6 +87,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/interactive/run_cirrocumulus"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/interactive/run_cirrocumulus/run_cirrocumulus"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/interactive/run_cirrocumulus/run_cirrocumulus b/target/docker/interactive/run_cirrocumulus/run_cirrocumulus
index 623e5024031..7850e3d1dc6 100755
--- a/target/docker/interactive/run_cirrocumulus/run_cirrocumulus
+++ b/target/docker/interactive/run_cirrocumulus/run_cirrocumulus
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# run_cirrocumulus 1.0.0rc2
+# run_cirrocumulus 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "run_cirrocumulus 1.0.0rc2"
+  echo "run_cirrocumulus 1.0.0-rc2"
   echo ""
   echo ""
   echo ""
@@ -415,10 +415,10 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "requests" "aiohttp" "cirrocumulus"
 
 LABEL org.opencontainers.image.description="Companion container for running component interactive run_cirrocumulus"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -569,7 +569,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "run_cirrocumulus 1.0.0rc2"
+            echo "run_cirrocumulus 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -670,14 +670,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0-rc2'
   exit 0
 fi
 
@@ -833,7 +833,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -852,8 +852,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm -p $VIASH_PAR_PORT:$VIASH_PAR_PORT ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interactive_run_cirrocumulus:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-run_cirrocumulus-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/interpret/lianapy/.config.vsh.yaml b/target/docker/interpret/lianapy/.config.vsh.yaml
index 5bd9aec9827..534fdfa13d9 100644
--- a/target/docker/interpret/lianapy/.config.vsh.yaml
+++ b/target/docker/interpret/lianapy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "lianapy"
   namespace: "interpret"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Mauro Saporita"
     roles:
@@ -234,7 +234,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -317,6 +317,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/interpret/lianapy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/interpret/lianapy/lianapy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/interpret/lianapy/lianapy b/target/docker/interpret/lianapy/lianapy
index 3ec3845f340..c19cce2853b 100755
--- a/target/docker/interpret/lianapy/lianapy
+++ b/target/docker/interpret/lianapy/lianapy
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# lianapy 1.0.0rc2
+# lianapy 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "lianapy 1.0.0rc2"
+  echo "lianapy 1.0.0-rc2"
   echo ""
   echo "Performs LIANA integration based as described in"
   echo "https://github.com/saezlab/liana-py"
@@ -485,10 +485,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Mauro Saporita, Povilas Gibas"
 LABEL org.opencontainers.image.description="Companion container for running component interpret lianapy"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -639,7 +639,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "lianapy 1.0.0rc2"
+            echo "lianapy 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -861,14 +861,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0-rc2'
   exit 0
 fi
 
@@ -1127,7 +1127,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1146,8 +1146,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/interpret_lianapy:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-lianapy-XXXXXX").py
 function clean_up {
diff --git a/target/docker/labels_transfer/knn/.config.vsh.yaml b/target/docker/labels_transfer/knn/.config.vsh.yaml
index ebaa627a417..478a315d6c8 100644
--- a/target/docker/labels_transfer/knn/.config.vsh.yaml
+++ b/target/docker/labels_transfer/knn/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "knn"
   namespace: "labels_transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     roles:
@@ -286,7 +286,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -384,6 +384,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/labels_transfer/knn"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/labels_transfer/knn/knn"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/labels_transfer/knn/knn b/target/docker/labels_transfer/knn/knn
index d06a767b07a..6a92f3e2323 100755
--- a/target/docker/labels_transfer/knn/knn
+++ b/target/docker/labels_transfer/knn/knn
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# knn 1.0.0rc2
+# knn 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "knn 1.0.0rc2"
+  echo "knn 1.0.0-rc2"
   echo ""
   echo "Performs label transfer from reference to query using KNN classifier"
   echo ""
@@ -483,10 +483,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Vladimir Shitov"
 LABEL org.opencontainers.image.description="Companion container for running component labels_transfer knn"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "knn 1.0.0rc2"
+            echo "knn 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -849,14 +849,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0-rc2'
   exit 0
 fi
 
@@ -1055,7 +1055,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1074,8 +1074,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_knn:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-knn-XXXXXX").py
 function clean_up {
diff --git a/target/docker/labels_transfer/xgboost/.config.vsh.yaml b/target/docker/labels_transfer/xgboost/.config.vsh.yaml
index 9094e8b0e7e..3d90ddcded0 100644
--- a/target/docker/labels_transfer/xgboost/.config.vsh.yaml
+++ b/target/docker/labels_transfer/xgboost/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "xgboost"
   namespace: "labels_transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     roles:
@@ -499,7 +499,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -599,6 +599,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/labels_transfer/xgboost"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/labels_transfer/xgboost/xgboost"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/labels_transfer/xgboost/xgboost b/target/docker/labels_transfer/xgboost/xgboost
index dea0ae0923d..c556da30399 100755
--- a/target/docker/labels_transfer/xgboost/xgboost
+++ b/target/docker/labels_transfer/xgboost/xgboost
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# xgboost 1.0.0rc2
+# xgboost 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "xgboost 1.0.0rc2"
+  echo "xgboost 1.0.0-rc2"
   echo ""
   echo "Performs label transfer from reference to query using XGBoost classifier"
   echo ""
@@ -610,10 +610,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Vladimir Shitov"
 LABEL org.opencontainers.image.description="Companion container for running component labels_transfer xgboost"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -764,7 +764,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "xgboost 1.0.0rc2"
+            echo "xgboost 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -1181,14 +1181,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0-rc2'
   exit 0
 fi
 
@@ -1539,7 +1539,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1558,8 +1558,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/labels_transfer_xgboost:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-xgboost-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/bd_rhapsody/.config.vsh.yaml b/target/docker/mapping/bd_rhapsody/.config.vsh.yaml
index 50738c3c031..4d563f1bc72 100644
--- a/target/docker/mapping/bd_rhapsody/.config.vsh.yaml
+++ b/target/docker/mapping/bd_rhapsody/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bd_rhapsody"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -352,7 +352,7 @@ platforms:
   image: "ghcr.io/data-intuitive/bd_rhapsody:1.10.1"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -420,6 +420,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/bd_rhapsody"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/bd_rhapsody/bd_rhapsody"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/bd_rhapsody/bd_rhapsody b/target/docker/mapping/bd_rhapsody/bd_rhapsody
index dd5b17df1be..fe43fbc3ddf 100755
--- a/target/docker/mapping/bd_rhapsody/bd_rhapsody
+++ b/target/docker/mapping/bd_rhapsody/bd_rhapsody
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# bd_rhapsody 1.0.0rc2
+# bd_rhapsody 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bd_rhapsody 1.0.0rc2"
+  echo "bd_rhapsody 1.0.0-rc2"
   echo ""
   echo "A wrapper for the BD Rhapsody Analysis CWL v1.10.1 pipeline."
   echo ""
@@ -547,10 +547,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component mapping bd_rhapsody"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -701,7 +701,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bd_rhapsody 1.0.0rc2"
+            echo "bd_rhapsody 1.0.0-rc2"
             exit
             ;;
         --mode)
@@ -1046,14 +1046,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0-rc2'
   exit 0
 fi
 
@@ -1427,7 +1427,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1446,8 +1446,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_bd_rhapsody:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-bd_rhapsody-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/cellranger_count/.config.vsh.yaml b/target/docker/mapping/cellranger_count/.config.vsh.yaml
index 0670f1fd01f..f222b345da4 100644
--- a/target/docker/mapping/cellranger_count/.config.vsh.yaml
+++ b/target/docker/mapping/cellranger_count/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_count"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -203,7 +203,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -269,6 +269,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/cellranger_count"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/cellranger_count/cellranger_count"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/cellranger_count/cellranger_count b/target/docker/mapping/cellranger_count/cellranger_count
index 38a2bb69a37..5d91abaf6ed 100755
--- a/target/docker/mapping/cellranger_count/cellranger_count
+++ b/target/docker/mapping/cellranger_count/cellranger_count
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellranger_count 1.0.0rc2
+# cellranger_count 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellranger_count 1.0.0rc2"
+  echo "cellranger_count 1.0.0-rc2"
   echo ""
   echo "Align fastq files using Cell Ranger count."
   echo ""
@@ -466,10 +466,10 @@ ENTRYPOINT []
 RUN apt update && apt upgrade -y
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Samuel D'Souza, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component mapping cellranger_count"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -620,7 +620,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellranger_count 1.0.0rc2"
+            echo "cellranger_count 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -781,14 +781,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0-rc2'
   exit 0
 fi
 
@@ -1032,7 +1032,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1051,8 +1051,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellranger_count-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/mapping/cellranger_count_split/.config.vsh.yaml b/target/docker/mapping/cellranger_count_split/.config.vsh.yaml
index fc1625c1523..3634effef65 100644
--- a/target/docker/mapping/cellranger_count_split/.config.vsh.yaml
+++ b/target/docker/mapping/cellranger_count_split/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_count_split"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -159,7 +159,7 @@ platforms:
   image: "ubuntu:jammy"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -222,6 +222,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/cellranger_count_split"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/cellranger_count_split/cellranger_count_split"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/cellranger_count_split/cellranger_count_split b/target/docker/mapping/cellranger_count_split/cellranger_count_split
index 399dd952016..5b10159d218 100755
--- a/target/docker/mapping/cellranger_count_split/cellranger_count_split
+++ b/target/docker/mapping/cellranger_count_split/cellranger_count_split
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellranger_count_split 1.0.0rc2
+# cellranger_count_split 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellranger_count_split 1.0.0rc2"
+  echo "cellranger_count_split 1.0.0-rc2"
   echo ""
   echo "Split 10x Cell Ranger output directory into separate output fields."
   echo ""
@@ -433,10 +433,10 @@ ENTRYPOINT []
 RUN apt update && apt upgrade -y
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Samuel D'Souza, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component mapping cellranger_count_split"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -587,7 +587,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellranger_count_split 1.0.0rc2"
+            echo "cellranger_count_split 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -731,14 +731,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0-rc2'
   exit 0
 fi
 
@@ -940,7 +940,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -959,8 +959,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_count_split:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellranger_count_split-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/mapping/cellranger_multi/.config.vsh.yaml b/target/docker/mapping/cellranger_multi/.config.vsh.yaml
index 60d1444725f..b0d07bc8bae 100644
--- a/target/docker/mapping/cellranger_multi/.config.vsh.yaml
+++ b/target/docker/mapping/cellranger_multi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_multi"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -498,7 +498,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -584,6 +584,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/cellranger_multi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/cellranger_multi/cellranger_multi"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/cellranger_multi/cellranger_multi b/target/docker/mapping/cellranger_multi/cellranger_multi
index 20c12c7ff41..fbaf596200e 100755
--- a/target/docker/mapping/cellranger_multi/cellranger_multi
+++ b/target/docker/mapping/cellranger_multi/cellranger_multi
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellranger_multi 1.0.0rc2
+# cellranger_multi 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellranger_multi 1.0.0rc2"
+  echo "cellranger_multi 1.0.0-rc2"
   echo ""
   echo "Align fastq files using Cell Ranger multi."
   echo ""
@@ -633,10 +633,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt, Dries De Maeyer"
 LABEL org.opencontainers.image.description="Companion container for running component mapping cellranger_multi"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -787,7 +787,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellranger_multi 1.0.0rc2"
+            echo "cellranger_multi 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -1240,14 +1240,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0-rc2'
   exit 0
 fi
 
@@ -1727,7 +1727,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1746,8 +1746,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_cellranger_multi:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellranger_multi-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/htseq_count/.config.vsh.yaml b/target/docker/mapping/htseq_count/.config.vsh.yaml
index 36fce25be9d..80ab83bba59 100644
--- a/target/docker/mapping/htseq_count/.config.vsh.yaml
+++ b/target/docker/mapping/htseq_count/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "htseq_count"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -346,7 +346,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -421,6 +421,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/htseq_count"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/htseq_count/htseq_count"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/htseq_count/htseq_count b/target/docker/mapping/htseq_count/htseq_count
index 71a19428885..dd64de406d7 100755
--- a/target/docker/mapping/htseq_count/htseq_count
+++ b/target/docker/mapping/htseq_count/htseq_count
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# htseq_count 1.0.0rc2
+# htseq_count 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "htseq_count 1.0.0rc2"
+  echo "htseq_count 1.0.0-rc2"
   echo ""
   echo "Quantify gene expression for subsequent testing for differential expression."
   echo ""
@@ -541,10 +541,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco"
 LABEL org.opencontainers.image.description="Companion container for running component mapping htseq_count"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -695,7 +695,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "htseq_count 1.0.0rc2"
+            echo "htseq_count 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -1017,14 +1017,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0-rc2'
   exit 0
 fi
 
@@ -1366,7 +1366,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1385,8 +1385,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-htseq_count-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/htseq_count_to_h5mu/.config.vsh.yaml b/target/docker/mapping/htseq_count_to_h5mu/.config.vsh.yaml
index ffc5a0b4f07..9fcdf5fda0d 100644
--- a/target/docker/mapping/htseq_count_to_h5mu/.config.vsh.yaml
+++ b/target/docker/mapping/htseq_count_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "htseq_count_to_h5mu"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -137,7 +137,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -213,6 +213,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/htseq_count_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu b/target/docker/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu
index a3f1f495340..e197cd91365 100755
--- a/target/docker/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu
+++ b/target/docker/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# htseq_count_to_h5mu 1.0.0rc2
+# htseq_count_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "htseq_count_to_h5mu 1.0.0rc2"
+  echo "htseq_count_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Convert the htseq table to a h5mu."
   echo ""
@@ -436,10 +436,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco"
 LABEL org.opencontainers.image.description="Companion container for running component mapping htseq_count_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:55Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -590,7 +590,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "htseq_count_to_h5mu 1.0.0rc2"
+            echo "htseq_count_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --input_id)
@@ -730,14 +730,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -947,7 +947,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -966,8 +966,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_htseq_count_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-htseq_count_to_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/multi_star/.config.vsh.yaml b/target/docker/mapping/multi_star/.config.vsh.yaml
index 8bec4a4b2d0..e9275b603fa 100644
--- a/target/docker/mapping/multi_star/.config.vsh.yaml
+++ b/target/docker/mapping/multi_star/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "multi_star"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -2987,7 +2987,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -3083,6 +3083,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/multi_star"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/multi_star/multi_star"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/multi_star/multi_star b/target/docker/mapping/multi_star/multi_star
index 2eb4a56af80..e9ef447cde6 100755
--- a/target/docker/mapping/multi_star/multi_star
+++ b/target/docker/mapping/multi_star/multi_star
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# multi_star 1.0.0rc2
+# multi_star 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "multi_star 1.0.0rc2"
+  echo "multi_star 1.0.0-rc2"
   echo ""
   echo "Align fastq files using STAR."
   echo ""
@@ -1876,10 +1876,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component mapping multi_star"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -2030,7 +2030,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "multi_star 1.0.0rc2"
+            echo "multi_star 1.0.0-rc2"
             exit
             ;;
         --input_id)
@@ -4546,14 +4546,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0-rc2'
   exit 0
 fi
 
@@ -5633,7 +5633,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -5652,8 +5652,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-multi_star-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/multi_star_to_h5mu/.config.vsh.yaml b/target/docker/mapping/multi_star_to_h5mu/.config.vsh.yaml
index b2731065802..b054932ad20 100644
--- a/target/docker/mapping/multi_star_to_h5mu/.config.vsh.yaml
+++ b/target/docker/mapping/multi_star_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "multi_star_to_h5mu"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -109,7 +109,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -183,6 +183,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/multi_star_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/multi_star_to_h5mu/multi_star_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/multi_star_to_h5mu/multi_star_to_h5mu b/target/docker/mapping/multi_star_to_h5mu/multi_star_to_h5mu
index b2b68d24b09..0908ba62978 100755
--- a/target/docker/mapping/multi_star_to_h5mu/multi_star_to_h5mu
+++ b/target/docker/mapping/multi_star_to_h5mu/multi_star_to_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# multi_star_to_h5mu 1.0.0rc2
+# multi_star_to_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "multi_star_to_h5mu 1.0.0rc2"
+  echo "multi_star_to_h5mu 1.0.0-rc2"
   echo ""
   echo "Convert the output of \`multi_star\` to a h5mu."
   echo ""
@@ -425,10 +425,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco"
 LABEL org.opencontainers.image.description="Companion container for running component mapping multi_star_to_h5mu"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -579,7 +579,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "multi_star_to_h5mu 1.0.0rc2"
+            echo "multi_star_to_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -685,14 +685,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0-rc2'
   exit 0
 fi
 
@@ -871,7 +871,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -890,8 +890,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_multi_star_to_h5mu:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-multi_star_to_h5mu-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/samtools_sort/.config.vsh.yaml b/target/docker/mapping/samtools_sort/.config.vsh.yaml
index 7b403d09363..864edad6842 100644
--- a/target/docker/mapping/samtools_sort/.config.vsh.yaml
+++ b/target/docker/mapping/samtools_sort/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "samtools_sort"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -200,7 +200,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -273,6 +273,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/samtools_sort"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/samtools_sort/samtools_sort"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/samtools_sort/samtools_sort b/target/docker/mapping/samtools_sort/samtools_sort
index 4de11dbc03d..eea8967cb9e 100755
--- a/target/docker/mapping/samtools_sort/samtools_sort
+++ b/target/docker/mapping/samtools_sort/samtools_sort
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# samtools_sort 1.0.0rc2
+# samtools_sort 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_sort 1.0.0rc2"
+  echo "samtools_sort 1.0.0-rc2"
   echo ""
   echo "Sort and (optionally) index alignments."
   echo ""
@@ -481,10 +481,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco"
 LABEL org.opencontainers.image.description="Companion container for running component mapping samtools_sort"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -635,7 +635,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_sort 1.0.0rc2"
+            echo "samtools_sort 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -794,14 +794,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0-rc2'
   exit 0
 fi
 
@@ -1029,7 +1029,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1048,8 +1048,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_samtools_sort:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-samtools_sort-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/star_align/.config.vsh.yaml b/target/docker/mapping/star_align/.config.vsh.yaml
index 7d576d83f25..0e3f6b55ffc 100644
--- a/target/docker/mapping/star_align/.config.vsh.yaml
+++ b/target/docker/mapping/star_align/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "star_align"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -2459,7 +2459,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -2538,6 +2538,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/star_align"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/star_align/star_align"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/star_align/star_align b/target/docker/mapping/star_align/star_align
index e308e66dd3d..0c61ad7b450 100755
--- a/target/docker/mapping/star_align/star_align
+++ b/target/docker/mapping/star_align/star_align
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# star_align 1.0.0rc2
+# star_align 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "star_align 1.0.0rc2"
+  echo "star_align 1.0.0-rc2"
   echo ""
   echo "Align fastq files using STAR."
   echo ""
@@ -1804,10 +1804,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component mapping star_align"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:55Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -1958,7 +1958,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "star_align 1.0.0rc2"
+            echo "star_align 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -4324,14 +4324,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align:1.0.0-rc2'
   exit 0
 fi
 
@@ -5259,7 +5259,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_star_align:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_star_align:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -5278,8 +5278,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-star_align-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/star_align_v273a/.config.vsh.yaml b/target/docker/mapping/star_align_v273a/.config.vsh.yaml
index 26808c3b4d0..c16abc7f70f 100644
--- a/target/docker/mapping/star_align_v273a/.config.vsh.yaml
+++ b/target/docker/mapping/star_align_v273a/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "star_align_v273a"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -2459,7 +2459,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -2538,6 +2538,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/star_align_v273a"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/star_align_v273a/star_align_v273a"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/star_align_v273a/star_align_v273a b/target/docker/mapping/star_align_v273a/star_align_v273a
index 671ec13f572..56f8212237f 100755
--- a/target/docker/mapping/star_align_v273a/star_align_v273a
+++ b/target/docker/mapping/star_align_v273a/star_align_v273a
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# star_align_v273a 1.0.0rc2
+# star_align_v273a 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "star_align_v273a 1.0.0rc2"
+  echo "star_align_v273a 1.0.0-rc2"
   echo ""
   echo "Align fastq files using STAR."
   echo ""
@@ -1804,10 +1804,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component mapping star_align_v273a"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -1958,7 +1958,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "star_align_v273a 1.0.0rc2"
+            echo "star_align_v273a 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -4324,14 +4324,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0-rc2'
   exit 0
 fi
 
@@ -5259,7 +5259,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -5278,8 +5278,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_align_v273a:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-star_align_v273a-XXXXXX").py
 function clean_up {
diff --git a/target/docker/mapping/star_build_reference/.config.vsh.yaml b/target/docker/mapping/star_build_reference/.config.vsh.yaml
index 5c62570eb3f..1d4fa1914de 100644
--- a/target/docker/mapping/star_build_reference/.config.vsh.yaml
+++ b/target/docker/mapping/star_build_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "star_build_reference"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -114,7 +114,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -193,6 +193,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/star_build_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/mapping/star_build_reference/star_build_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/mapping/star_build_reference/star_build_reference b/target/docker/mapping/star_build_reference/star_build_reference
index a2da3de5fa1..11fee463bec 100755
--- a/target/docker/mapping/star_build_reference/star_build_reference
+++ b/target/docker/mapping/star_build_reference/star_build_reference
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# star_build_reference 1.0.0rc2
+# star_build_reference 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "star_build_reference 1.0.0rc2"
+  echo "star_build_reference 1.0.0-rc2"
   echo ""
   echo "Create a reference for STAR from a set of fasta files."
   echo ""
@@ -452,10 +452,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component mapping star_build_reference"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -606,7 +606,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "star_build_reference 1.0.0rc2"
+            echo "star_build_reference 1.0.0-rc2"
             exit
             ;;
         --genome_fasta)
@@ -744,14 +744,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0-rc2'
   exit 0
 fi
 
@@ -951,7 +951,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -970,8 +970,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/mapping_star_build_reference:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-star_build_reference-XXXXXX").py
 function clean_up {
diff --git a/target/docker/metadata/add_id/.config.vsh.yaml b/target/docker/metadata/add_id/.config.vsh.yaml
index 5f8b17e7ced..871c04b4f66 100644
--- a/target/docker/metadata/add_id/.config.vsh.yaml
+++ b/target/docker/metadata/add_id/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "add_id"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -119,7 +119,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -209,6 +209,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/add_id"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/add_id/add_id"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/metadata/add_id/add_id b/target/docker/metadata/add_id/add_id
index 7929b6d3b2d..59f41512b28 100755
--- a/target/docker/metadata/add_id/add_id
+++ b/target/docker/metadata/add_id/add_id
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# add_id 1.0.0rc2
+# add_id 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "add_id 1.0.0rc2"
+  echo "add_id 1.0.0-rc2"
   echo ""
   echo "Add id of .obs. Also allows to make .obs_names (the .obs index) unique"
   echo "by prefixing the values with an unique id per .h5mu file."
@@ -437,10 +437,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component metadata add_id"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -591,7 +591,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "add_id 1.0.0rc2"
+            echo "add_id 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -730,14 +730,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_add_id:1.0.0-rc2'
   exit 0
 fi
 
@@ -930,7 +930,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_add_id:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_add_id:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -949,8 +949,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_add_id:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_add_id:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_add_id:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_add_id:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-add_id-XXXXXX").py
 function clean_up {
diff --git a/target/docker/metadata/grep_annotation_column/.config.vsh.yaml b/target/docker/metadata/grep_annotation_column/.config.vsh.yaml
index 05167792338..fda91de1d2e 100644
--- a/target/docker/metadata/grep_annotation_column/.config.vsh.yaml
+++ b/target/docker/metadata/grep_annotation_column/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "grep_annotation_column"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -177,7 +177,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -267,6 +267,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/grep_annotation_column"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/grep_annotation_column/grep_annotation_column"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/metadata/grep_annotation_column/grep_annotation_column b/target/docker/metadata/grep_annotation_column/grep_annotation_column
index fd34e7cf1ea..1b9102c0742 100755
--- a/target/docker/metadata/grep_annotation_column/grep_annotation_column
+++ b/target/docker/metadata/grep_annotation_column/grep_annotation_column
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# grep_annotation_column 1.0.0rc2
+# grep_annotation_column 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "grep_annotation_column 1.0.0rc2"
+  echo "grep_annotation_column 1.0.0-rc2"
   echo ""
   echo "Perform a regex lookup on a column from the annotation matrices .obs or .var."
   echo "The annotation matrix can originate from either a modality, or all modalities"
@@ -470,10 +470,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component metadata grep_annotation_column"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -624,7 +624,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "grep_annotation_column 1.0.0rc2"
+            echo "grep_annotation_column 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -813,14 +813,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0-rc2'
   exit 0
 fi
 
@@ -1019,7 +1019,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1038,8 +1038,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_grep_annotation_column:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-grep_annotation_column-XXXXXX").py
 function clean_up {
diff --git a/target/docker/metadata/join_csv/.config.vsh.yaml b/target/docker/metadata/join_csv/.config.vsh.yaml
index a798b934327..ae1d7d15164 100644
--- a/target/docker/metadata/join_csv/.config.vsh.yaml
+++ b/target/docker/metadata/join_csv/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "join_csv"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -153,7 +153,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -233,6 +233,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/join_csv"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/join_csv/join_csv"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/metadata/join_csv/join_csv b/target/docker/metadata/join_csv/join_csv
index 53731c76c46..df6f6645eeb 100755
--- a/target/docker/metadata/join_csv/join_csv
+++ b/target/docker/metadata/join_csv/join_csv
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# join_csv 1.0.0rc2
+# join_csv 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "join_csv 1.0.0rc2"
+  echo "join_csv 1.0.0-rc2"
   echo ""
   echo "Join a csv containing metadata to the .obs or .var field of a mudata file."
   echo ""
@@ -453,10 +453,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component metadata join_csv"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -607,7 +607,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "join_csv 1.0.0rc2"
+            echo "join_csv 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -774,14 +774,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0-rc2'
   exit 0
 fi
 
@@ -980,7 +980,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -999,8 +999,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_csv:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-join_csv-XXXXXX").py
 function clean_up {
diff --git a/target/docker/metadata/join_uns_to_obs/.config.vsh.yaml b/target/docker/metadata/join_uns_to_obs/.config.vsh.yaml
index ceb31891817..de69ff5f0b8 100644
--- a/target/docker/metadata/join_uns_to_obs/.config.vsh.yaml
+++ b/target/docker/metadata/join_uns_to_obs/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "join_uns_to_obs"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -95,7 +95,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -175,6 +175,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/join_uns_to_obs"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/join_uns_to_obs/join_uns_to_obs"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/metadata/join_uns_to_obs/join_uns_to_obs b/target/docker/metadata/join_uns_to_obs/join_uns_to_obs
index 87ad0fdd9ca..350099a1422 100755
--- a/target/docker/metadata/join_uns_to_obs/join_uns_to_obs
+++ b/target/docker/metadata/join_uns_to_obs/join_uns_to_obs
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# join_uns_to_obs 1.0.0rc2
+# join_uns_to_obs 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "join_uns_to_obs 1.0.0rc2"
+  echo "join_uns_to_obs 1.0.0-rc2"
   echo ""
   echo "Join a data frame of length 1 (1 row index value) in .uns containing metadata to"
   echo "the .obs of a mudata file."
@@ -428,10 +428,10 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "anndata~=0.9.1" "mudata~=0.2.3" "pandas!=2.1.2"
 
 LABEL org.opencontainers.image.description="Companion container for running component metadata join_uns_to_obs"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -582,7 +582,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "join_uns_to_obs 1.0.0rc2"
+            echo "join_uns_to_obs 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -716,14 +716,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0-rc2'
   exit 0
 fi
 
@@ -911,7 +911,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -930,8 +930,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_join_uns_to_obs:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-join_uns_to_obs-XXXXXX").py
 function clean_up {
diff --git a/target/docker/metadata/move_obsm_to_obs/.config.vsh.yaml b/target/docker/metadata/move_obsm_to_obs/.config.vsh.yaml
index de9d4b86771..2591773b835 100644
--- a/target/docker/metadata/move_obsm_to_obs/.config.vsh.yaml
+++ b/target/docker/metadata/move_obsm_to_obs/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "move_obsm_to_obs"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -116,7 +116,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -196,6 +196,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/move_obsm_to_obs"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/metadata/move_obsm_to_obs/move_obsm_to_obs"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/metadata/move_obsm_to_obs/move_obsm_to_obs b/target/docker/metadata/move_obsm_to_obs/move_obsm_to_obs
index 619cc269991..960a58c28b2 100755
--- a/target/docker/metadata/move_obsm_to_obs/move_obsm_to_obs
+++ b/target/docker/metadata/move_obsm_to_obs/move_obsm_to_obs
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# move_obsm_to_obs 1.0.0rc2
+# move_obsm_to_obs 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "move_obsm_to_obs 1.0.0rc2"
+  echo "move_obsm_to_obs 1.0.0-rc2"
   echo ""
   echo "Move a matrix from .obsm to .obs. Newly created columns in .obs will"
   echo "be created from the .obsm key suffixed with an underscore and the name of the"
@@ -436,10 +436,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component metadata move_obsm_to_obs"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -590,7 +590,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "move_obsm_to_obs 1.0.0rc2"
+            echo "move_obsm_to_obs 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -724,14 +724,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0-rc2'
   exit 0
 fi
 
@@ -919,7 +919,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -938,8 +938,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/metadata_move_obsm_to_obs:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-move_obsm_to_obs-XXXXXX").py
 function clean_up {
diff --git a/target/docker/neighbors/bbknn/.config.vsh.yaml b/target/docker/neighbors/bbknn/.config.vsh.yaml
index 00e6ef99acf..4952632556b 100644
--- a/target/docker/neighbors/bbknn/.config.vsh.yaml
+++ b/target/docker/neighbors/bbknn/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bbknn"
   namespace: "neighbors"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -209,7 +209,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -294,6 +294,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/neighbors/bbknn"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/neighbors/bbknn/bbknn"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/neighbors/bbknn/bbknn b/target/docker/neighbors/bbknn/bbknn
index 6efaadc48ec..af695c4cd6b 100755
--- a/target/docker/neighbors/bbknn/bbknn
+++ b/target/docker/neighbors/bbknn/bbknn
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# bbknn 1.0.0rc2
+# bbknn 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bbknn 1.0.0rc2"
+  echo "bbknn 1.0.0-rc2"
   echo ""
   echo "BBKNN network generation"
   echo ""
@@ -478,10 +478,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component neighbors bbknn"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -632,7 +632,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bbknn 1.0.0rc2"
+            echo "bbknn 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -843,14 +843,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0-rc2'
   exit 0
 fi
 
@@ -1073,7 +1073,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1092,8 +1092,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_bbknn:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-bbknn-XXXXXX").py
 function clean_up {
diff --git a/target/docker/neighbors/find_neighbors/.config.vsh.yaml b/target/docker/neighbors/find_neighbors/.config.vsh.yaml
index 53af7ab9bc5..8701282c784 100644
--- a/target/docker/neighbors/find_neighbors/.config.vsh.yaml
+++ b/target/docker/neighbors/find_neighbors/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "find_neighbors"
   namespace: "neighbors"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -232,7 +232,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -314,6 +314,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/neighbors/find_neighbors"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/neighbors/find_neighbors/find_neighbors"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/neighbors/find_neighbors/find_neighbors b/target/docker/neighbors/find_neighbors/find_neighbors
index e8ce4b6e7ca..0da44b19bf8 100755
--- a/target/docker/neighbors/find_neighbors/find_neighbors
+++ b/target/docker/neighbors/find_neighbors/find_neighbors
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# find_neighbors 1.0.0rc2
+# find_neighbors 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "find_neighbors 1.0.0rc2"
+  echo "find_neighbors 1.0.0-rc2"
   echo ""
   echo "Compute a neighborhood graph of observations [McInnes18]."
   echo ""
@@ -483,10 +483,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component neighbors find_neighbors"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:53Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "find_neighbors 1.0.0rc2"
+            echo "find_neighbors 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -837,14 +837,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0-rc2'
   exit 0
 fi
 
@@ -1069,7 +1069,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1088,8 +1088,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/neighbors_find_neighbors:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-find_neighbors-XXXXXX").py
 function clean_up {
diff --git a/target/docker/process_10xh5/filter_10xh5/.config.vsh.yaml b/target/docker/process_10xh5/filter_10xh5/.config.vsh.yaml
index 0b233d9a527..05abe645ce7 100644
--- a/target/docker/process_10xh5/filter_10xh5/.config.vsh.yaml
+++ b/target/docker/process_10xh5/filter_10xh5/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_10xh5"
   namespace: "process_10xh5"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -118,7 +118,7 @@ platforms:
   image: "eddelbuettel/r2u:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -200,6 +200,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/process_10xh5/filter_10xh5"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/process_10xh5/filter_10xh5/filter_10xh5"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/process_10xh5/filter_10xh5/filter_10xh5 b/target/docker/process_10xh5/filter_10xh5/filter_10xh5
index 278e2782416..f54876f2588 100755
--- a/target/docker/process_10xh5/filter_10xh5/filter_10xh5
+++ b/target/docker/process_10xh5/filter_10xh5/filter_10xh5
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# filter_10xh5 1.0.0rc2
+# filter_10xh5 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "filter_10xh5 1.0.0rc2"
+  echo "filter_10xh5 1.0.0-rc2"
   echo ""
   echo "Filter a 10x h5 dataset."
   echo ""
@@ -446,10 +446,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component process_10xh5 filter_10xh5"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:54Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:30Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -600,7 +600,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "filter_10xh5 1.0.0rc2"
+            echo "filter_10xh5 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -733,14 +733,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0-rc2'
   exit 0
 fi
 
@@ -935,7 +935,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -954,8 +954,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/process_10xh5_filter_10xh5:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-filter_10xh5-XXXXXX").R
 function clean_up {
diff --git a/target/docker/qc/calculate_qc_metrics/.config.vsh.yaml b/target/docker/qc/calculate_qc_metrics/.config.vsh.yaml
index 29a9f2b9c7e..34004fdbc46 100644
--- a/target/docker/qc/calculate_qc_metrics/.config.vsh.yaml
+++ b/target/docker/qc/calculate_qc_metrics/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "calculate_qc_metrics"
   namespace: "qc"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -237,7 +237,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -320,6 +320,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/qc/calculate_qc_metrics"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/qc/calculate_qc_metrics/calculate_qc_metrics"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/qc/calculate_qc_metrics/calculate_qc_metrics b/target/docker/qc/calculate_qc_metrics/calculate_qc_metrics
index ade4c9f384b..c52c6799d26 100755
--- a/target/docker/qc/calculate_qc_metrics/calculate_qc_metrics
+++ b/target/docker/qc/calculate_qc_metrics/calculate_qc_metrics
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# calculate_qc_metrics 1.0.0rc2
+# calculate_qc_metrics 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "calculate_qc_metrics 1.0.0rc2"
+  echo "calculate_qc_metrics 1.0.0-rc2"
   echo ""
   echo "Add basic quality control metrics to an .h5mu file."
   echo ""
@@ -516,10 +516,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component qc calculate_qc_metrics"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -670,7 +670,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "calculate_qc_metrics 1.0.0rc2"
+            echo "calculate_qc_metrics 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -903,14 +903,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0-rc2'
   exit 0
 fi
 
@@ -1127,7 +1127,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1146,8 +1146,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_calculate_qc_metrics:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-calculate_qc_metrics-XXXXXX").py
 function clean_up {
diff --git a/target/docker/qc/fastqc/.config.vsh.yaml b/target/docker/qc/fastqc/.config.vsh.yaml
index 97547864ebc..496e6b4d305 100644
--- a/target/docker/qc/fastqc/.config.vsh.yaml
+++ b/target/docker/qc/fastqc/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "fastqc"
   namespace: "qc"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "string"
     name: "--mode"
@@ -92,7 +92,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -159,6 +159,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/qc/fastqc"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/qc/fastqc/fastqc"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/qc/fastqc/fastqc b/target/docker/qc/fastqc/fastqc
index 9b02a81b72a..47b455eee34 100755
--- a/target/docker/qc/fastqc/fastqc
+++ b/target/docker/qc/fastqc/fastqc
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# fastqc 1.0.0rc2
+# fastqc 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "fastqc 1.0.0rc2"
+  echo "fastqc 1.0.0-rc2"
   echo ""
   echo "Fastqc component, please see"
   echo "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. This component can"
@@ -425,10 +425,10 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component qc fastqc"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -579,7 +579,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "fastqc 1.0.0rc2"
+            echo "fastqc 1.0.0-rc2"
             exit
             ;;
         --mode)
@@ -714,14 +714,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_fastqc:1.0.0-rc2'
   exit 0
 fi
 
@@ -911,7 +911,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/qc_fastqc:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/qc_fastqc:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -930,8 +930,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_fastqc:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_fastqc:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_fastqc:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_fastqc:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-fastqc-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/qc/multiqc/.config.vsh.yaml b/target/docker/qc/multiqc/.config.vsh.yaml
index f93ee9c330c..563e479fbd9 100644
--- a/target/docker/qc/multiqc/.config.vsh.yaml
+++ b/target/docker/qc/multiqc/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "multiqc"
   namespace: "qc"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -65,7 +65,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -143,6 +143,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/qc/multiqc"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/qc/multiqc/multiqc"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/qc/multiqc/multiqc b/target/docker/qc/multiqc/multiqc
index c47c349d437..00220b3ee96 100755
--- a/target/docker/qc/multiqc/multiqc
+++ b/target/docker/qc/multiqc/multiqc
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# multiqc 1.0.0rc2
+# multiqc 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "multiqc 1.0.0rc2"
+  echo "multiqc 1.0.0-rc2"
   echo ""
   echo "MultiQC aggregates results from bioinformatics analyses across many samples into"
   echo "a single report."
@@ -418,10 +418,10 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "multiqc"
 
 LABEL org.opencontainers.image.description="Companion container for running component qc multiqc"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:51Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -572,7 +572,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "multiqc 1.0.0rc2"
+            echo "multiqc 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -682,14 +682,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/qc_multiqc:1.0.0-rc2'
   exit 0
 fi
 
@@ -870,7 +870,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/qc_multiqc:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/qc_multiqc:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -889,8 +889,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_multiqc:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_multiqc:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_multiqc:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/qc_multiqc:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-multiqc-XXXXXX").py
 function clean_up {
diff --git a/target/docker/query/cellxgene_census/.config.vsh.yaml b/target/docker/query/cellxgene_census/.config.vsh.yaml
index bfc267f3dc5..953219762ed 100644
--- a/target/docker/query/cellxgene_census/.config.vsh.yaml
+++ b/target/docker/query/cellxgene_census/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellxgene_census"
   namespace: "query"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Matthias Beyens"
     info:
@@ -186,7 +186,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -264,6 +264,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/query/cellxgene_census"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/query/cellxgene_census/cellxgene_census"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/query/cellxgene_census/cellxgene_census b/target/docker/query/cellxgene_census/cellxgene_census
index 08d3811d32a..66c80b35a7b 100755
--- a/target/docker/query/cellxgene_census/cellxgene_census
+++ b/target/docker/query/cellxgene_census/cellxgene_census
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# cellxgene_census 1.0.0rc2
+# cellxgene_census 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellxgene_census 1.0.0rc2"
+  echo "cellxgene_census 1.0.0-rc2"
   echo ""
   echo "Query CellxGene Census or user-specified TileDBSoma object, and eventually fetch"
   echo "cell and gene metadata or/and expression counts."
@@ -467,10 +467,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Matthias Beyens, Dries De Maeyer"
 LABEL org.opencontainers.image.description="Companion container for running component query cellxgene_census"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -621,7 +621,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cellxgene_census 1.0.0rc2"
+            echo "cellxgene_census 1.0.0-rc2"
             exit
             ;;
         --input_database)
@@ -793,14 +793,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0-rc2'
   exit 0
 fi
 
@@ -997,7 +997,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1016,8 +1016,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/query_cellxgene_census:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-cellxgene_census-XXXXXX").py
 function clean_up {
diff --git a/target/docker/reference/build_bdrhap_reference/.config.vsh.yaml b/target/docker/reference/build_bdrhap_reference/.config.vsh.yaml
index d90e2e18a8c..7992a3bc83e 100644
--- a/target/docker/reference/build_bdrhap_reference/.config.vsh.yaml
+++ b/target/docker/reference/build_bdrhap_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "build_bdrhap_reference"
   namespace: "reference"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -107,7 +107,7 @@ platforms:
   image: "bdgenomics/rhapsody:1.10.1"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -188,6 +188,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/reference/build_bdrhap_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/reference/build_bdrhap_reference/build_bdrhap_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/reference/build_bdrhap_reference/build_bdrhap_reference b/target/docker/reference/build_bdrhap_reference/build_bdrhap_reference
index 2f63ce8497d..9acde888316 100755
--- a/target/docker/reference/build_bdrhap_reference/build_bdrhap_reference
+++ b/target/docker/reference/build_bdrhap_reference/build_bdrhap_reference
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# build_bdrhap_reference 1.0.0rc2
+# build_bdrhap_reference 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "build_bdrhap_reference 1.0.0rc2"
+  echo "build_bdrhap_reference 1.0.0-rc2"
   echo ""
   echo "Compile a reference into a STAR index compatible with the BD Rhapsody pipeline."
   echo ""
@@ -421,10 +421,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component reference build_bdrhap_reference"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:55Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -575,7 +575,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "build_bdrhap_reference 1.0.0rc2"
+            echo "build_bdrhap_reference 1.0.0-rc2"
             exit
             ;;
         --genome_fasta)
@@ -675,14 +675,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0-rc2'
   exit 0
 fi
 
@@ -860,7 +860,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -879,8 +879,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_bdrhap_reference:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-build_bdrhap_reference-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/reference/build_cellranger_reference/.config.vsh.yaml b/target/docker/reference/build_cellranger_reference/.config.vsh.yaml
index 7ba5735630e..fd2a1d24ee5 100644
--- a/target/docker/reference/build_cellranger_reference/.config.vsh.yaml
+++ b/target/docker/reference/build_cellranger_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "build_cellranger_reference"
   namespace: "reference"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -107,7 +107,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -188,6 +188,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/reference/build_cellranger_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/reference/build_cellranger_reference/build_cellranger_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/reference/build_cellranger_reference/build_cellranger_reference b/target/docker/reference/build_cellranger_reference/build_cellranger_reference
index a88b012a9ab..6b20f9ac4c0 100755
--- a/target/docker/reference/build_cellranger_reference/build_cellranger_reference
+++ b/target/docker/reference/build_cellranger_reference/build_cellranger_reference
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# build_cellranger_reference 1.0.0rc2
+# build_cellranger_reference 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "build_cellranger_reference 1.0.0rc2"
+  echo "build_cellranger_reference 1.0.0-rc2"
   echo ""
   echo "Build a Cell Ranger-compatible reference folder from user-supplied genome FASTA"
   echo "and gene GTF files. Creates a new folder named after the genome."
@@ -422,10 +422,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component reference build_cellranger_reference"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:55Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -576,7 +576,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "build_cellranger_reference 1.0.0rc2"
+            echo "build_cellranger_reference 1.0.0-rc2"
             exit
             ;;
         --genome_fasta)
@@ -676,14 +676,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0-rc2'
   exit 0
 fi
 
@@ -861,7 +861,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -880,8 +880,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_build_cellranger_reference:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-build_cellranger_reference-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/reference/make_reference/.config.vsh.yaml b/target/docker/reference/make_reference/.config.vsh.yaml
index 6ef13f6f266..1de08766118 100644
--- a/target/docker/reference/make_reference/.config.vsh.yaml
+++ b/target/docker/reference/make_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "make_reference"
   namespace: "reference"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -144,7 +144,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -215,6 +215,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/reference/make_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/reference/make_reference/make_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/reference/make_reference/make_reference b/target/docker/reference/make_reference/make_reference
index d114d493734..d720e321953 100755
--- a/target/docker/reference/make_reference/make_reference
+++ b/target/docker/reference/make_reference/make_reference
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# make_reference 1.0.0rc2
+# make_reference 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "make_reference 1.0.0rc2"
+  echo "make_reference 1.0.0-rc2"
   echo ""
   echo "Preprocess and build a transcriptome reference."
   echo ""
@@ -443,10 +443,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component reference make_reference"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:55Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -597,7 +597,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "make_reference 1.0.0rc2"
+            echo "make_reference 1.0.0-rc2"
             exit
             ;;
         --genome_fasta)
@@ -730,14 +730,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/reference_make_reference:1.0.0-rc2'
   exit 0
 fi
 
@@ -935,7 +935,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/reference_make_reference:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/reference_make_reference:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -954,8 +954,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_make_reference:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_make_reference:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_make_reference:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/reference_make_reference:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-make_reference-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/report/mermaid/.config.vsh.yaml b/target/docker/report/mermaid/.config.vsh.yaml
index a44fd1d5a7e..4b7c66d2260 100644
--- a/target/docker/report/mermaid/.config.vsh.yaml
+++ b/target/docker/report/mermaid/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "mermaid"
   namespace: "report"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -121,7 +121,7 @@ platforms:
   image: "node:20-bullseye"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -188,6 +188,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/report/mermaid"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/report/mermaid/mermaid"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/report/mermaid/mermaid b/target/docker/report/mermaid/mermaid
index e0dcbc0c395..ca9f9041682 100755
--- a/target/docker/report/mermaid/mermaid
+++ b/target/docker/report/mermaid/mermaid
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# mermaid 1.0.0rc2
+# mermaid 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "mermaid 1.0.0rc2"
+  echo "mermaid 1.0.0-rc2"
   echo ""
   echo "Generates a network from mermaid code."
   echo ""
@@ -438,10 +438,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer"
 LABEL org.opencontainers.image.description="Companion container for running component report mermaid"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -592,7 +592,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "mermaid 1.0.0rc2"
+            echo "mermaid 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -737,14 +737,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/report_mermaid:1.0.0-rc2'
   exit 0
 fi
 
@@ -946,7 +946,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/report_mermaid:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/report_mermaid:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -965,8 +965,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/report_mermaid:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/report_mermaid:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/report_mermaid:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/report_mermaid:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-mermaid-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/transfer/publish/.config.vsh.yaml b/target/docker/transfer/publish/.config.vsh.yaml
index aac164eb2ad..5a80498d4f4 100644
--- a/target/docker/transfer/publish/.config.vsh.yaml
+++ b/target/docker/transfer/publish/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "publish"
   namespace: "transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Toni Verbeiren"
     roles:
@@ -69,7 +69,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -128,6 +128,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transfer/publish"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transfer/publish/publish"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transfer/publish/publish b/target/docker/transfer/publish/publish
index d39047a61e2..f9770e8fea8 100755
--- a/target/docker/transfer/publish/publish
+++ b/target/docker/transfer/publish/publish
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# publish 1.0.0rc2
+# publish 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "publish 1.0.0rc2"
+  echo "publish 1.0.0-rc2"
   echo ""
   echo "Publish an artifact and optionally rename with parameters"
   echo ""
@@ -410,10 +410,10 @@ ENTRYPOINT []
 RUN :
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component transfer publish"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:47Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -564,7 +564,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "publish 1.0.0rc2"
+            echo "publish 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -665,14 +665,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transfer_publish:1.0.0-rc2'
   exit 0
 fi
 
@@ -838,7 +838,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transfer_publish:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transfer_publish:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -857,8 +857,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transfer_publish:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transfer_publish:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transfer_publish:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transfer_publish:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-publish-XXXXXX").sh
 function clean_up {
diff --git a/target/docker/transform/clr/.config.vsh.yaml b/target/docker/transform/clr/.config.vsh.yaml
index fdb7d249642..2cd7030006d 100644
--- a/target/docker/transform/clr/.config.vsh.yaml
+++ b/target/docker/transform/clr/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "clr"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -119,7 +119,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -202,6 +202,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/clr"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/clr/clr"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transform/clr/clr b/target/docker/transform/clr/clr
index 8e891a49bf6..5f76169bea0 100755
--- a/target/docker/transform/clr/clr
+++ b/target/docker/transform/clr/clr
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# clr 1.0.0rc2
+# clr 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "clr 1.0.0rc2"
+  echo "clr 1.0.0-rc2"
   echo ""
   echo "Perform CLR normalization on CITE-seq data (Stoeckius et al., 2017)."
   echo ""
@@ -436,10 +436,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component transform clr"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -590,7 +590,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "clr 1.0.0rc2"
+            echo "clr 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -735,14 +735,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_clr:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_clr:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_clr:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_clr:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_clr:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_clr:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_clr:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_clr:1.0.0-rc2'
   exit 0
 fi
 
@@ -926,7 +926,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_clr:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_clr:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -945,8 +945,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_clr:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_clr:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_clr:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_clr:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-clr-XXXXXX").py
 function clean_up {
diff --git a/target/docker/transform/delete_layer/.config.vsh.yaml b/target/docker/transform/delete_layer/.config.vsh.yaml
index 51c27af1d5b..d7fb1711153 100644
--- a/target/docker/transform/delete_layer/.config.vsh.yaml
+++ b/target/docker/transform/delete_layer/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "delete_layer"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -120,7 +120,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -200,6 +200,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/delete_layer"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/delete_layer/delete_layer"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transform/delete_layer/delete_layer b/target/docker/transform/delete_layer/delete_layer
index 445422de638..9e61eef1ef1 100755
--- a/target/docker/transform/delete_layer/delete_layer
+++ b/target/docker/transform/delete_layer/delete_layer
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# delete_layer 1.0.0rc2
+# delete_layer 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "delete_layer 1.0.0rc2"
+  echo "delete_layer 1.0.0-rc2"
   echo ""
   echo "Delete an anndata layer from one or more modalities."
   echo ""
@@ -436,10 +436,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component transform delete_layer"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -590,7 +590,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "delete_layer 1.0.0rc2"
+            echo "delete_layer 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -735,14 +735,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0-rc2'
   exit 0
 fi
 
@@ -939,7 +939,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -958,8 +958,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_delete_layer:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-delete_layer-XXXXXX").py
 function clean_up {
diff --git a/target/docker/transform/log1p/.config.vsh.yaml b/target/docker/transform/log1p/.config.vsh.yaml
index 17666e3a501..9067082aeae 100644
--- a/target/docker/transform/log1p/.config.vsh.yaml
+++ b/target/docker/transform/log1p/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "log1p"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -148,7 +148,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -230,6 +230,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/log1p"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/log1p/log1p"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transform/log1p/log1p b/target/docker/transform/log1p/log1p
index 49bf0f6574a..805553fc7c4 100755
--- a/target/docker/transform/log1p/log1p
+++ b/target/docker/transform/log1p/log1p
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# log1p 1.0.0rc2
+# log1p 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "log1p 1.0.0rc2"
+  echo "log1p 1.0.0-rc2"
   echo ""
   echo "Logarithmize the data matrix. Computes X = log(X + 1), where log denotes the"
   echo "natural logarithm unless a different base is given."
@@ -442,10 +442,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component transform log1p"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -596,7 +596,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "log1p 1.0.0rc2"
+            echo "log1p 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -752,14 +752,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_log1p:1.0.0-rc2'
   exit 0
 fi
 
@@ -949,7 +949,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_log1p:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_log1p:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -968,8 +968,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_log1p:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_log1p:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_log1p:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_log1p:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-log1p-XXXXXX").py
 function clean_up {
diff --git a/target/docker/transform/move_layer/.config.vsh.yaml b/target/docker/transform/move_layer/.config.vsh.yaml
index 2e5329576a9..d3f15289dfc 100644
--- a/target/docker/transform/move_layer/.config.vsh.yaml
+++ b/target/docker/transform/move_layer/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "move_layer"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -103,7 +103,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -183,6 +183,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/move_layer"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/move_layer/move_layer"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transform/move_layer/move_layer b/target/docker/transform/move_layer/move_layer
index 2c95671a480..78771c2f0bf 100755
--- a/target/docker/transform/move_layer/move_layer
+++ b/target/docker/transform/move_layer/move_layer
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# move_layer 1.0.0rc2
+# move_layer 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "move_layer 1.0.0rc2"
+  echo "move_layer 1.0.0-rc2"
   echo ""
   echo "Move a data matrix stored at the .layers or .X attributes in a MuData object to"
   echo "another layer."
@@ -431,10 +431,10 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "anndata~=0.9.1" "mudata~=0.2.3" "pandas!=2.1.2"
 
 LABEL org.opencontainers.image.description="Companion container for running component transform move_layer"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:28Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -585,7 +585,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "move_layer 1.0.0rc2"
+            echo "move_layer 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -730,14 +730,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_move_layer:1.0.0-rc2'
   exit 0
 fi
 
@@ -921,7 +921,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_move_layer:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_move_layer:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -940,8 +940,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_move_layer:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_move_layer:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_move_layer:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_move_layer:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-move_layer-XXXXXX").py
 function clean_up {
diff --git a/target/docker/transform/normalize_total/.config.vsh.yaml b/target/docker/transform/normalize_total/.config.vsh.yaml
index 8117d576e0d..9bf1173ed71 100644
--- a/target/docker/transform/normalize_total/.config.vsh.yaml
+++ b/target/docker/transform/normalize_total/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "normalize_total"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -164,7 +164,7 @@ platforms:
   image: "python:3.10-slim-bullseye"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -247,6 +247,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/normalize_total"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/normalize_total/normalize_total"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transform/normalize_total/normalize_total b/target/docker/transform/normalize_total/normalize_total
index 2cb8be194fb..c337b279e2f 100755
--- a/target/docker/transform/normalize_total/normalize_total
+++ b/target/docker/transform/normalize_total/normalize_total
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# normalize_total 1.0.0rc2
+# normalize_total 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "normalize_total 1.0.0rc2"
+  echo "normalize_total 1.0.0-rc2"
   echo ""
   echo "Normalize counts per cell."
   echo ""
@@ -460,10 +460,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component transform normalize_total"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -614,7 +614,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "normalize_total 1.0.0rc2"
+            echo "normalize_total 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -775,14 +775,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0-rc2'
   exit 0
 fi
 
@@ -984,7 +984,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1003,8 +1003,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_normalize_total:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-normalize_total-XXXXXX").py
 function clean_up {
diff --git a/target/docker/transform/regress_out/.config.vsh.yaml b/target/docker/transform/regress_out/.config.vsh.yaml
index 0d82a557a35..a8415823404 100644
--- a/target/docker/transform/regress_out/.config.vsh.yaml
+++ b/target/docker/transform/regress_out/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "regress_out"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -118,7 +118,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -200,6 +200,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/regress_out"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/regress_out/regress_out"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transform/regress_out/regress_out b/target/docker/transform/regress_out/regress_out
index 23587e763fe..62177875d62 100755
--- a/target/docker/transform/regress_out/regress_out
+++ b/target/docker/transform/regress_out/regress_out
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# regress_out 1.0.0rc2
+# regress_out 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "regress_out 1.0.0rc2"
+  echo "regress_out 1.0.0-rc2"
   echo ""
   echo "Regress out (mostly) unwanted sources of variation."
   echo "Uses simple linear regression. This is inspired by Seurat's regressOut function"
@@ -438,10 +438,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component transform regress_out"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:50Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -592,7 +592,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "regress_out 1.0.0rc2"
+            echo "regress_out 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -726,14 +726,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_regress_out:1.0.0-rc2'
   exit 0
 fi
 
@@ -917,7 +917,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_regress_out:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_regress_out:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -936,8 +936,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_regress_out:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_regress_out:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_regress_out:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_regress_out:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-regress_out-XXXXXX").py
 function clean_up {
diff --git a/target/docker/transform/scale/.config.vsh.yaml b/target/docker/transform/scale/.config.vsh.yaml
index 685a94831f5..2cbf06f227e 100644
--- a/target/docker/transform/scale/.config.vsh.yaml
+++ b/target/docker/transform/scale/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scale"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -125,7 +125,7 @@ platforms:
   image: "python:3.10-slim-bullseye"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -210,6 +210,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/scale"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/transform/scale/scale"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/transform/scale/scale b/target/docker/transform/scale/scale
index f219d28a33f..9f9a67de6e2 100755
--- a/target/docker/transform/scale/scale
+++ b/target/docker/transform/scale/scale
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scale 1.0.0rc2
+# scale 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scale 1.0.0rc2"
+  echo "scale 1.0.0-rc2"
   echo ""
   echo "Scale data to unit variance and zero mean."
   echo ""
@@ -439,10 +439,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component transform scale"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:49Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:29Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -593,7 +593,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scale 1.0.0rc2"
+            echo "scale 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -738,14 +738,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_scale:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_scale:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_scale:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/transform_scale:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_scale:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_scale:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_scale:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/transform_scale:1.0.0-rc2'
   exit 0
 fi
 
@@ -944,7 +944,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_scale:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/transform_scale:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -963,8 +963,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_scale:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_scale:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_scale:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/transform_scale:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-scale-XXXXXX").py
 function clean_up {
diff --git a/target/docker/velocity/scvelo/.config.vsh.yaml b/target/docker/velocity/scvelo/.config.vsh.yaml
index b1eab4fdde4..a4f89df9c2d 100644
--- a/target/docker/velocity/scvelo/.config.vsh.yaml
+++ b/target/docker/velocity/scvelo/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scvelo"
   namespace: "velocity"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -195,7 +195,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -280,6 +280,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/velocity/scvelo"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/velocity/scvelo/scvelo"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/velocity/scvelo/scvelo b/target/docker/velocity/scvelo/scvelo
index 46d46d55109..47f1b68bf01 100755
--- a/target/docker/velocity/scvelo/scvelo
+++ b/target/docker/velocity/scvelo/scvelo
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scvelo 1.0.0rc2
+# scvelo 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scvelo 1.0.0rc2"
+  echo "scvelo 1.0.0-rc2"
   echo ""
   echo "Inputs:"
   echo "    --input"
@@ -479,10 +479,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component velocity scvelo"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:52Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -633,7 +633,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scvelo 1.0.0rc2"
+            echo "scvelo 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -843,14 +843,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0-rc2'
   exit 0
 fi
 
@@ -1097,7 +1097,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -1116,8 +1116,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_scvelo:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-scvelo-XXXXXX").py
 function clean_up {
diff --git a/target/docker/velocity/velocyto/.config.vsh.yaml b/target/docker/velocity/velocyto/.config.vsh.yaml
index 66ce22f7b9d..5c3ca403a0f 100644
--- a/target/docker/velocity/velocyto/.config.vsh.yaml
+++ b/target/docker/velocity/velocyto/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "velocyto"
   namespace: "velocity"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -136,7 +136,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -228,6 +228,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/docker/velocity/velocyto"
   executable: "/home/runner/work/openpipeline/openpipeline/target/docker/velocity/velocyto/velocyto"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/docker/velocity/velocyto/velocyto b/target/docker/velocity/velocyto/velocyto
index 27df9e0eacd..3628e626cae 100755
--- a/target/docker/velocity/velocyto/velocyto
+++ b/target/docker/velocity/velocyto/velocyto
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# velocyto 1.0.0rc2
+# velocyto 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "velocyto 1.0.0rc2"
+  echo "velocyto 1.0.0-rc2"
   echo ""
   echo "Runs the velocity analysis on a BAM file, outputting a loom file."
   echo ""
@@ -445,10 +445,10 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component velocity velocyto"
-LABEL org.opencontainers.image.created="2024-03-11T14:02:48Z"
+LABEL org.opencontainers.image.created="2024-03-11T16:07:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="ac02e9747ee677373b09256e2f648537b9d80692"
-LABEL org.opencontainers.image.version="1.0.0rc2"
+LABEL org.opencontainers.image.revision="4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
+LABEL org.opencontainers.image.version="1.0.0-rc2"
 
 VIASHDOCKER
 }
@@ -599,7 +599,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "velocyto 1.0.0rc2"
+            echo "velocyto 1.0.0-rc2"
             exit
             ;;
         --input)
@@ -756,14 +756,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0-rc2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0rc2' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0-rc2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0rc2'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0rc2'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0-rc2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0-rc2'
   exit 0
 fi
 
@@ -976,7 +976,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0-rc2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -995,8 +995,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0rc2)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0rc2
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0-rc2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/openpipelines-bio/velocity_velocyto:1.0.0-rc2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-velocyto-XXXXXX").sh
 function clean_up {
diff --git a/target/native/compression/compress_h5mu/.config.vsh.yaml b/target/native/compression/compress_h5mu/.config.vsh.yaml
index 107bfdfe8a3..44a3b194368 100644
--- a/target/native/compression/compress_h5mu/.config.vsh.yaml
+++ b/target/native/compression/compress_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "compress_h5mu"
   namespace: "compression"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -89,7 +89,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -171,6 +171,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/compression/compress_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/compression/compress_h5mu/compress_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/compression/compress_h5mu/compress_h5mu b/target/native/compression/compress_h5mu/compress_h5mu
index 40b47983e3f..32ebe49e577 100755
--- a/target/native/compression/compress_h5mu/compress_h5mu
+++ b/target/native/compression/compress_h5mu/compress_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# compress_h5mu 1.0.0rc2
+# compress_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "compress_h5mu 1.0.0rc2"
+  echo "compress_h5mu 1.0.0-rc2"
   echo ""
   echo "Compress a MuData file."
   echo ""
@@ -217,7 +217,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "compress_h5mu 1.0.0rc2"
+            echo "compress_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/compression/tar_extract/.config.vsh.yaml b/target/native/compression/tar_extract/.config.vsh.yaml
index 41304ce3650..da33f7df40b 100644
--- a/target/native/compression/tar_extract/.config.vsh.yaml
+++ b/target/native/compression/tar_extract/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "tar_extract"
   namespace: "compression"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -93,7 +93,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -107,6 +107,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/compression/tar_extract"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/compression/tar_extract/tar_extract"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/compression/tar_extract/tar_extract b/target/native/compression/tar_extract/tar_extract
index f8501f29446..f3ef921530b 100755
--- a/target/native/compression/tar_extract/tar_extract
+++ b/target/native/compression/tar_extract/tar_extract
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# tar_extract 1.0.0rc2
+# tar_extract 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "tar_extract 1.0.0rc2"
+  echo "tar_extract 1.0.0-rc2"
   echo ""
   echo "Extract files from a tar archive"
   echo ""
@@ -222,7 +222,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "tar_extract 1.0.0rc2"
+            echo "tar_extract 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/dataflow/concat/.config.vsh.yaml b/target/native/dataflow/concat/.config.vsh.yaml
index e4e91c75117..40f8ccc1b92 100644
--- a/target/native/dataflow/concat/.config.vsh.yaml
+++ b/target/native/dataflow/concat/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "concat"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -142,7 +142,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -226,6 +226,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/concat"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/concat/concat"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/dataflow/concat/concat b/target/native/dataflow/concat/concat
index 18e63ab3f6b..5d00e0329ae 100755
--- a/target/native/dataflow/concat/concat
+++ b/target/native/dataflow/concat/concat
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# concat 1.0.0rc2
+# concat 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "concat 1.0.0rc2"
+  echo "concat 1.0.0-rc2"
   echo ""
   echo "Concatenates several uni-modal samples in .h5mu files into a single file."
   echo ""
@@ -246,7 +246,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "concat 1.0.0rc2"
+            echo "concat 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/dataflow/concatenate_h5mu/.config.vsh.yaml b/target/native/dataflow/concatenate_h5mu/.config.vsh.yaml
index a94555f7e16..295d8d581d6 100644
--- a/target/native/dataflow/concatenate_h5mu/.config.vsh.yaml
+++ b/target/native/dataflow/concatenate_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "concatenate_h5mu"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -142,7 +142,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -226,6 +226,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/concatenate_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/concatenate_h5mu/concatenate_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/dataflow/concatenate_h5mu/concatenate_h5mu b/target/native/dataflow/concatenate_h5mu/concatenate_h5mu
index 2109f249d36..19d0592d6c2 100755
--- a/target/native/dataflow/concatenate_h5mu/concatenate_h5mu
+++ b/target/native/dataflow/concatenate_h5mu/concatenate_h5mu
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# concatenate_h5mu 1.0.0rc2
+# concatenate_h5mu 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "concatenate_h5mu 1.0.0rc2"
+  echo "concatenate_h5mu 1.0.0-rc2"
   echo ""
   echo "Concatenates several uni-modal samples in .h5mu files into a single file."
   echo ""
@@ -246,7 +246,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "concatenate_h5mu 1.0.0rc2"
+            echo "concatenate_h5mu 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/dataflow/merge/.config.vsh.yaml b/target/native/dataflow/merge/.config.vsh.yaml
index 4a71369eaa8..1cd7236ebed 100644
--- a/target/native/dataflow/merge/.config.vsh.yaml
+++ b/target/native/dataflow/merge/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "merge"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -96,7 +96,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -179,6 +179,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/merge"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/merge/merge"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/dataflow/merge/merge b/target/native/dataflow/merge/merge
index 2a0c2a5b8db..7ae8051459b 100755
--- a/target/native/dataflow/merge/merge
+++ b/target/native/dataflow/merge/merge
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# merge 1.0.0rc2
+# merge 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "merge 1.0.0rc2"
+  echo "merge 1.0.0-rc2"
   echo ""
   echo "Combine one or more single-modality .h5mu files together into one .h5mu file."
   echo ""
@@ -218,7 +218,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "merge 1.0.0rc2"
+            echo "merge 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/dataflow/split_modalities/.config.vsh.yaml b/target/native/dataflow/split_modalities/.config.vsh.yaml
index 174cc0990b9..f745af8e704 100644
--- a/target/native/dataflow/split_modalities/.config.vsh.yaml
+++ b/target/native/dataflow/split_modalities/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "split_modalities"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -123,7 +123,7 @@ platforms:
   image: "python:3.12-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -213,6 +213,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/split_modalities"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/dataflow/split_modalities/split_modalities"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/dataflow/split_modalities/split_modalities b/target/native/dataflow/split_modalities/split_modalities
index 07416b12063..954e84845bf 100755
--- a/target/native/dataflow/split_modalities/split_modalities
+++ b/target/native/dataflow/split_modalities/split_modalities
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# split_modalities 1.0.0rc2
+# split_modalities 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "split_modalities 1.0.0rc2"
+  echo "split_modalities 1.0.0-rc2"
   echo ""
   echo "Split the modalities from a single .h5mu multimodal sample into seperate .h5mu"
   echo "files."
@@ -225,7 +225,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "split_modalities 1.0.0rc2"
+            echo "split_modalities 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/download/sync_test_resources/.config.vsh.yaml b/target/native/download/sync_test_resources/.config.vsh.yaml
index bad4b4d210e..350e20614ea 100644
--- a/target/native/download/sync_test_resources/.config.vsh.yaml
+++ b/target/native/download/sync_test_resources/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "sync_test_resources"
   namespace: "download"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -108,7 +108,7 @@ platforms:
   image: "amazon/aws-cli:2.11.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -173,6 +173,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/download/sync_test_resources"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/download/sync_test_resources/sync_test_resources"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/download/sync_test_resources/sync_test_resources b/target/native/download/sync_test_resources/sync_test_resources
index c68724733d2..2e0d073c125 100755
--- a/target/native/download/sync_test_resources/sync_test_resources
+++ b/target/native/download/sync_test_resources/sync_test_resources
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# sync_test_resources 1.0.0rc2
+# sync_test_resources 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "sync_test_resources 1.0.0rc2"
+  echo "sync_test_resources 1.0.0-rc2"
   echo ""
   echo "Synchronise the test resources from s3://openpipelines-data to resources_test"
   echo ""
@@ -235,7 +235,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "sync_test_resources 1.0.0rc2"
+            echo "sync_test_resources 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml b/target/native/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml
index 38386bf3edb..31eb1dfb943 100644
--- a/target/native/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml
+++ b/target/native/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "score_genes_cell_cycle_scanpy"
   namespace: "feature_annotation"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     info:
@@ -307,7 +307,7 @@ platforms:
   image: "python:3.11"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -339,6 +339,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/feature_annotation/score_genes_cell_cycle_scanpy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy b/target/native/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy
index 617265ffb0a..d6db06d9580 100755
--- a/target/native/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy
+++ b/target/native/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# score_genes_cell_cycle_scanpy 1.0.0rc2
+# score_genes_cell_cycle_scanpy 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "score_genes_cell_cycle_scanpy 1.0.0rc2"
+  echo "score_genes_cell_cycle_scanpy 1.0.0-rc2"
   echo ""
   echo "Calculates the score associated to S phase and G2M phase and annotates the cell"
   echo "cycle phase for each cell, as implemented by scanpy."
@@ -321,7 +321,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "score_genes_cell_cycle_scanpy 1.0.0rc2"
+            echo "score_genes_cell_cycle_scanpy 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/integrate/scarches/.config.vsh.yaml b/target/native/integrate/scarches/.config.vsh.yaml
index 6bd11fd7851..6459822710a 100644
--- a/target/native/integrate/scarches/.config.vsh.yaml
+++ b/target/native/integrate/scarches/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scarches"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     info:
@@ -255,7 +255,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -336,6 +336,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/integrate/scarches"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/integrate/scarches/scarches"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/integrate/scarches/scarches b/target/native/integrate/scarches/scarches
index 34d93f8d36f..475ed70b598 100755
--- a/target/native/integrate/scarches/scarches
+++ b/target/native/integrate/scarches/scarches
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scarches 1.0.0rc2
+# scarches 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scarches 1.0.0rc2"
+  echo "scarches 1.0.0-rc2"
   echo ""
   echo "Performs reference mapping with scArches"
   echo ""
@@ -294,7 +294,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scarches 1.0.0rc2"
+            echo "scarches 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/integrate/totalvi/.config.vsh.yaml b/target/native/integrate/totalvi/.config.vsh.yaml
index 9b94dee8889..a76220a2d9a 100644
--- a/target/native/integrate/totalvi/.config.vsh.yaml
+++ b/target/native/integrate/totalvi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "totalvi"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     info:
@@ -266,7 +266,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -353,6 +353,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/integrate/totalvi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/integrate/totalvi/totalvi"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/integrate/totalvi/totalvi b/target/native/integrate/totalvi/totalvi
index b1da65752d0..c156fe0e649 100755
--- a/target/native/integrate/totalvi/totalvi
+++ b/target/native/integrate/totalvi/totalvi
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# totalvi 1.0.0rc2
+# totalvi 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "totalvi 1.0.0rc2"
+  echo "totalvi 1.0.0-rc2"
   echo ""
   echo "Performs mapping to the reference by totalvi model:"
   echo "https://docs.scvi-tools.org/en/stable/tutorials/notebooks/scarches_scvi_tools.html#Reference-mapping-with-TOTALVI"
@@ -294,7 +294,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "totalvi 1.0.0rc2"
+            echo "totalvi 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/labels_transfer/knn/.config.vsh.yaml b/target/native/labels_transfer/knn/.config.vsh.yaml
index 4190f2f00cc..a920cbb6564 100644
--- a/target/native/labels_transfer/knn/.config.vsh.yaml
+++ b/target/native/labels_transfer/knn/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "knn"
   namespace: "labels_transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     roles:
@@ -286,7 +286,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -384,6 +384,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/labels_transfer/knn"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/labels_transfer/knn/knn"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/labels_transfer/knn/knn b/target/native/labels_transfer/knn/knn
index 72b5b1c456d..a81653a3a1b 100755
--- a/target/native/labels_transfer/knn/knn
+++ b/target/native/labels_transfer/knn/knn
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# knn 1.0.0rc2
+# knn 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "knn 1.0.0rc2"
+  echo "knn 1.0.0-rc2"
   echo ""
   echo "Performs label transfer from reference to query using KNN classifier"
   echo ""
@@ -270,7 +270,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "knn 1.0.0rc2"
+            echo "knn 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/labels_transfer/xgboost/.config.vsh.yaml b/target/native/labels_transfer/xgboost/.config.vsh.yaml
index 80cb644d184..8f889e1efa1 100644
--- a/target/native/labels_transfer/xgboost/.config.vsh.yaml
+++ b/target/native/labels_transfer/xgboost/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "xgboost"
   namespace: "labels_transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     roles:
@@ -499,7 +499,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -599,6 +599,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/labels_transfer/xgboost"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/labels_transfer/xgboost/xgboost"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/labels_transfer/xgboost/xgboost b/target/native/labels_transfer/xgboost/xgboost
index c5f157f08d3..4caf4c7d754 100755
--- a/target/native/labels_transfer/xgboost/xgboost
+++ b/target/native/labels_transfer/xgboost/xgboost
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# xgboost 1.0.0rc2
+# xgboost 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "xgboost 1.0.0rc2"
+  echo "xgboost 1.0.0-rc2"
   echo ""
   echo "Performs label transfer from reference to query using XGBoost classifier"
   echo ""
@@ -397,7 +397,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "xgboost 1.0.0rc2"
+            echo "xgboost 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/metadata/add_id/.config.vsh.yaml b/target/native/metadata/add_id/.config.vsh.yaml
index 17951a62f2c..4a1ed75d58d 100644
--- a/target/native/metadata/add_id/.config.vsh.yaml
+++ b/target/native/metadata/add_id/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "add_id"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -119,7 +119,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -209,6 +209,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/metadata/add_id"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/metadata/add_id/add_id"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/metadata/add_id/add_id b/target/native/metadata/add_id/add_id
index 1a83a51269b..7edc174dd67 100755
--- a/target/native/metadata/add_id/add_id
+++ b/target/native/metadata/add_id/add_id
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# add_id 1.0.0rc2
+# add_id 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "add_id 1.0.0rc2"
+  echo "add_id 1.0.0-rc2"
   echo ""
   echo "Add id of .obs. Also allows to make .obs_names (the .obs index) unique"
   echo "by prefixing the values with an unique id per .h5mu file."
@@ -231,7 +231,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "add_id 1.0.0rc2"
+            echo "add_id 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/metadata/grep_annotation_column/.config.vsh.yaml b/target/native/metadata/grep_annotation_column/.config.vsh.yaml
index ef3a4f9a7ee..1af2f59e5d1 100644
--- a/target/native/metadata/grep_annotation_column/.config.vsh.yaml
+++ b/target/native/metadata/grep_annotation_column/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "grep_annotation_column"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -177,7 +177,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -267,6 +267,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/metadata/grep_annotation_column"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/metadata/grep_annotation_column/grep_annotation_column"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/metadata/grep_annotation_column/grep_annotation_column b/target/native/metadata/grep_annotation_column/grep_annotation_column
index 70533b0a295..d00a0b2c025 100755
--- a/target/native/metadata/grep_annotation_column/grep_annotation_column
+++ b/target/native/metadata/grep_annotation_column/grep_annotation_column
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# grep_annotation_column 1.0.0rc2
+# grep_annotation_column 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "grep_annotation_column 1.0.0rc2"
+  echo "grep_annotation_column 1.0.0-rc2"
   echo ""
   echo "Perform a regex lookup on a column from the annotation matrices .obs or .var."
   echo "The annotation matrix can originate from either a modality, or all modalities"
@@ -264,7 +264,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "grep_annotation_column 1.0.0rc2"
+            echo "grep_annotation_column 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/transform/scale/.config.vsh.yaml b/target/native/transform/scale/.config.vsh.yaml
index f523d79b120..1562f7620e3 100644
--- a/target/native/transform/scale/.config.vsh.yaml
+++ b/target/native/transform/scale/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scale"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -125,7 +125,7 @@ platforms:
   image: "python:3.10-slim-bullseye"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -210,6 +210,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/transform/scale"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/transform/scale/scale"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/transform/scale/scale b/target/native/transform/scale/scale
index 716ce973316..400d2080ce7 100755
--- a/target/native/transform/scale/scale
+++ b/target/native/transform/scale/scale
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scale 1.0.0rc2
+# scale 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scale 1.0.0rc2"
+  echo "scale 1.0.0-rc2"
   echo ""
   echo "Scale data to unit variance and zero mean."
   echo ""
@@ -233,7 +233,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scale 1.0.0rc2"
+            echo "scale 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/velocity/scvelo/.config.vsh.yaml b/target/native/velocity/scvelo/.config.vsh.yaml
index eb6fc074125..ebf75f6a957 100644
--- a/target/native/velocity/scvelo/.config.vsh.yaml
+++ b/target/native/velocity/scvelo/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scvelo"
   namespace: "velocity"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -195,7 +195,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -280,6 +280,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/velocity/scvelo"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/velocity/scvelo/scvelo"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/velocity/scvelo/scvelo b/target/native/velocity/scvelo/scvelo
index 0af7f787025..c933de87c69 100755
--- a/target/native/velocity/scvelo/scvelo
+++ b/target/native/velocity/scvelo/scvelo
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# scvelo 1.0.0rc2
+# scvelo 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scvelo 1.0.0rc2"
+  echo "scvelo 1.0.0-rc2"
   echo ""
   echo "Inputs:"
   echo "    --input"
@@ -273,7 +273,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "scvelo 1.0.0rc2"
+            echo "scvelo 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/native/velocity/velocyto/.config.vsh.yaml b/target/native/velocity/velocyto/.config.vsh.yaml
index 656e4ba4b6a..832b632ea82 100644
--- a/target/native/velocity/velocyto/.config.vsh.yaml
+++ b/target/native/velocity/velocyto/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "velocyto"
   namespace: "velocity"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -136,7 +136,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -228,6 +228,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/native/velocity/velocyto"
   executable: "/home/runner/work/openpipeline/openpipeline/target/native/velocity/velocyto/velocyto"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/native/velocity/velocyto/velocyto b/target/native/velocity/velocyto/velocyto
index 1adf20ce89a..3f215df836e 100755
--- a/target/native/velocity/velocyto/velocyto
+++ b/target/native/velocity/velocyto/velocyto
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# velocyto 1.0.0rc2
+# velocyto 1.0.0-rc2
 # 
 # This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "velocyto 1.0.0rc2"
+  echo "velocyto 1.0.0-rc2"
   echo ""
   echo "Runs the velocity analysis on a BAM file, outputting a loom file."
   echo ""
@@ -232,7 +232,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "velocyto 1.0.0rc2"
+            echo "velocyto 1.0.0-rc2"
             exit
             ;;
         --input)
diff --git a/target/nextflow/annotate/popv/.config.vsh.yaml b/target/nextflow/annotate/popv/.config.vsh.yaml
index d54362e6e03..fc3e71f8c83 100644
--- a/target/nextflow/annotate/popv/.config.vsh.yaml
+++ b/target/nextflow/annotate/popv/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "popv"
   namespace: "annotate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Matthias Beyens"
     roles:
@@ -253,7 +253,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -351,6 +351,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/annotate/popv"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/annotate/popv/popv"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/annotate/popv/main.nf b/target/nextflow/annotate/popv/main.nf
index f8a4886be9d..40a073e6682 100644
--- a/target/nextflow/annotate/popv/main.nf
+++ b/target/nextflow/annotate/popv/main.nf
@@ -1,4 +1,4 @@
-// popv 1.0.0rc2
+// popv 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "popv",
     "namespace" : "annotate",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Matthias Beyens",
@@ -3103,7 +3103,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3224,9 +3224,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/annotate/popv",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3818,7 +3818,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/annotate_popv",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/annotate/popv/nextflow.config b/target/nextflow/annotate/popv/nextflow.config
index c74ea98c801..d075a5ef671 100644
--- a/target/nextflow/annotate/popv/nextflow.config
+++ b/target/nextflow/annotate/popv/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'annotate/popv'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs popular major vote cell typing on single cell sequence data using multiple algorithms. Note that this is a one-shot version of PopV.'
   author = 'Matthias Beyens, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/cluster/leiden/.config.vsh.yaml b/target/nextflow/cluster/leiden/.config.vsh.yaml
index 97dad8604cc..30edb2220f2 100644
--- a/target/nextflow/cluster/leiden/.config.vsh.yaml
+++ b/target/nextflow/cluster/leiden/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "leiden"
   namespace: "cluster"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -147,7 +147,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -230,6 +230,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden/leiden"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/cluster/leiden/main.nf b/target/nextflow/cluster/leiden/main.nf
index e215a2c0252..bbe7a417b0c 100644
--- a/target/nextflow/cluster/leiden/main.nf
+++ b/target/nextflow/cluster/leiden/main.nf
@@ -1,4 +1,4 @@
-// leiden 1.0.0rc2
+// leiden 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "leiden",
     "namespace" : "cluster",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -2958,7 +2958,7 @@ meta = [
       "image" : "python:3.11-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3059,9 +3059,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3640,7 +3640,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/cluster_leiden",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highcpu",
diff --git a/target/nextflow/cluster/leiden/nextflow.config b/target/nextflow/cluster/leiden/nextflow.config
index ab02df8a382..ada7816ba6a 100644
--- a/target/nextflow/cluster/leiden/nextflow.config
+++ b/target/nextflow/cluster/leiden/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'cluster/leiden'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Cluster cells using the [Leiden algorithm] [Traag18] implemented in the [Scanpy framework] [Wolf18]. \nLeiden is an improved version of the [Louvain algorithm] [Blondel08]. \nIt has been proposed for single-cell analysis by [Levine15] [Levine15]. \nThis requires having ran `neighbors/find_neighbors` or `neighbors/bbknn` first.\n\n[Blondel08]: Blondel et al. (2008), Fast unfolding of communities in large networks, J. Stat. Mech.  \n[Levine15]: Levine et al. (2015), Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis, Cell.  \n[Traag18]: Traag et al. (2018), From Louvain to Leiden: guaranteeing well-connected communities arXiv.  \n[Wolf18]: Wolf et al. (2018), Scanpy: large-scale single-cell gene expression data analysis, Genome Biology.  \n'
   author = 'Dries De Maeyer'
 }
diff --git a/target/nextflow/compression/compress_h5mu/.config.vsh.yaml b/target/nextflow/compression/compress_h5mu/.config.vsh.yaml
index 22facd10722..79212bc139b 100644
--- a/target/nextflow/compression/compress_h5mu/.config.vsh.yaml
+++ b/target/nextflow/compression/compress_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "compress_h5mu"
   namespace: "compression"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -89,7 +89,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -171,6 +171,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/compression/compress_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/compression/compress_h5mu/compress_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/compression/compress_h5mu/main.nf b/target/nextflow/compression/compress_h5mu/main.nf
index 64a1c62915d..1bbc1ed0632 100644
--- a/target/nextflow/compression/compress_h5mu/main.nf
+++ b/target/nextflow/compression/compress_h5mu/main.nf
@@ -1,4 +1,4 @@
-// compress_h5mu 1.0.0rc2
+// compress_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "compress_h5mu",
     "namespace" : "compression",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2903,7 +2903,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3005,9 +3005,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/compression/compress_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3455,7 +3455,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/compression_compress_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/compression/compress_h5mu/nextflow.config b/target/nextflow/compression/compress_h5mu/nextflow.config
index ece1bc0b416..d4e4071a759 100644
--- a/target/nextflow/compression/compress_h5mu/nextflow.config
+++ b/target/nextflow/compression/compress_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'compression/compress_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Compress a MuData file. \n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml
index f047c2cfb6b..344e4aaa658 100644
--- a/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_10xh5_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -201,7 +201,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -277,6 +277,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xh5_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_10xh5_to_h5mu/main.nf b/target/nextflow/convert/from_10xh5_to_h5mu/main.nf
index a4744f72d51..3b8a46e1592 100644
--- a/target/nextflow/convert/from_10xh5_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_10xh5_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// from_10xh5_to_h5mu 1.0.0rc2
+// from_10xh5_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_10xh5_to_h5mu",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -3069,7 +3069,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3159,9 +3159,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xh5_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3627,7 +3627,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_10xh5_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_10xh5_to_h5mu/nextflow.config b/target/nextflow/convert/from_10xh5_to_h5mu/nextflow.config
index 555562d2098..2f138a9d9d1 100644
--- a/target/nextflow/convert/from_10xh5_to_h5mu/nextflow.config
+++ b/target/nextflow/convert/from_10xh5_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_10xh5_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Converts a 10x h5 into an h5mu file.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml
index a7ccf8a128b..05f777a180b 100644
--- a/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_10xmtx_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -95,7 +95,7 @@ platforms:
   image: "python:3.8-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -171,6 +171,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xmtx_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf b/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf
index 52d7d664026..2d88d8291e6 100644
--- a/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// from_10xmtx_to_h5mu 1.0.0rc2
+// from_10xmtx_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_10xmtx_to_h5mu",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2913,7 +2913,7 @@ meta = [
       "image" : "python:3.8-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3003,9 +3003,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xmtx_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3437,7 +3437,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_10xmtx_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_10xmtx_to_h5mu/nextflow.config b/target/nextflow/convert/from_10xmtx_to_h5mu/nextflow.config
index e42b0620157..9f06852ac83 100644
--- a/target/nextflow/convert/from_10xmtx_to_h5mu/nextflow.config
+++ b/target/nextflow/convert/from_10xmtx_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_10xmtx_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Converts a 10x mtx into an h5mu file.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml
index 7610c1ad0ef..1ac7c4610e9 100644
--- a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml
+++ b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_bd_to_10x_molecular_barcode_tags"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -95,7 +95,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -162,6 +162,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf
index 24634d074bd..0893d921028 100644
--- a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf
+++ b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf
@@ -1,4 +1,4 @@
-// from_bd_to_10x_molecular_barcode_tags 1.0.0rc2
+// from_bd_to_10x_molecular_barcode_tags 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_bd_to_10x_molecular_barcode_tags",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2907,7 +2907,7 @@ meta = [
       "image" : "ubuntu:latest",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2985,9 +2985,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3441,7 +3441,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_bd_to_10x_molecular_barcode_tags",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/nextflow.config b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/nextflow.config
index 632f9dd2241..c5ce2901be3 100644
--- a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/nextflow.config
+++ b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_bd_to_10x_molecular_barcode_tags'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert the molecular barcode sequence SAM tag from BD format (MA) to 10X format (UB).\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml
index 1478bac0d31..68b5f8f03ae 100644
--- a/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_bdrhap_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -108,7 +108,7 @@ platforms:
   image: "ghcr.io/data-intuitive/randpy:r4.2_py3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -185,6 +185,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bdrhap_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf b/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf
index 8d2fba0ff2e..a60664de51c 100644
--- a/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// from_bdrhap_to_h5mu 1.0.0rc2
+// from_bdrhap_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_bdrhap_to_h5mu",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2931,7 +2931,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/randpy:r4.2_py3.9",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3025,9 +3025,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bdrhap_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3660,7 +3660,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_bdrhap_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_bdrhap_to_h5mu/nextflow.config b/target/nextflow/convert/from_bdrhap_to_h5mu/nextflow.config
index a7c1122275a..b67bf5db5fd 100644
--- a/target/nextflow/convert/from_bdrhap_to_h5mu/nextflow.config
+++ b/target/nextflow/convert/from_bdrhap_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_bdrhap_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert the output of a BD Rhapsody WTA pipeline to a MuData h5 file.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml
index 24f7a85d66d..f4efc608f88 100644
--- a/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_cellranger_multi_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -111,7 +111,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -195,6 +195,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_cellranger_multi_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf b/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf
index 381116e011b..1b9a0002835 100644
--- a/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// from_cellranger_multi_to_h5mu 1.0.0rc2
+// from_cellranger_multi_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_cellranger_multi_to_h5mu",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2926,7 +2926,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3028,9 +3028,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_cellranger_multi_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3607,7 +3607,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_cellranger_multi_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_cellranger_multi_to_h5mu/nextflow.config b/target/nextflow/convert/from_cellranger_multi_to_h5mu/nextflow.config
index 3b37e4f07c1..065d554b998 100644
--- a/target/nextflow/convert/from_cellranger_multi_to_h5mu/nextflow.config
+++ b/target/nextflow/convert/from_cellranger_multi_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_cellranger_multi_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Converts the output from cellranger multi to a single .h5mu file.\nBy default, will map the following library type names to modality names:\n  - Gene Expression: rna\n  - Peaks: atac\n  - Antibody Capture: prot\n  - VDJ: vdj\n  - VDJ-T: vdj_t\n  - VDJ-B: vdj_b\n  - CRISPR Guide Capture: crispr\n  - Multiplexing Capture: hashing\n\nOther library types have their whitepace removed and dashes replaced by\nunderscores to generate the modality name.\n\nCurrently does not allow parsing the output from cell barcode demultiplexing.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml
index d2b1db0d19a..344c5c3f95c 100644
--- a/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_h5ad_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -101,7 +101,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -181,6 +181,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5ad_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_h5ad_to_h5mu/main.nf b/target/nextflow/convert/from_h5ad_to_h5mu/main.nf
index c0c7c8ec95b..2a6556faee4 100644
--- a/target/nextflow/convert/from_h5ad_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_h5ad_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// from_h5ad_to_h5mu 1.0.0rc2
+// from_h5ad_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_h5ad_to_h5mu",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -2919,7 +2919,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3017,9 +3017,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5ad_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3455,7 +3455,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_h5ad_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_h5ad_to_h5mu/nextflow.config b/target/nextflow/convert/from_h5ad_to_h5mu/nextflow.config
index 9559d70c7bf..d5dc78428a7 100644
--- a/target/nextflow/convert/from_h5ad_to_h5mu/nextflow.config
+++ b/target/nextflow/convert/from_h5ad_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_h5ad_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Converts a single layer h5ad file into a single MuData object\n'
   author = 'Dries De Maeyer'
 }
diff --git a/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml b/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml
index 47776d3fe66..3c79daff365 100644
--- a/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml
+++ b/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_h5mu_to_h5ad"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -106,7 +106,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -186,6 +186,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5mu_to_h5ad"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_h5mu_to_h5ad/main.nf b/target/nextflow/convert/from_h5mu_to_h5ad/main.nf
index eb8033dd212..b14a662c816 100644
--- a/target/nextflow/convert/from_h5mu_to_h5ad/main.nf
+++ b/target/nextflow/convert/from_h5mu_to_h5ad/main.nf
@@ -1,4 +1,4 @@
-// from_h5mu_to_h5ad 1.0.0rc2
+// from_h5mu_to_h5ad 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_h5mu_to_h5ad",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2926,7 +2926,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3024,9 +3024,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5mu_to_h5ad",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3451,7 +3451,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_h5mu_to_h5ad",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_h5mu_to_h5ad/nextflow.config b/target/nextflow/convert/from_h5mu_to_h5ad/nextflow.config
index d22101cb611..da0fd59da7b 100644
--- a/target/nextflow/convert/from_h5mu_to_h5ad/nextflow.config
+++ b/target/nextflow/convert/from_h5mu_to_h5ad/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_h5mu_to_h5ad'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Converts a h5mu file into a h5ad file.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml b/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml
index 8a5b8316713..af66c435943 100644
--- a/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml
+++ b/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "from_h5mu_to_seurat"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -87,7 +87,7 @@ platforms:
   image: "eddelbuettel/r2u:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -186,6 +186,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5mu_to_seurat"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5mu_to_seurat/from_h5mu_to_seurat"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/from_h5mu_to_seurat/main.nf b/target/nextflow/convert/from_h5mu_to_seurat/main.nf
index 554dc3472aa..d9a2de09cdb 100644
--- a/target/nextflow/convert/from_h5mu_to_seurat/main.nf
+++ b/target/nextflow/convert/from_h5mu_to_seurat/main.nf
@@ -1,4 +1,4 @@
-// from_h5mu_to_seurat 1.0.0rc2
+// from_h5mu_to_seurat 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "from_h5mu_to_seurat",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2893,7 +2893,7 @@ meta = [
       "image" : "eddelbuettel/r2u:22.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3021,9 +3021,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5mu_to_seurat",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3427,7 +3427,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_from_h5mu_to_seurat",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/from_h5mu_to_seurat/nextflow.config b/target/nextflow/convert/from_h5mu_to_seurat/nextflow.config
index 150ddadff9e..73b1b679405 100644
--- a/target/nextflow/convert/from_h5mu_to_seurat/nextflow.config
+++ b/target/nextflow/convert/from_h5mu_to_seurat/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/from_h5mu_to_seurat'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Converts an h5mu file into a Seurat file.\n\nRestrictions:\n  - Only the intersection of cells is currently loaded into the Seurat object due to the object structure limitation.\n  - Multimodal embeddings (global .obsm slot) are loaded with the assay.used field set to the default assay.\n  - Embeddings names are changed in order to comply with R & Seurat requirements and conventions.\n  - Feature names with underscores (\'_\') are automatically replaced with dashes (\'-\')\n  - Seurat does not support global variables metadata /var.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml
index fef67489591..d93326f36d2 100644
--- a/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "velocyto_to_h5mu"
   namespace: "convert"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -183,7 +183,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -260,6 +260,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/velocyto_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/velocyto_to_h5mu/velocyto_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/convert/velocyto_to_h5mu/main.nf b/target/nextflow/convert/velocyto_to_h5mu/main.nf
index b4990b8d5a8..0937fe3638d 100644
--- a/target/nextflow/convert/velocyto_to_h5mu/main.nf
+++ b/target/nextflow/convert/velocyto_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// velocyto_to_h5mu 1.0.0rc2
+// velocyto_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "velocyto_to_h5mu",
     "namespace" : "convert",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3031,7 +3031,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3122,9 +3122,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/velocyto_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3553,7 +3553,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/convert_velocyto_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/convert/velocyto_to_h5mu/nextflow.config b/target/nextflow/convert/velocyto_to_h5mu/nextflow.config
index eb5617f6f69..3f0ec04507a 100644
--- a/target/nextflow/convert/velocyto_to_h5mu/nextflow.config
+++ b/target/nextflow/convert/velocyto_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'convert/velocyto_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert a velocyto loom file to a h5mu file.\n\nIf an input h5mu file is also provided, the velocity\nh5ad object will get added to that h5mu instead.\n'
   author = 'Dries Schaumont, Robrecht Cannoodt, Angela Oliveira Pisco'
 }
diff --git a/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml b/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml
index c6ac383a84d..9fb9242c9f7 100644
--- a/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml
+++ b/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellbender_remove_background"
   namespace: "correction"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   argument_groups:
   - name: "Inputs"
     arguments:
@@ -552,7 +552,7 @@ platforms:
   image: "nvcr.io/nvidia/cuda:11.8.0-devel-ubuntu22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -634,6 +634,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background/cellbender_remove_background"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/correction/cellbender_remove_background/main.nf b/target/nextflow/correction/cellbender_remove_background/main.nf
index cacff3497d7..d446ccdc8db 100644
--- a/target/nextflow/correction/cellbender_remove_background/main.nf
+++ b/target/nextflow/correction/cellbender_remove_background/main.nf
@@ -1,4 +1,4 @@
-// cellbender_remove_background 1.0.0rc2
+// cellbender_remove_background 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2774,7 +2774,7 @@ meta = [
   "functionality" : {
     "name" : "cellbender_remove_background",
     "namespace" : "correction",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "argument_groups" : [
       {
         "name" : "Inputs",
@@ -3367,7 +3367,7 @@ meta = [
       "image" : "nvcr.io/nvidia/cuda:11.8.0-devel-ubuntu22.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3459,9 +3459,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -4059,7 +4059,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/correction_cellbender_remove_background",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midcpu",
diff --git a/target/nextflow/correction/cellbender_remove_background/nextflow.config b/target/nextflow/correction/cellbender_remove_background/nextflow.config
index 758c32f4414..e9644a3bced 100644
--- a/target/nextflow/correction/cellbender_remove_background/nextflow.config
+++ b/target/nextflow/correction/cellbender_remove_background/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'correction/cellbender_remove_background'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Eliminating technical artifacts from high-throughput single-cell RNA sequencing data.\n\nThis module removes counts due to ambient RNA molecules and random barcode swapping from (raw) UMI-based scRNA-seq count matrices. \nAt the moment, only the count matrices produced by the CellRanger count pipeline is supported. Support for additional tools and protocols \nwill be added in the future. A quick start tutorial can be found here.\n\nFleming et al. 2022, bioRxiv.\n'
 }
 
diff --git a/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml b/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml
index 377f259f2d7..39299bca499 100644
--- a/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml
+++ b/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellbender_remove_background_v0_2"
   namespace: "correction"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   argument_groups:
   - name: "Inputs"
     arguments:
@@ -332,7 +332,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:22.12-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -410,6 +410,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background_v0_2"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf b/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf
index bc751f930c1..2c9827f5015 100644
--- a/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf
+++ b/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf
@@ -1,4 +1,4 @@
-// cellbender_remove_background_v0_2 1.0.0rc2
+// cellbender_remove_background_v0_2 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2774,7 +2774,7 @@ meta = [
   "functionality" : {
     "name" : "cellbender_remove_background_v0_2",
     "namespace" : "correction",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "argument_groups" : [
       {
         "name" : "Inputs",
@@ -3163,7 +3163,7 @@ meta = [
       "image" : "nvcr.io/nvidia/pytorch:22.12-py3",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3256,9 +3256,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background_v0_2",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3806,7 +3806,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/correction_cellbender_remove_background_v0_2",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "gpu"
diff --git a/target/nextflow/correction/cellbender_remove_background_v0_2/nextflow.config b/target/nextflow/correction/cellbender_remove_background_v0_2/nextflow.config
index cc2509b0a54..0aecd019b2b 100644
--- a/target/nextflow/correction/cellbender_remove_background_v0_2/nextflow.config
+++ b/target/nextflow/correction/cellbender_remove_background_v0_2/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'correction/cellbender_remove_background_v0_2'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Eliminating technical artifacts from high-throughput single-cell RNA sequencing data.\n\nThis module removes counts due to ambient RNA molecules and random barcode swapping from (raw) UMI-based scRNA-seq count matrices. \nAt the moment, only the count matrices produced by the CellRanger count pipeline is supported. Support for additional tools and protocols \nwill be added in the future. A quick start tutorial can be found here.\n\nFleming et al. 2022, bioRxiv.\n'
 }
 
diff --git a/target/nextflow/dataflow/concat/.config.vsh.yaml b/target/nextflow/dataflow/concat/.config.vsh.yaml
index a040f7fec7c..59849395794 100644
--- a/target/nextflow/dataflow/concat/.config.vsh.yaml
+++ b/target/nextflow/dataflow/concat/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "concat"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -142,7 +142,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -226,6 +226,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concat"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concat/concat"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/dataflow/concat/main.nf b/target/nextflow/dataflow/concat/main.nf
index 84e04ed5701..d1be650e209 100644
--- a/target/nextflow/dataflow/concat/main.nf
+++ b/target/nextflow/dataflow/concat/main.nf
@@ -1,4 +1,4 @@
-// concat 1.0.0rc2
+// concat 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "concat",
     "namespace" : "dataflow",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2957,7 +2957,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3061,9 +3061,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concat",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3770,7 +3770,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/dataflow_concat",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midcpu",
diff --git a/target/nextflow/dataflow/concat/nextflow.config b/target/nextflow/dataflow/concat/nextflow.config
index a1c389efc14..1f7f2b351d4 100644
--- a/target/nextflow/dataflow/concat/nextflow.config
+++ b/target/nextflow/dataflow/concat/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'dataflow/concat'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Concatenates several uni-modal samples in .h5mu files into a single file.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml b/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml
index 571e5d6789a..a404c13eaaa 100644
--- a/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml
+++ b/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "concatenate_h5mu"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -142,7 +142,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -226,6 +226,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concatenate_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concatenate_h5mu/concatenate_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/dataflow/concatenate_h5mu/main.nf b/target/nextflow/dataflow/concatenate_h5mu/main.nf
index 270b6b38515..f977c724065 100644
--- a/target/nextflow/dataflow/concatenate_h5mu/main.nf
+++ b/target/nextflow/dataflow/concatenate_h5mu/main.nf
@@ -1,4 +1,4 @@
-// concatenate_h5mu 1.0.0rc2
+// concatenate_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "concatenate_h5mu",
     "namespace" : "dataflow",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2957,7 +2957,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3061,9 +3061,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concatenate_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3770,7 +3770,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/dataflow_concatenate_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midcpu",
diff --git a/target/nextflow/dataflow/concatenate_h5mu/nextflow.config b/target/nextflow/dataflow/concatenate_h5mu/nextflow.config
index b3fdc49f70c..8b1aad7c235 100644
--- a/target/nextflow/dataflow/concatenate_h5mu/nextflow.config
+++ b/target/nextflow/dataflow/concatenate_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'dataflow/concatenate_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Concatenates several uni-modal samples in .h5mu files into a single file.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/dataflow/merge/.config.vsh.yaml b/target/nextflow/dataflow/merge/.config.vsh.yaml
index abd0e604ca9..9f383e5a413 100644
--- a/target/nextflow/dataflow/merge/.config.vsh.yaml
+++ b/target/nextflow/dataflow/merge/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "merge"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -96,7 +96,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -179,6 +179,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/merge"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/merge/merge"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/dataflow/merge/main.nf b/target/nextflow/dataflow/merge/main.nf
index bcba22d2d54..d32c53a8610 100644
--- a/target/nextflow/dataflow/merge/main.nf
+++ b/target/nextflow/dataflow/merge/main.nf
@@ -1,4 +1,4 @@
-// merge 1.0.0rc2
+// merge 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "merge",
     "namespace" : "dataflow",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2914,7 +2914,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3017,9 +3017,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/merge",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3473,7 +3473,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/dataflow_merge",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/dataflow/merge/nextflow.config b/target/nextflow/dataflow/merge/nextflow.config
index f9a14983a98..59d19b0f375 100644
--- a/target/nextflow/dataflow/merge/nextflow.config
+++ b/target/nextflow/dataflow/merge/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'dataflow/merge'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Combine one or more single-modality .h5mu files together into one .h5mu file.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/dataflow/split_modalities/.config.vsh.yaml b/target/nextflow/dataflow/split_modalities/.config.vsh.yaml
index 47f5809e38d..494295654aa 100644
--- a/target/nextflow/dataflow/split_modalities/.config.vsh.yaml
+++ b/target/nextflow/dataflow/split_modalities/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "split_modalities"
   namespace: "dataflow"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -123,7 +123,7 @@ platforms:
   image: "python:3.12-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -213,6 +213,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/split_modalities"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/split_modalities/split_modalities"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/dataflow/split_modalities/main.nf b/target/nextflow/dataflow/split_modalities/main.nf
index 2b3ef44a886..a5b05d7e9b4 100644
--- a/target/nextflow/dataflow/split_modalities/main.nf
+++ b/target/nextflow/dataflow/split_modalities/main.nf
@@ -1,4 +1,4 @@
-// split_modalities 1.0.0rc2
+// split_modalities 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "split_modalities",
     "namespace" : "dataflow",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2947,7 +2947,7 @@ meta = [
       "image" : "python:3.12-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3063,9 +3063,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/split_modalities",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3516,7 +3516,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/dataflow_split_modalities",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/dataflow/split_modalities/nextflow.config b/target/nextflow/dataflow/split_modalities/nextflow.config
index 100ac785fd8..a3862c483da 100644
--- a/target/nextflow/dataflow/split_modalities/nextflow.config
+++ b/target/nextflow/dataflow/split_modalities/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'dataflow/split_modalities'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Split the modalities from a single .h5mu multimodal sample into seperate .h5mu files. \n'
   author = 'Dries Schaumont, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/demux/bcl2fastq/.config.vsh.yaml b/target/nextflow/demux/bcl2fastq/.config.vsh.yaml
index ef56b2d0daf..f67991e3bd9 100644
--- a/target/nextflow/demux/bcl2fastq/.config.vsh.yaml
+++ b/target/nextflow/demux/bcl2fastq/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bcl2fastq"
   namespace: "demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Toni Verbeiren"
     roles:
@@ -110,7 +110,7 @@ platforms:
   image: "ghcr.io/data-intuitive/bcl2fastq:2.20"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -172,6 +172,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl2fastq"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl2fastq/bcl2fastq"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/demux/bcl2fastq/main.nf b/target/nextflow/demux/bcl2fastq/main.nf
index 485c119824f..301cecb605b 100644
--- a/target/nextflow/demux/bcl2fastq/main.nf
+++ b/target/nextflow/demux/bcl2fastq/main.nf
@@ -1,4 +1,4 @@
-// bcl2fastq 1.0.0rc2
+// bcl2fastq 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "bcl2fastq",
     "namespace" : "demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Toni Verbeiren",
@@ -2926,7 +2926,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/bcl2fastq:2.20",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2995,9 +2995,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl2fastq",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3403,7 +3403,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/demux_bcl2fastq",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/demux/bcl2fastq/nextflow.config b/target/nextflow/demux/bcl2fastq/nextflow.config
index 494e4ff1e4e..e57433f361c 100644
--- a/target/nextflow/demux/bcl2fastq/nextflow.config
+++ b/target/nextflow/demux/bcl2fastq/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'demux/bcl2fastq'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert bcl files to fastq files using bcl2fastq.\n'
   author = 'Toni Verbeiren'
 }
diff --git a/target/nextflow/demux/bcl_convert/.config.vsh.yaml b/target/nextflow/demux/bcl_convert/.config.vsh.yaml
index 7ee9b0002fe..231eb6d44c0 100644
--- a/target/nextflow/demux/bcl_convert/.config.vsh.yaml
+++ b/target/nextflow/demux/bcl_convert/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bcl_convert"
   namespace: "demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Toni Verbeiren"
     roles:
@@ -130,7 +130,7 @@ platforms:
   image: "ghcr.io/data-intuitive/bclconvert:3.10"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -192,6 +192,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl_convert"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl_convert/bcl_convert"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/demux/bcl_convert/main.nf b/target/nextflow/demux/bcl_convert/main.nf
index 7f045dfb3dd..378e3a3dbd4 100644
--- a/target/nextflow/demux/bcl_convert/main.nf
+++ b/target/nextflow/demux/bcl_convert/main.nf
@@ -1,4 +1,4 @@
-// bcl_convert 1.0.0rc2
+// bcl_convert 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "bcl_convert",
     "namespace" : "demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Toni Verbeiren",
@@ -2954,7 +2954,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/bclconvert:3.10",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3023,9 +3023,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl_convert",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3429,7 +3429,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/demux_bcl_convert",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/demux/bcl_convert/nextflow.config b/target/nextflow/demux/bcl_convert/nextflow.config
index 1a26596dfd4..a17db6b5d7d 100644
--- a/target/nextflow/demux/bcl_convert/nextflow.config
+++ b/target/nextflow/demux/bcl_convert/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'demux/bcl_convert'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert bcl files to fastq files using bcl-convert.\nInformation about upgrading from bcl2fastq via\nhttps://emea.support.illumina.com/bulletins/2020/10/upgrading-from-bcl2fastq-to-bcl-convert.html\nand https://support.illumina.com/sequencing/sequencing_software/bcl-convert/compatibility.html\n'
   author = 'Toni Verbeiren, Marijke Van Moerbeke'
 }
diff --git a/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml b/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml
index c44167466ae..e8561771d28 100644
--- a/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml
+++ b/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_mkfastq"
   namespace: "demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -138,7 +138,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -210,6 +210,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/cellranger_mkfastq"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/cellranger_mkfastq/cellranger_mkfastq"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/demux/cellranger_mkfastq/main.nf b/target/nextflow/demux/cellranger_mkfastq/main.nf
index 2d58e8efcfc..17593fbdd71 100644
--- a/target/nextflow/demux/cellranger_mkfastq/main.nf
+++ b/target/nextflow/demux/cellranger_mkfastq/main.nf
@@ -1,4 +1,4 @@
-// cellranger_mkfastq 1.0.0rc2
+// cellranger_mkfastq 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "cellranger_mkfastq",
     "namespace" : "demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -2974,7 +2974,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/cellranger:7.0",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3061,9 +3061,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/cellranger_mkfastq",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3501,7 +3501,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/demux_cellranger_mkfastq",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/demux/cellranger_mkfastq/nextflow.config b/target/nextflow/demux/cellranger_mkfastq/nextflow.config
index 8f002776113..d4855b580c3 100644
--- a/target/nextflow/demux/cellranger_mkfastq/nextflow.config
+++ b/target/nextflow/demux/cellranger_mkfastq/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'demux/cellranger_mkfastq'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Demultiplex raw sequencing data'
   author = 'Angela Oliveira Pisco, Samuel D\'Souza, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/dimred/pca/.config.vsh.yaml b/target/nextflow/dimred/pca/.config.vsh.yaml
index 83abf443730..13eee69d4b9 100644
--- a/target/nextflow/dimred/pca/.config.vsh.yaml
+++ b/target/nextflow/dimred/pca/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "pca"
   namespace: "dimred"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -176,7 +176,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -258,6 +258,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/pca"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/pca/pca"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/dimred/pca/main.nf b/target/nextflow/dimred/pca/main.nf
index c1dce63c637..f48f3fc0017 100644
--- a/target/nextflow/dimred/pca/main.nf
+++ b/target/nextflow/dimred/pca/main.nf
@@ -1,4 +1,4 @@
-// pca 1.0.0rc2
+// pca 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "pca",
     "namespace" : "dimred",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3002,7 +3002,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3102,9 +3102,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/pca",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3578,7 +3578,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/dimred_pca",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highcpu",
diff --git a/target/nextflow/dimred/pca/nextflow.config b/target/nextflow/dimred/pca/nextflow.config
index 48b931be7ec..208b3581626 100644
--- a/target/nextflow/dimred/pca/nextflow.config
+++ b/target/nextflow/dimred/pca/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'dimred/pca'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Computes PCA coordinates, loadings and variance decomposition. Uses the implementation of scikit-learn [Pedregosa11].\n'
   author = 'Dries De Maeyer'
 }
diff --git a/target/nextflow/dimred/umap/.config.vsh.yaml b/target/nextflow/dimred/umap/.config.vsh.yaml
index 7f173b166d1..8a64f717407 100644
--- a/target/nextflow/dimred/umap/.config.vsh.yaml
+++ b/target/nextflow/dimred/umap/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "umap"
   namespace: "dimred"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -235,7 +235,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -317,6 +317,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap/umap"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/dimred/umap/main.nf b/target/nextflow/dimred/umap/main.nf
index b7ee40e8c46..d6afea50fc9 100644
--- a/target/nextflow/dimred/umap/main.nf
+++ b/target/nextflow/dimred/umap/main.nf
@@ -1,4 +1,4 @@
-// umap 1.0.0rc2
+// umap 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "umap",
     "namespace" : "dimred",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3059,7 +3059,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3159,9 +3159,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3638,7 +3638,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/dimred_umap",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highcpu",
diff --git a/target/nextflow/dimred/umap/nextflow.config b/target/nextflow/dimred/umap/nextflow.config
index 0c8932d149f..f5b0d693ede 100644
--- a/target/nextflow/dimred/umap/nextflow.config
+++ b/target/nextflow/dimred/umap/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'dimred/umap'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'UMAP (Uniform Manifold Approximation and Projection) is a manifold learning technique suitable for visualizing high-dimensional data. Besides tending to be faster than tSNE, it optimizes the embedding such that it best reflects the topology of the data, which we represent throughout Scanpy using a neighborhood graph. tSNE, by contrast, optimizes the distribution of nearest-neighbor distances in the embedding such that these best match the distribution of distances in the high-dimensional space. We use the implementation of umap-learn [McInnes18]. For a few comparisons of UMAP with tSNE, see this preprint.\n'
   author = 'Dries De Maeyer'
 }
diff --git a/target/nextflow/download/download_file/.config.vsh.yaml b/target/nextflow/download/download_file/.config.vsh.yaml
index 1dfaf81faea..cf21cafc306 100644
--- a/target/nextflow/download/download_file/.config.vsh.yaml
+++ b/target/nextflow/download/download_file/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "download_file"
   namespace: "download"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -82,7 +82,7 @@ platforms:
   image: "bash:5.1.16"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -141,6 +141,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/download/download_file"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/download/download_file/download_file"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/download/download_file/main.nf b/target/nextflow/download/download_file/main.nf
index 7a7833162bd..d44f8feca71 100644
--- a/target/nextflow/download/download_file/main.nf
+++ b/target/nextflow/download/download_file/main.nf
@@ -1,4 +1,4 @@
-// download_file 1.0.0rc2
+// download_file 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "download_file",
     "namespace" : "download",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2890,7 +2890,7 @@ meta = [
       "image" : "bash:5.1.16",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2955,9 +2955,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/download/download_file",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3351,7 +3351,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/download_download_file",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "tag" : "$id"
 }'''),
diff --git a/target/nextflow/download/download_file/nextflow.config b/target/nextflow/download/download_file/nextflow.config
index 97756568cc6..857733bd08b 100644
--- a/target/nextflow/download/download_file/nextflow.config
+++ b/target/nextflow/download/download_file/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'download/download_file'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Download a file.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/download/sync_test_resources/.config.vsh.yaml b/target/nextflow/download/sync_test_resources/.config.vsh.yaml
index 0bb1cf2b5b2..e659e911ee6 100644
--- a/target/nextflow/download/sync_test_resources/.config.vsh.yaml
+++ b/target/nextflow/download/sync_test_resources/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "sync_test_resources"
   namespace: "download"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -108,7 +108,7 @@ platforms:
   image: "amazon/aws-cli:2.11.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -173,6 +173,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/download/sync_test_resources"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/download/sync_test_resources/sync_test_resources"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/download/sync_test_resources/main.nf b/target/nextflow/download/sync_test_resources/main.nf
index bfe2bf243f0..6295c940115 100644
--- a/target/nextflow/download/sync_test_resources/main.nf
+++ b/target/nextflow/download/sync_test_resources/main.nf
@@ -1,4 +1,4 @@
-// sync_test_resources 1.0.0rc2
+// sync_test_resources 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "sync_test_resources",
     "namespace" : "download",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2917,7 +2917,7 @@ meta = [
       "image" : "amazon/aws-cli:2.11.0",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2994,9 +2994,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/download/sync_test_resources",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3413,7 +3413,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/download_sync_test_resources",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "tag" : "$id"
 }'''),
diff --git a/target/nextflow/download/sync_test_resources/nextflow.config b/target/nextflow/download/sync_test_resources/nextflow.config
index 95d5edfe1cd..57c3f0071ef 100644
--- a/target/nextflow/download/sync_test_resources/nextflow.config
+++ b/target/nextflow/download/sync_test_resources/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'download/sync_test_resources'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Synchronise the test resources from s3://openpipelines-data to resources_test'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml b/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml
index 58cc8b5dd72..48770d8ed22 100644
--- a/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml
+++ b/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "highly_variable_features_scanpy"
   namespace: "feature_annotation"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -273,7 +273,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -352,6 +352,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/feature_annotation/highly_variable_features_scanpy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf b/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf
index 5e902104f3f..60e573e66ff 100644
--- a/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf
+++ b/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf
@@ -1,4 +1,4 @@
-// highly_variable_features_scanpy 1.0.0rc2
+// highly_variable_features_scanpy 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "highly_variable_features_scanpy",
     "namespace" : "feature_annotation",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3092,7 +3092,7 @@ meta = [
       "image" : "python:3.9",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3186,9 +3186,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/feature_annotation/highly_variable_features_scanpy",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3718,7 +3718,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/feature_annotation_highly_variable_features_scanpy",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/feature_annotation/highly_variable_features_scanpy/nextflow.config b/target/nextflow/feature_annotation/highly_variable_features_scanpy/nextflow.config
index cfaf328cab6..69ff263f510 100644
--- a/target/nextflow/feature_annotation/highly_variable_features_scanpy/nextflow.config
+++ b/target/nextflow/feature_annotation/highly_variable_features_scanpy/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'feature_annotation/highly_variable_features_scanpy'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Annotate highly variable features [Satija15] [Zheng17] [Stuart19].\n\nExpects logarithmized data, except when flavor=\'seurat_v3\' in which count data is expected.\n\nDepending on flavor, this reproduces the R-implementations of Seurat [Satija15], Cell Ranger [Zheng17], and Seurat v3 [Stuart19].\n\nFor the dispersion-based methods ([Satija15] and [Zheng17]), the normalized dispersion is obtained by scaling with the mean and standard deviation of the dispersions for features falling into a given bin for mean expression of features. This means that for each bin of mean expression, highly variable features are selected.\n\nFor [Stuart19], a normalized variance for each feature is computed. First, the data are standardized (i.e., z-score normalization per feature) with a regularized standard deviation. Next, the normalized variance is computed as the variance of each feature after the transformation. Features are ranked by the normalized variance.\n'
   author = 'Dries De Maeyer, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/files/make_params/.config.vsh.yaml b/target/nextflow/files/make_params/.config.vsh.yaml
index 303ebe6e37c..ade65b73915 100644
--- a/target/nextflow/files/make_params/.config.vsh.yaml
+++ b/target/nextflow/files/make_params/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "make_params"
   namespace: "files"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -161,7 +161,7 @@ platforms:
   image: "ghcr.io/data-intuitive/randpy:r4.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -223,6 +223,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/files/make_params"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/files/make_params/make_params"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/files/make_params/main.nf b/target/nextflow/files/make_params/main.nf
index ce3bb1e7da5..c692dd4d1a2 100644
--- a/target/nextflow/files/make_params/main.nf
+++ b/target/nextflow/files/make_params/main.nf
@@ -1,4 +1,4 @@
-// make_params 1.0.0rc2
+// make_params 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "make_params",
     "namespace" : "files",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -2992,7 +2992,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/randpy:r4.0",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3061,9 +3061,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/files/make_params",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3521,7 +3521,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/files_make_params",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/files/make_params/nextflow.config b/target/nextflow/files/make_params/nextflow.config
index 9423bb22bec..a90e6906a3e 100644
--- a/target/nextflow/files/make_params/nextflow.config
+++ b/target/nextflow/files/make_params/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'files/make_params'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Looks for files in a directory and turn it in a params file.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/filter/delimit_fraction/.config.vsh.yaml b/target/nextflow/filter/delimit_fraction/.config.vsh.yaml
index 5557b6e3f43..9dd88b7d460 100644
--- a/target/nextflow/filter/delimit_fraction/.config.vsh.yaml
+++ b/target/nextflow/filter/delimit_fraction/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "delimit_fraction"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -165,7 +165,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -253,6 +253,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/delimit_fraction"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/delimit_fraction/delimit_fraction"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/delimit_fraction/main.nf b/target/nextflow/filter/delimit_fraction/main.nf
index a0992b91b49..e04d17b8e8c 100644
--- a/target/nextflow/filter/delimit_fraction/main.nf
+++ b/target/nextflow/filter/delimit_fraction/main.nf
@@ -1,4 +1,4 @@
-// delimit_fraction 1.0.0rc2
+// delimit_fraction 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "delimit_fraction",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2996,7 +2996,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3108,9 +3108,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/delimit_fraction",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3586,7 +3586,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_delimit_fraction",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/filter/delimit_fraction/nextflow.config b/target/nextflow/filter/delimit_fraction/nextflow.config
index 7f7bde0424a..bfb62f3bfd2 100644
--- a/target/nextflow/filter/delimit_fraction/nextflow.config
+++ b/target/nextflow/filter/delimit_fraction/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/delimit_fraction'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Turns a column containing values between 0 and 1 into a boolean column based on thresholds.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/filter/do_filter/.config.vsh.yaml b/target/nextflow/filter/do_filter/.config.vsh.yaml
index 275907b9dd7..a3bced89f98 100644
--- a/target/nextflow/filter/do_filter/.config.vsh.yaml
+++ b/target/nextflow/filter/do_filter/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "do_filter"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -126,7 +126,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -206,6 +206,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter/do_filter"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/do_filter/main.nf b/target/nextflow/filter/do_filter/main.nf
index 76887e0575e..a0fd54f6b0f 100644
--- a/target/nextflow/filter/do_filter/main.nf
+++ b/target/nextflow/filter/do_filter/main.nf
@@ -1,4 +1,4 @@
-// do_filter 1.0.0rc2
+// do_filter 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "do_filter",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2947,7 +2947,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3045,9 +3045,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3493,7 +3493,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_do_filter",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/filter/do_filter/nextflow.config b/target/nextflow/filter/do_filter/nextflow.config
index a920c5ded6d..9f3550ef2fe 100644
--- a/target/nextflow/filter/do_filter/nextflow.config
+++ b/target/nextflow/filter/do_filter/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/do_filter'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Remove observations and variables based on specified .obs and .var columns.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/filter/filter_with_counts/.config.vsh.yaml b/target/nextflow/filter/filter_with_counts/.config.vsh.yaml
index 30edea5baf3..0d64bc2a9b5 100644
--- a/target/nextflow/filter/filter_with_counts/.config.vsh.yaml
+++ b/target/nextflow/filter/filter_with_counts/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_with_counts"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -219,7 +219,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -299,6 +299,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts/filter_with_counts"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/filter_with_counts/main.nf b/target/nextflow/filter/filter_with_counts/main.nf
index 1aa95aea415..650cddca910 100644
--- a/target/nextflow/filter/filter_with_counts/main.nf
+++ b/target/nextflow/filter/filter_with_counts/main.nf
@@ -1,4 +1,4 @@
-// filter_with_counts 1.0.0rc2
+// filter_with_counts 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "filter_with_counts",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3068,7 +3068,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3166,9 +3166,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3657,7 +3657,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_filter_with_counts",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/filter/filter_with_counts/nextflow.config b/target/nextflow/filter/filter_with_counts/nextflow.config
index 6c3d7e110fb..8b09023a082 100644
--- a/target/nextflow/filter/filter_with_counts/nextflow.config
+++ b/target/nextflow/filter/filter_with_counts/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/filter_with_counts'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Filter scRNA-seq data based on the primary QC metrics. \nThis is based on both the UMI counts, the gene counts \nand the mitochondrial genes (genes starting with mt/MT).\n'
   author = 'Dries De Maeyer, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/filter/filter_with_hvg/.config.vsh.yaml b/target/nextflow/filter/filter_with_hvg/.config.vsh.yaml
index 59947347037..33fe2107ae1 100644
--- a/target/nextflow/filter/filter_with_hvg/.config.vsh.yaml
+++ b/target/nextflow/filter/filter_with_hvg/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_with_hvg"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -278,7 +278,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -357,6 +357,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_hvg"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_hvg/filter_with_hvg"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/filter_with_hvg/main.nf b/target/nextflow/filter/filter_with_hvg/main.nf
index b40bb8dc91a..9b47acb0b8b 100644
--- a/target/nextflow/filter/filter_with_hvg/main.nf
+++ b/target/nextflow/filter/filter_with_hvg/main.nf
@@ -1,4 +1,4 @@
-// filter_with_hvg 1.0.0rc2
+// filter_with_hvg 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "filter_with_hvg",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3099,7 +3099,7 @@ meta = [
       "image" : "python:3.9",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3193,9 +3193,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_hvg",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3716,7 +3716,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_filter_with_hvg",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/filter/filter_with_hvg/nextflow.config b/target/nextflow/filter/filter_with_hvg/nextflow.config
index 1abf97b00bf..f6e8e4eb90e 100644
--- a/target/nextflow/filter/filter_with_hvg/nextflow.config
+++ b/target/nextflow/filter/filter_with_hvg/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/filter_with_hvg'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Annotate highly variable genes [Satija15] [Zheng17] [Stuart19].\n\nExpects logarithmized data, except when flavor=\'seurat_v3\' in which count data is expected.\n\nDepending on flavor, this reproduces the R-implementations of Seurat [Satija15], Cell Ranger [Zheng17], and Seurat v3 [Stuart19].\n\nFor the dispersion-based methods ([Satija15] and [Zheng17]), the normalized dispersion is obtained by scaling with the mean and standard deviation of the dispersions for genes falling into a given bin for mean expression of genes. This means that for each bin of mean expression, highly variable genes are selected.\n\nFor [Stuart19], a normalized variance for each gene is computed. First, the data are standardized (i.e., z-score normalization per feature) with a regularized standard deviation. Next, the normalized variance is computed as the variance of each gene after the transformation. Genes are ranked by the normalized variance.\n'
   author = 'Dries De Maeyer, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml b/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml
index 9f7113375a7..16ac46e996f 100644
--- a/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml
+++ b/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_with_scrublet"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -232,7 +232,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -319,6 +319,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_scrublet"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_scrublet/filter_with_scrublet"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/filter_with_scrublet/main.nf b/target/nextflow/filter/filter_with_scrublet/main.nf
index 39f24cb6897..bb45be6520d 100644
--- a/target/nextflow/filter/filter_with_scrublet/main.nf
+++ b/target/nextflow/filter/filter_with_scrublet/main.nf
@@ -1,4 +1,4 @@
-// filter_with_scrublet 1.0.0rc2
+// filter_with_scrublet 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "filter_with_scrublet",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3058,7 +3058,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3164,9 +3164,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_scrublet",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3643,7 +3643,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_filter_with_scrublet",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highcpu",
diff --git a/target/nextflow/filter/filter_with_scrublet/nextflow.config b/target/nextflow/filter/filter_with_scrublet/nextflow.config
index 7772337bb59..4f945ff8d42 100644
--- a/target/nextflow/filter/filter_with_scrublet/nextflow.config
+++ b/target/nextflow/filter/filter_with_scrublet/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/filter_with_scrublet'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Doublet detection using the Scrublet method (Wolock, Lopez and Klein, 2019).\nThe method tests for potential doublets by using the expression profiles of\ncells to generate synthetic potential doubles which are tested against cells. \nThe method returns a "doublet score" on which it calls for potential doublets.\n\nFor the source code please visit https://github.com/AllonKleinLab/scrublet.\n\nFor 10x we expect the doublet rates to be:\n  Multiplet Rate (%) - # of Cells Loaded - # of Cells Recovered\n  ~0.4% ~800 ~500\n  ~0.8% ~1,600 ~1,000\n  ~1.6% ~3,200 ~2,000\n  ~2.3% ~4,800 ~3,000\n  ~3.1% ~6,400 ~4,000\n  ~3.9% ~8,000 ~5,000\n  ~4.6% ~9,600 ~6,000\n  ~5.4% ~11,200 ~7,000\n  ~6.1% ~12,800 ~8,000\n  ~6.9% ~14,400 ~9,000\n  ~7.6% ~16,000 ~10,000\n'
   author = 'Dries De Maeyer, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/filter/intersect_obs/.config.vsh.yaml b/target/nextflow/filter/intersect_obs/.config.vsh.yaml
index 368e8aa885d..d58384ad811 100644
--- a/target/nextflow/filter/intersect_obs/.config.vsh.yaml
+++ b/target/nextflow/filter/intersect_obs/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "intersect_obs"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -113,7 +113,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -193,6 +193,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/intersect_obs"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/intersect_obs/intersect_obs"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/intersect_obs/main.nf b/target/nextflow/filter/intersect_obs/main.nf
index 4a48da2e557..98279f845af 100644
--- a/target/nextflow/filter/intersect_obs/main.nf
+++ b/target/nextflow/filter/intersect_obs/main.nf
@@ -1,4 +1,4 @@
-// intersect_obs 1.0.0rc2
+// intersect_obs 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "intersect_obs",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2937,7 +2937,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3035,9 +3035,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/intersect_obs",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3552,7 +3552,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_intersect_obs",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowcpu",
diff --git a/target/nextflow/filter/intersect_obs/nextflow.config b/target/nextflow/filter/intersect_obs/nextflow.config
index 7f51ad112b7..92cbed17108 100644
--- a/target/nextflow/filter/intersect_obs/nextflow.config
+++ b/target/nextflow/filter/intersect_obs/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/intersect_obs'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Create an intersection between two or more modalities.\n\nThis component removes any observations which are not present in all modalities.\n'
   author = 'Dries Schaumont, Isabelle Bergiers'
 }
diff --git a/target/nextflow/filter/remove_modality/.config.vsh.yaml b/target/nextflow/filter/remove_modality/.config.vsh.yaml
index 4168c6a44fa..05540db779b 100644
--- a/target/nextflow/filter/remove_modality/.config.vsh.yaml
+++ b/target/nextflow/filter/remove_modality/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "remove_modality"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -95,7 +95,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -175,6 +175,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/remove_modality"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/remove_modality/remove_modality"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/remove_modality/main.nf b/target/nextflow/filter/remove_modality/main.nf
index e4282e7a3d0..de335e2fc23 100644
--- a/target/nextflow/filter/remove_modality/main.nf
+++ b/target/nextflow/filter/remove_modality/main.nf
@@ -1,4 +1,4 @@
-// remove_modality 1.0.0rc2
+// remove_modality 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "remove_modality",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2907,7 +2907,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3005,9 +3005,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/remove_modality",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3409,7 +3409,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_remove_modality",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/filter/remove_modality/nextflow.config b/target/nextflow/filter/remove_modality/nextflow.config
index 483674b98aa..ce2661261e9 100644
--- a/target/nextflow/filter/remove_modality/nextflow.config
+++ b/target/nextflow/filter/remove_modality/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/remove_modality'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Remove a modality from a .h5mu file\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/filter/subset_h5mu/.config.vsh.yaml b/target/nextflow/filter/subset_h5mu/.config.vsh.yaml
index 1378f2fca76..97be644d92d 100644
--- a/target/nextflow/filter/subset_h5mu/.config.vsh.yaml
+++ b/target/nextflow/filter/subset_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "subset_h5mu"
   namespace: "filter"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -111,7 +111,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -191,6 +191,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/subset_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/subset_h5mu/subset_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/filter/subset_h5mu/main.nf b/target/nextflow/filter/subset_h5mu/main.nf
index 248dde39b5c..f6c559ffbe4 100644
--- a/target/nextflow/filter/subset_h5mu/main.nf
+++ b/target/nextflow/filter/subset_h5mu/main.nf
@@ -1,4 +1,4 @@
-// subset_h5mu 1.0.0rc2
+// subset_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "subset_h5mu",
     "namespace" : "filter",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2928,7 +2928,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3026,9 +3026,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/subset_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3434,7 +3434,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/filter_subset_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/filter/subset_h5mu/nextflow.config b/target/nextflow/filter/subset_h5mu/nextflow.config
index 120076136ed..4e95015d772 100644
--- a/target/nextflow/filter/subset_h5mu/nextflow.config
+++ b/target/nextflow/filter/subset_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'filter/subset_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Create a subset of a mudata file by selecting the first number of observations\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml b/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml
index 459046ad6f5..a1fb56cd344 100644
--- a/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bcftools"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -94,7 +94,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -179,6 +179,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/bcftools"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/bcftools/bcftools"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/bcftools/main.nf b/target/nextflow/genetic_demux/bcftools/main.nf
index 4181a0818a1..3a704dbc230 100644
--- a/target/nextflow/genetic_demux/bcftools/main.nf
+++ b/target/nextflow/genetic_demux/bcftools/main.nf
@@ -1,4 +1,4 @@
-// bcftools 1.0.0rc2
+// bcftools 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "bcftools",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -2904,7 +2904,7 @@ meta = [
       "image" : "ubuntu:latest",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3001,9 +3001,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/bcftools",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3407,7 +3407,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_bcftools",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/genetic_demux/bcftools/nextflow.config b/target/nextflow/genetic_demux/bcftools/nextflow.config
index 6814c20b910..ff2ee021508 100644
--- a/target/nextflow/genetic_demux/bcftools/nextflow.config
+++ b/target/nextflow/genetic_demux/bcftools/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/bcftools'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Filter the variants called by freebayes or cellSNP'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml b/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml
index ea961c7981b..29fe8c37bec 100644
--- a/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellsnp"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -283,7 +283,7 @@ platforms:
   image: "ubuntu:latest"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -374,6 +374,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/cellsnp"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/cellsnp/cellsnp"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/cellsnp/main.nf b/target/nextflow/genetic_demux/cellsnp/main.nf
index a92cac17351..0792287ebc7 100644
--- a/target/nextflow/genetic_demux/cellsnp/main.nf
+++ b/target/nextflow/genetic_demux/cellsnp/main.nf
@@ -1,4 +1,4 @@
-// cellsnp 1.0.0rc2
+// cellsnp 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "cellsnp",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3115,7 +3115,7 @@ meta = [
       "image" : "ubuntu:latest",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3219,9 +3219,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/cellsnp",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3658,7 +3658,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_cellsnp",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/genetic_demux/cellsnp/nextflow.config b/target/nextflow/genetic_demux/cellsnp/nextflow.config
index 7938c428430..be3ef867a02 100644
--- a/target/nextflow/genetic_demux/cellsnp/nextflow.config
+++ b/target/nextflow/genetic_demux/cellsnp/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/cellsnp'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'cellSNP aims to pileup the expressed alleles in single-cell or bulk RNA-seq data. It can be directly used for donor deconvolution in multiplexed single-cell RNA-seq data, particularly with vireo.'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml b/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml
index d1d64fed7d8..ad08b92e05f 100644
--- a/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "demuxlet"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -366,7 +366,7 @@ platforms:
   image: "ubuntu:20.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -459,6 +459,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/demuxlet"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/demuxlet/demuxlet"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/demuxlet/main.nf b/target/nextflow/genetic_demux/demuxlet/main.nf
index 3780565e567..f9658e567b3 100644
--- a/target/nextflow/genetic_demux/demuxlet/main.nf
+++ b/target/nextflow/genetic_demux/demuxlet/main.nf
@@ -1,4 +1,4 @@
-// demuxlet 1.0.0rc2
+// demuxlet 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "demuxlet",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3215,7 +3215,7 @@ meta = [
       "image" : "ubuntu:20.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3324,9 +3324,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/demuxlet",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3833,7 +3833,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_demuxlet",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/genetic_demux/demuxlet/nextflow.config b/target/nextflow/genetic_demux/demuxlet/nextflow.config
index d05e996c333..8b65cb5ebcc 100644
--- a/target/nextflow/genetic_demux/demuxlet/nextflow.config
+++ b/target/nextflow/genetic_demux/demuxlet/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/demuxlet'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Demuxlet is a software tool to deconvolute sample identity and identify multiplets when\nmultiple samples are pooled by barcoded single cell sequencing. If external genotyping data\nfor each sample is available (e.g. from SNP arrays), demuxlet would be recommended. Be careful\nthat the parameters on the github is not in line with the newest help version.\n'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml b/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml
index 7115558ff2d..bd36d9e3d80 100644
--- a/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "dsc_pileup"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -283,7 +283,7 @@ platforms:
   image: "ubuntu:20.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -370,6 +370,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/dsc_pileup"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/dsc_pileup/dsc_pileup"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/dsc_pileup/main.nf b/target/nextflow/genetic_demux/dsc_pileup/main.nf
index 96a0da2ddff..24ea804a87d 100644
--- a/target/nextflow/genetic_demux/dsc_pileup/main.nf
+++ b/target/nextflow/genetic_demux/dsc_pileup/main.nf
@@ -1,4 +1,4 @@
-// dsc_pileup 1.0.0rc2
+// dsc_pileup 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "dsc_pileup",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3121,7 +3121,7 @@ meta = [
       "image" : "ubuntu:20.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3221,9 +3221,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/dsc_pileup",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3655,7 +3655,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_dsc_pileup",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/genetic_demux/dsc_pileup/nextflow.config b/target/nextflow/genetic_demux/dsc_pileup/nextflow.config
index 90497a6ad52..685519021bc 100644
--- a/target/nextflow/genetic_demux/dsc_pileup/nextflow.config
+++ b/target/nextflow/genetic_demux/dsc_pileup/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/dsc_pileup'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Dsc-pileup is a software tool to pileup reads and corresponding base quality \nfor each overlapping SNPs and each barcode. By using pileup files,\nit would allow us to run demuxlet/freemuxlet pretty fast multiple times\nwithout going over the BAM file again.\n'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml b/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml
index 3710f742f87..889d3fbfb07 100644
--- a/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "freebayes"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -786,7 +786,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -853,6 +853,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/freebayes"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/freebayes/freebayes"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/freebayes/main.nf b/target/nextflow/genetic_demux/freebayes/main.nf
index f91f57c6dae..233cc66730b 100644
--- a/target/nextflow/genetic_demux/freebayes/main.nf
+++ b/target/nextflow/genetic_demux/freebayes/main.nf
@@ -1,4 +1,4 @@
-// freebayes 1.0.0rc2
+// freebayes 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "freebayes",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3635,7 +3635,7 @@ meta = [
       "image" : "ubuntu:22.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3713,9 +3713,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/freebayes",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -4260,7 +4260,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_freebayes",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/genetic_demux/freebayes/nextflow.config b/target/nextflow/genetic_demux/freebayes/nextflow.config
index 25d1008309a..464a7dea5c6 100644
--- a/target/nextflow/genetic_demux/freebayes/nextflow.config
+++ b/target/nextflow/genetic_demux/freebayes/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/freebayes'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Freebayes is a Bayesian genetic variant detector designed to\nfind small polymorphisms, specifically SNPs.\n'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml b/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml
index 65d6d161b93..172d24dfe28 100644
--- a/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "freemuxlet"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -274,7 +274,7 @@ platforms:
   image: "ubuntu:20.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -367,6 +367,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/freemuxlet"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/freemuxlet/freemuxlet"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/freemuxlet/main.nf b/target/nextflow/genetic_demux/freemuxlet/main.nf
index f0e44133ef3..49b4e55b1af 100644
--- a/target/nextflow/genetic_demux/freemuxlet/main.nf
+++ b/target/nextflow/genetic_demux/freemuxlet/main.nf
@@ -1,4 +1,4 @@
-// freemuxlet 1.0.0rc2
+// freemuxlet 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "freemuxlet",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3113,7 +3113,7 @@ meta = [
       "image" : "ubuntu:20.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3222,9 +3222,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/freemuxlet",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3720,7 +3720,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_freemuxlet",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/genetic_demux/freemuxlet/nextflow.config b/target/nextflow/genetic_demux/freemuxlet/nextflow.config
index 32a9de50310..57a1ad036c7 100644
--- a/target/nextflow/genetic_demux/freemuxlet/nextflow.config
+++ b/target/nextflow/genetic_demux/freemuxlet/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/freemuxlet'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Freemuxlet is a software tool to deconvolute sample identity and identify multiplets when\nmultiple samples are pooled by barcoded single cell sequencing. If external genotyping\ndata is not available, the genotyping-free version demuxlet, freemuxlet, would be recommended.\n'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/samtools/.config.vsh.yaml b/target/nextflow/genetic_demux/samtools/.config.vsh.yaml
index d90f9026d95..37a04f47977 100644
--- a/target/nextflow/genetic_demux/samtools/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/samtools/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "samtools"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -70,7 +70,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -154,6 +154,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/samtools"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/samtools/samtools"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/samtools/main.nf b/target/nextflow/genetic_demux/samtools/main.nf
index 9c172ec80f3..e0bbd4ffdff 100644
--- a/target/nextflow/genetic_demux/samtools/main.nf
+++ b/target/nextflow/genetic_demux/samtools/main.nf
@@ -1,4 +1,4 @@
-// samtools 1.0.0rc2
+// samtools 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "samtools",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -2877,7 +2877,7 @@ meta = [
       "image" : "python:3.9",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2976,9 +2976,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/samtools",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3369,7 +3369,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_samtools",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/genetic_demux/samtools/nextflow.config b/target/nextflow/genetic_demux/samtools/nextflow.config
index e9498fedb36..472b3334cb9 100644
--- a/target/nextflow/genetic_demux/samtools/nextflow.config
+++ b/target/nextflow/genetic_demux/samtools/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/samtools'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Filter the BAM according to the instruction of scSplit via Samtools.'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml b/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml
index 715a3ec2511..5766580bf65 100644
--- a/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scsplit"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -210,7 +210,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -293,6 +293,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/scsplit"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/scsplit/scsplit"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/scsplit/main.nf b/target/nextflow/genetic_demux/scsplit/main.nf
index c8250fd4c16..a14bbbf233c 100644
--- a/target/nextflow/genetic_demux/scsplit/main.nf
+++ b/target/nextflow/genetic_demux/scsplit/main.nf
@@ -1,4 +1,4 @@
-// scsplit 1.0.0rc2
+// scsplit 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "scsplit",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3034,7 +3034,7 @@ meta = [
       "image" : "python:3.9",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3133,9 +3133,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/scsplit",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3569,7 +3569,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_scsplit",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/genetic_demux/scsplit/nextflow.config b/target/nextflow/genetic_demux/scsplit/nextflow.config
index e792f47c1b8..ecdbb51b834 100644
--- a/target/nextflow/genetic_demux/scsplit/nextflow.config
+++ b/target/nextflow/genetic_demux/scsplit/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/scsplit'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'scsplit is a genotype-free demultiplexing methode of pooled single-cell RNA-seq, using a hidden state model for identifying genetically distinct samples within a mixed population.'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml b/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml
index f54bd241396..5bacb178bba 100644
--- a/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "souporcell"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -220,7 +220,7 @@ platforms:
   image: "cumulusprod/souporcell:2022.12"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -282,6 +282,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/souporcell"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/souporcell/souporcell"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/souporcell/main.nf b/target/nextflow/genetic_demux/souporcell/main.nf
index 0a60ce511d7..f2911a11c41 100644
--- a/target/nextflow/genetic_demux/souporcell/main.nf
+++ b/target/nextflow/genetic_demux/souporcell/main.nf
@@ -1,4 +1,4 @@
-// souporcell 1.0.0rc2
+// souporcell 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "souporcell",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3046,7 +3046,7 @@ meta = [
       "image" : "cumulusprod/souporcell:2022.12",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3115,9 +3115,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/souporcell",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3546,7 +3546,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_souporcell",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/genetic_demux/souporcell/nextflow.config b/target/nextflow/genetic_demux/souporcell/nextflow.config
index cd76901bfd4..d9cf90e02e6 100644
--- a/target/nextflow/genetic_demux/souporcell/nextflow.config
+++ b/target/nextflow/genetic_demux/souporcell/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/souporcell'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'souporcell is a method for clustering mixed-genotype scRNAseq experiments by individual.'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/genetic_demux/vireo/.config.vsh.yaml b/target/nextflow/genetic_demux/vireo/.config.vsh.yaml
index 7b00d0bddd1..2a1f8782e3c 100644
--- a/target/nextflow/genetic_demux/vireo/.config.vsh.yaml
+++ b/target/nextflow/genetic_demux/vireo/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "vireo"
   namespace: "genetic_demux"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Xichen Wu"
     roles:
@@ -233,7 +233,7 @@ platforms:
   image: "python:3.10"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -302,6 +302,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/vireo"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/vireo/vireo"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/genetic_demux/vireo/main.nf b/target/nextflow/genetic_demux/vireo/main.nf
index 9454dac94d1..10cbac4fe33 100644
--- a/target/nextflow/genetic_demux/vireo/main.nf
+++ b/target/nextflow/genetic_demux/vireo/main.nf
@@ -1,4 +1,4 @@
-// vireo 1.0.0rc2
+// vireo 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "vireo",
     "namespace" : "genetic_demux",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Xichen Wu",
@@ -3066,7 +3066,7 @@ meta = [
       "image" : "python:3.10",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3146,9 +3146,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/genetic_demux/vireo",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3579,7 +3579,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/genetic_demux_vireo",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/genetic_demux/vireo/nextflow.config b/target/nextflow/genetic_demux/vireo/nextflow.config
index 2b64c316519..6420d842ed8 100644
--- a/target/nextflow/genetic_demux/vireo/nextflow.config
+++ b/target/nextflow/genetic_demux/vireo/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'genetic_demux/vireo'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Vireo is primarily designed for demultiplexing cells into donors by modelling of expressed alleles.'
   author = 'Xichen Wu'
 }
diff --git a/target/nextflow/integrate/harmonypy/.config.vsh.yaml b/target/nextflow/integrate/harmonypy/.config.vsh.yaml
index 2802e17757a..54bf163fcbd 100644
--- a/target/nextflow/integrate/harmonypy/.config.vsh.yaml
+++ b/target/nextflow/integrate/harmonypy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "harmonypy"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -162,7 +162,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -245,6 +245,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/harmonypy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/harmonypy/harmonypy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/integrate/harmonypy/main.nf b/target/nextflow/integrate/harmonypy/main.nf
index af4f693d380..1d568320e4a 100644
--- a/target/nextflow/integrate/harmonypy/main.nf
+++ b/target/nextflow/integrate/harmonypy/main.nf
@@ -1,4 +1,4 @@
-// harmonypy 1.0.0rc2
+// harmonypy 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "harmonypy",
     "namespace" : "integrate",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2991,7 +2991,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3092,9 +3092,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/harmonypy",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3506,7 +3506,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/integrate_harmonypy",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/integrate/harmonypy/nextflow.config b/target/nextflow/integrate/harmonypy/nextflow.config
index 70e303bc480..e2a8bdd6882 100644
--- a/target/nextflow/integrate/harmonypy/nextflow.config
+++ b/target/nextflow/integrate/harmonypy/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'integrate/harmonypy'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs Harmony integration based as described in https://github.com/immunogenomics/harmony. Based on an implementation in python from https://github.com/slowkow/harmonypy'
   author = 'Dries Schaumont, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/integrate/scanorama/.config.vsh.yaml b/target/nextflow/integrate/scanorama/.config.vsh.yaml
index 6c91bb76e63..71126d53a7c 100644
--- a/target/nextflow/integrate/scanorama/.config.vsh.yaml
+++ b/target/nextflow/integrate/scanorama/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scanorama"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -204,7 +204,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -288,6 +288,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scanorama"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scanorama/scanorama"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/integrate/scanorama/main.nf b/target/nextflow/integrate/scanorama/main.nf
index 87680c502ed..a41fe5c96d5 100644
--- a/target/nextflow/integrate/scanorama/main.nf
+++ b/target/nextflow/integrate/scanorama/main.nf
@@ -1,4 +1,4 @@
-// scanorama 1.0.0rc2
+// scanorama 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "scanorama",
     "namespace" : "integrate",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3039,7 +3039,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3141,9 +3141,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scanorama",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3562,7 +3562,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/integrate_scanorama",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midcpu",
diff --git a/target/nextflow/integrate/scanorama/nextflow.config b/target/nextflow/integrate/scanorama/nextflow.config
index 2fff329d7fd..02c55255acd 100644
--- a/target/nextflow/integrate/scanorama/nextflow.config
+++ b/target/nextflow/integrate/scanorama/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'integrate/scanorama'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Use Scanorama to integrate different experiments.\n'
   author = 'Dries De Maeyer, Dries Schaumont'
 }
diff --git a/target/nextflow/integrate/scarches/.config.vsh.yaml b/target/nextflow/integrate/scarches/.config.vsh.yaml
index 7807c021d51..fb828eed0be 100644
--- a/target/nextflow/integrate/scarches/.config.vsh.yaml
+++ b/target/nextflow/integrate/scarches/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scarches"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     info:
@@ -255,7 +255,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -336,6 +336,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scarches"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scarches/scarches"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/integrate/scarches/main.nf b/target/nextflow/integrate/scarches/main.nf
index b442310759a..ae00000061a 100644
--- a/target/nextflow/integrate/scarches/main.nf
+++ b/target/nextflow/integrate/scarches/main.nf
@@ -1,4 +1,4 @@
-// scarches 1.0.0rc2
+// scarches 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "scarches",
     "namespace" : "integrate",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Vladimir Shitov",
@@ -3100,7 +3100,7 @@ meta = [
       "image" : "nvcr.io/nvidia/pytorch:23.09-py3",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3198,9 +3198,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scarches",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3822,7 +3822,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/integrate_scarches",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/integrate/scarches/nextflow.config b/target/nextflow/integrate/scarches/nextflow.config
index 24bb3f626cc..eb5ae50ab02 100644
--- a/target/nextflow/integrate/scarches/nextflow.config
+++ b/target/nextflow/integrate/scarches/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'integrate/scarches'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs reference mapping with scArches'
   author = 'Vladimir Shitov'
 }
diff --git a/target/nextflow/integrate/scvi/.config.vsh.yaml b/target/nextflow/integrate/scvi/.config.vsh.yaml
index 9a763796b72..d4542ead86e 100644
--- a/target/nextflow/integrate/scvi/.config.vsh.yaml
+++ b/target/nextflow/integrate/scvi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scvi"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Malte D. Luecken"
     roles:
@@ -503,7 +503,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -594,6 +594,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scvi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scvi/scvi"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/integrate/scvi/main.nf b/target/nextflow/integrate/scvi/main.nf
index 1f9d61db104..0f690d3198a 100644
--- a/target/nextflow/integrate/scvi/main.nf
+++ b/target/nextflow/integrate/scvi/main.nf
@@ -1,4 +1,4 @@
-// scvi 1.0.0rc2
+// scvi 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "scvi",
     "namespace" : "integrate",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Malte D. Luecken",
@@ -3386,7 +3386,7 @@ meta = [
       "image" : "nvcr.io/nvidia/pytorch:23.09-py3",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3498,9 +3498,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scvi",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -4028,7 +4028,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/integrate_scvi",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midcpu",
diff --git a/target/nextflow/integrate/scvi/nextflow.config b/target/nextflow/integrate/scvi/nextflow.config
index 6d8f6194696..769c29cd08d 100644
--- a/target/nextflow/integrate/scvi/nextflow.config
+++ b/target/nextflow/integrate/scvi/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'integrate/scvi'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs scvi integration as done in the human lung cell atlas https://github.com/LungCellAtlas/HLCA'
   author = 'Malte D. Luecken, Dries Schaumont, Matthias Beyens'
 }
diff --git a/target/nextflow/integrate/totalvi/.config.vsh.yaml b/target/nextflow/integrate/totalvi/.config.vsh.yaml
index 04c59144a6b..1a7e8ee5dbc 100644
--- a/target/nextflow/integrate/totalvi/.config.vsh.yaml
+++ b/target/nextflow/integrate/totalvi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "totalvi"
   namespace: "integrate"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     info:
@@ -266,7 +266,7 @@ platforms:
   image: "nvcr.io/nvidia/pytorch:23.09-py3"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -353,6 +353,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/totalvi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/totalvi/totalvi"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/integrate/totalvi/main.nf b/target/nextflow/integrate/totalvi/main.nf
index 9f62b5a0839..250391f49c2 100644
--- a/target/nextflow/integrate/totalvi/main.nf
+++ b/target/nextflow/integrate/totalvi/main.nf
@@ -1,4 +1,4 @@
-// totalvi 1.0.0rc2
+// totalvi 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "totalvi",
     "namespace" : "integrate",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Vladimir Shitov",
@@ -3111,7 +3111,7 @@ meta = [
       "image" : "nvcr.io/nvidia/pytorch:23.09-py3",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3218,9 +3218,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/totalvi",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3783,7 +3783,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/integrate_totalvi",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/integrate/totalvi/nextflow.config b/target/nextflow/integrate/totalvi/nextflow.config
index 1db86053904..17428bf80bf 100644
--- a/target/nextflow/integrate/totalvi/nextflow.config
+++ b/target/nextflow/integrate/totalvi/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'integrate/totalvi'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs mapping to the reference by totalvi model: https://docs.scvi-tools.org/en/stable/tutorials/notebooks/scarches_scvi_tools.html#Reference-mapping-with-TOTALVI'
   author = 'Vladimir Shitov'
 }
diff --git a/target/nextflow/interpret/lianapy/.config.vsh.yaml b/target/nextflow/interpret/lianapy/.config.vsh.yaml
index fb60d390dc5..b439f3816c8 100644
--- a/target/nextflow/interpret/lianapy/.config.vsh.yaml
+++ b/target/nextflow/interpret/lianapy/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "lianapy"
   namespace: "interpret"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Mauro Saporita"
     roles:
@@ -234,7 +234,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -317,6 +317,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/interpret/lianapy"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/interpret/lianapy/lianapy"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/interpret/lianapy/main.nf b/target/nextflow/interpret/lianapy/main.nf
index c507b9340f1..1bcb67afea6 100644
--- a/target/nextflow/interpret/lianapy/main.nf
+++ b/target/nextflow/interpret/lianapy/main.nf
@@ -1,4 +1,4 @@
-// lianapy 1.0.0rc2
+// lianapy 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "lianapy",
     "namespace" : "interpret",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Mauro Saporita",
@@ -3067,7 +3067,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3168,9 +3168,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/interpret/lianapy",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3616,7 +3616,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/interpret_lianapy",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/interpret/lianapy/nextflow.config b/target/nextflow/interpret/lianapy/nextflow.config
index 3de6f6f7976..eab8d03cd59 100644
--- a/target/nextflow/interpret/lianapy/nextflow.config
+++ b/target/nextflow/interpret/lianapy/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'interpret/lianapy'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs LIANA integration based as described in https://github.com/saezlab/liana-py'
   author = 'Mauro Saporita, Povilas Gibas'
 }
diff --git a/target/nextflow/labels_transfer/knn/.config.vsh.yaml b/target/nextflow/labels_transfer/knn/.config.vsh.yaml
index ff5bfd8b5dd..f1aeb6e024c 100644
--- a/target/nextflow/labels_transfer/knn/.config.vsh.yaml
+++ b/target/nextflow/labels_transfer/knn/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "knn"
   namespace: "labels_transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     roles:
@@ -286,7 +286,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -384,6 +384,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/labels_transfer/knn"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/labels_transfer/knn/knn"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/labels_transfer/knn/main.nf b/target/nextflow/labels_transfer/knn/main.nf
index 61528d19832..646529004e5 100644
--- a/target/nextflow/labels_transfer/knn/main.nf
+++ b/target/nextflow/labels_transfer/knn/main.nf
@@ -1,4 +1,4 @@
-// knn 1.0.0rc2
+// knn 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "knn",
     "namespace" : "labels_transfer",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Vladimir Shitov",
@@ -3141,7 +3141,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3265,9 +3265,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/labels_transfer/knn",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3781,7 +3781,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/labels_transfer_knn",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/labels_transfer/knn/nextflow.config b/target/nextflow/labels_transfer/knn/nextflow.config
index 9fb56e1be20..d5b39c7bb4b 100644
--- a/target/nextflow/labels_transfer/knn/nextflow.config
+++ b/target/nextflow/labels_transfer/knn/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'labels_transfer/knn'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs label transfer from reference to query using KNN classifier'
   author = 'Vladimir Shitov'
 }
diff --git a/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml b/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml
index 2e028b05b1c..01b271441ef 100644
--- a/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml
+++ b/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "xgboost"
   namespace: "labels_transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Vladimir Shitov"
     roles:
@@ -499,7 +499,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -599,6 +599,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/labels_transfer/xgboost"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/labels_transfer/xgboost/xgboost"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/labels_transfer/xgboost/main.nf b/target/nextflow/labels_transfer/xgboost/main.nf
index 90cc23d6ae2..aa87e69f640 100644
--- a/target/nextflow/labels_transfer/xgboost/main.nf
+++ b/target/nextflow/labels_transfer/xgboost/main.nf
@@ -1,4 +1,4 @@
-// xgboost 1.0.0rc2
+// xgboost 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "xgboost",
     "namespace" : "labels_transfer",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Vladimir Shitov",
@@ -3375,7 +3375,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3501,9 +3501,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/labels_transfer/xgboost",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -4281,7 +4281,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/labels_transfer_xgboost",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/labels_transfer/xgboost/nextflow.config b/target/nextflow/labels_transfer/xgboost/nextflow.config
index 64dabbe7bf8..6158a1d429f 100644
--- a/target/nextflow/labels_transfer/xgboost/nextflow.config
+++ b/target/nextflow/labels_transfer/xgboost/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'labels_transfer/xgboost'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Performs label transfer from reference to query using XGBoost classifier'
   author = 'Vladimir Shitov'
 }
diff --git a/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml b/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml
index 1ee4f835ca6..a862a4ffa3a 100644
--- a/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml
+++ b/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bd_rhapsody"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -352,7 +352,7 @@ platforms:
   image: "ghcr.io/data-intuitive/bd_rhapsody:1.10.1"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -420,6 +420,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/bd_rhapsody"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/bd_rhapsody/bd_rhapsody"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/bd_rhapsody/main.nf b/target/nextflow/mapping/bd_rhapsody/main.nf
index 7ca5d592b72..c0df1f3cf81 100644
--- a/target/nextflow/mapping/bd_rhapsody/main.nf
+++ b/target/nextflow/mapping/bd_rhapsody/main.nf
@@ -1,4 +1,4 @@
-// bd_rhapsody 1.0.0rc2
+// bd_rhapsody 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "bd_rhapsody",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -3216,7 +3216,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/bd_rhapsody:1.10.1",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3295,9 +3295,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/bd_rhapsody",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -4107,7 +4107,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_bd_rhapsody",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/bd_rhapsody/nextflow.config b/target/nextflow/mapping/bd_rhapsody/nextflow.config
index 7def345b77b..27e6a2e7a21 100644
--- a/target/nextflow/mapping/bd_rhapsody/nextflow.config
+++ b/target/nextflow/mapping/bd_rhapsody/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/bd_rhapsody'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A wrapper for the BD Rhapsody Analysis CWL v1.10.1 pipeline.\n\nThe CWL pipeline file is obtained by cloning \'https://bitbucket.org/CRSwDev/cwl/src/master/\' and removing all objects with class \'DockerRequirement\' from the YML.\n\nThis pipeline can be used for a targeted analysis (with `--mode targeted`) or for a whole transcriptome analysis (with `--mode wta`).\n\n* If mode is `"targeted"`, then either the `--reference` or `--abseq_reference` parameters must be defined.\n* If mode is `"wta"`, then `--reference` and `--transcriptome_annotation` must be defined, `--abseq_reference` and `--supplemental_reference` is optional.\n\nThe reference_genome and transcriptome_annotation files can be generated with the make_reference pipeline.\nAlternatively, BD also provides standard references which can be downloaded from these locations:\n\n  - Human: http://bd-rhapsody-public.s3-website-us-east-1.amazonaws.com/Rhapsody-WTA/GRCh38-PhiX-gencodev29/\n  - Mouse: http://bd-rhapsody-public.s3-website-us-east-1.amazonaws.com/Rhapsody-WTA/GRCm38-PhiX-gencodevM19/\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/mapping/cellranger_count/.config.vsh.yaml b/target/nextflow/mapping/cellranger_count/.config.vsh.yaml
index 8f4c578b0d1..e65401dddd3 100644
--- a/target/nextflow/mapping/cellranger_count/.config.vsh.yaml
+++ b/target/nextflow/mapping/cellranger_count/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_count"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -203,7 +203,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -269,6 +269,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count/cellranger_count"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/cellranger_count/main.nf b/target/nextflow/mapping/cellranger_count/main.nf
index 8da13117c84..3113ebdef5d 100644
--- a/target/nextflow/mapping/cellranger_count/main.nf
+++ b/target/nextflow/mapping/cellranger_count/main.nf
@@ -1,4 +1,4 @@
-// cellranger_count 1.0.0rc2
+// cellranger_count 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "cellranger_count",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -3049,7 +3049,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/cellranger:7.0",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3126,9 +3126,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3600,7 +3600,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_cellranger_count",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/cellranger_count/nextflow.config b/target/nextflow/mapping/cellranger_count/nextflow.config
index cd3dfe95621..44892ab08f5 100644
--- a/target/nextflow/mapping/cellranger_count/nextflow.config
+++ b/target/nextflow/mapping/cellranger_count/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/cellranger_count'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Align fastq files using Cell Ranger count.'
   author = 'Angela Oliveira Pisco, Samuel D\'Souza, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml b/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml
index 9f94c85916a..c92b9b85216 100644
--- a/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml
+++ b/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_count_split"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -159,7 +159,7 @@ platforms:
   image: "ubuntu:jammy"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -222,6 +222,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count_split"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count_split/cellranger_count_split"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/cellranger_count_split/main.nf b/target/nextflow/mapping/cellranger_count_split/main.nf
index 43630b8952e..dd0933fdc78 100644
--- a/target/nextflow/mapping/cellranger_count_split/main.nf
+++ b/target/nextflow/mapping/cellranger_count_split/main.nf
@@ -1,4 +1,4 @@
-// cellranger_count_split 1.0.0rc2
+// cellranger_count_split 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "cellranger_count_split",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -2993,7 +2993,7 @@ meta = [
       "image" : "ubuntu:jammy",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3066,9 +3066,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count_split",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3494,7 +3494,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_cellranger_count_split",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "tag" : "$id"
 }'''),
diff --git a/target/nextflow/mapping/cellranger_count_split/nextflow.config b/target/nextflow/mapping/cellranger_count_split/nextflow.config
index fc56e62cde8..55f6b004766 100644
--- a/target/nextflow/mapping/cellranger_count_split/nextflow.config
+++ b/target/nextflow/mapping/cellranger_count_split/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/cellranger_count_split'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Split 10x Cell Ranger output directory into separate output fields.'
   author = 'Angela Oliveira Pisco, Samuel D\'Souza, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml b/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml
index 9709d105c5f..9154b4531a0 100644
--- a/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml
+++ b/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_multi"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -498,7 +498,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -584,6 +584,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_multi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_multi/cellranger_multi"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/cellranger_multi/main.nf b/target/nextflow/mapping/cellranger_multi/main.nf
index be6c23fe1c2..41a10a36cea 100644
--- a/target/nextflow/mapping/cellranger_multi/main.nf
+++ b/target/nextflow/mapping/cellranger_multi/main.nf
@@ -1,4 +1,4 @@
-// cellranger_multi 1.0.0rc2
+// cellranger_multi 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "cellranger_multi",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -3363,7 +3363,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/cellranger:7.0",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3473,9 +3473,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_multi",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -4243,7 +4243,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_cellranger_multi",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "veryhighmem",
diff --git a/target/nextflow/mapping/cellranger_multi/nextflow.config b/target/nextflow/mapping/cellranger_multi/nextflow.config
index 731af43f5b6..3769c8b0a47 100644
--- a/target/nextflow/mapping/cellranger_multi/nextflow.config
+++ b/target/nextflow/mapping/cellranger_multi/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/cellranger_multi'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Align fastq files using Cell Ranger multi.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt, Dries De Maeyer'
 }
diff --git a/target/nextflow/mapping/htseq_count/.config.vsh.yaml b/target/nextflow/mapping/htseq_count/.config.vsh.yaml
index 291ecc61d80..8aa81dd5982 100644
--- a/target/nextflow/mapping/htseq_count/.config.vsh.yaml
+++ b/target/nextflow/mapping/htseq_count/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "htseq_count"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -346,7 +346,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -421,6 +421,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/htseq_count"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/htseq_count/htseq_count"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/htseq_count/main.nf b/target/nextflow/mapping/htseq_count/main.nf
index 953d3b59a42..ce020e4edd4 100644
--- a/target/nextflow/mapping/htseq_count/main.nf
+++ b/target/nextflow/mapping/htseq_count/main.nf
@@ -1,4 +1,4 @@
-// htseq_count 1.0.0rc2
+// htseq_count 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "htseq_count",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -3227,7 +3227,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3316,9 +3316,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/htseq_count",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3836,7 +3836,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_htseq_count",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/htseq_count/nextflow.config b/target/nextflow/mapping/htseq_count/nextflow.config
index 1c775992802..d8150faad29 100644
--- a/target/nextflow/mapping/htseq_count/nextflow.config
+++ b/target/nextflow/mapping/htseq_count/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/htseq_count'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Quantify gene expression for subsequent testing for differential expression.\n\nThis script takes one or more alignment files in SAM/BAM format and a feature file in GFF format and calculates for each feature the number of reads mapping to it. \n\nSee http://htseq.readthedocs.io/en/master/count.html for details.\n'
   author = 'Robrecht Cannoodt, Angela Oliveira Pisco'
 }
diff --git a/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml b/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml
index ec9c96f9d50..5812bd6a62e 100644
--- a/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "htseq_count_to_h5mu"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -137,7 +137,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -213,6 +213,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/htseq_count_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/htseq_count_to_h5mu/main.nf b/target/nextflow/mapping/htseq_count_to_h5mu/main.nf
index 15285ac0bf2..89729bdabd2 100644
--- a/target/nextflow/mapping/htseq_count_to_h5mu/main.nf
+++ b/target/nextflow/mapping/htseq_count_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// htseq_count_to_h5mu 1.0.0rc2
+// htseq_count_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "htseq_count_to_h5mu",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2972,7 +2972,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3062,9 +3062,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/htseq_count_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3569,7 +3569,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_htseq_count_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/htseq_count_to_h5mu/nextflow.config b/target/nextflow/mapping/htseq_count_to_h5mu/nextflow.config
index 0d237ad455c..bee2c658668 100644
--- a/target/nextflow/mapping/htseq_count_to_h5mu/nextflow.config
+++ b/target/nextflow/mapping/htseq_count_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/htseq_count_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert the htseq table to a h5mu.\n'
   author = 'Robrecht Cannoodt, Angela Oliveira Pisco'
 }
diff --git a/target/nextflow/mapping/multi_star/.config.vsh.yaml b/target/nextflow/mapping/multi_star/.config.vsh.yaml
index fa1665b2868..6aab3b19b5b 100644
--- a/target/nextflow/mapping/multi_star/.config.vsh.yaml
+++ b/target/nextflow/mapping/multi_star/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "multi_star"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -2987,7 +2987,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -3083,6 +3083,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/multi_star"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/multi_star/multi_star"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/multi_star/main.nf b/target/nextflow/mapping/multi_star/main.nf
index f59212df6c7..98e6d2ef9ae 100644
--- a/target/nextflow/mapping/multi_star/main.nf
+++ b/target/nextflow/mapping/multi_star/main.nf
@@ -1,4 +1,4 @@
-// multi_star 1.0.0rc2
+// multi_star 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "multi_star",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -4485,7 +4485,7 @@ meta = [
           },
           {
             "type" : "integer",
-            "name" : "--outSJfilte''' + '''rIntronMaxVsReadN",
+            "name" : "--outSJfilt''' + '''erIntronMaxVsReadN",
             "description" : "maximum gap allowed for junctions supported by 1,2,3,,,N reads\n\ni.e. by default junctions supported by 1 read can have gaps <=50000b, by 2 reads: <=100000b, by 3 reads: <=200000. by >=4 reads any gap <=alignIntronMax\ndoes not apply to annotated junctions",
             "info" : {
               "step" : "star",
@@ -6243,11 +6243,11 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
-      "setup_strategy''' + '''" : "ifneedbepullelsecachedbuild",
+      "setup_strate''' + '''gy" : "ifneedbepullelsecachedbuild",
       "target_image_source" : "https://github.com/openpipelines-bio/openpipeline",
       "setup" : [
         {
@@ -6358,9 +6358,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/multi_star",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -7356,7 +7356,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_multi_star",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/multi_star/nextflow.config b/target/nextflow/mapping/multi_star/nextflow.config
index 3ad42e0f316..fd7f876c4d7 100644
--- a/target/nextflow/mapping/multi_star/nextflow.config
+++ b/target/nextflow/mapping/multi_star/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/multi_star'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Align fastq files using STAR.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml b/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml
index b035d031926..60545afd5c6 100644
--- a/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "multi_star_to_h5mu"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -109,7 +109,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -183,6 +183,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/multi_star_to_h5mu"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/multi_star_to_h5mu/multi_star_to_h5mu"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/multi_star_to_h5mu/main.nf b/target/nextflow/mapping/multi_star_to_h5mu/main.nf
index 35911ef09ac..c65f52f506b 100644
--- a/target/nextflow/mapping/multi_star_to_h5mu/main.nf
+++ b/target/nextflow/mapping/multi_star_to_h5mu/main.nf
@@ -1,4 +1,4 @@
-// multi_star_to_h5mu 1.0.0rc2
+// multi_star_to_h5mu 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "multi_star_to_h5mu",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2934,7 +2934,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3022,9 +3022,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/multi_star_to_h5mu",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3484,7 +3484,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_multi_star_to_h5mu",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/mapping/multi_star_to_h5mu/nextflow.config b/target/nextflow/mapping/multi_star_to_h5mu/nextflow.config
index 87c3e826291..0a3daae2a2e 100644
--- a/target/nextflow/mapping/multi_star_to_h5mu/nextflow.config
+++ b/target/nextflow/mapping/multi_star_to_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/multi_star_to_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert the output of `multi_star` to a h5mu.\n'
   author = 'Robrecht Cannoodt, Angela Oliveira Pisco'
 }
diff --git a/target/nextflow/mapping/samtools_sort/.config.vsh.yaml b/target/nextflow/mapping/samtools_sort/.config.vsh.yaml
index 15cfe1cfbe5..737478f6e69 100644
--- a/target/nextflow/mapping/samtools_sort/.config.vsh.yaml
+++ b/target/nextflow/mapping/samtools_sort/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "samtools_sort"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -200,7 +200,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -273,6 +273,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/samtools_sort"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/samtools_sort/samtools_sort"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/samtools_sort/main.nf b/target/nextflow/mapping/samtools_sort/main.nf
index c9862f2c31c..b9345c33143 100644
--- a/target/nextflow/mapping/samtools_sort/main.nf
+++ b/target/nextflow/mapping/samtools_sort/main.nf
@@ -1,4 +1,4 @@
-// samtools_sort 1.0.0rc2
+// samtools_sort 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "samtools_sort",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -3046,7 +3046,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3133,9 +3133,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/samtools_sort",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3598,7 +3598,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_samtools_sort",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/samtools_sort/nextflow.config b/target/nextflow/mapping/samtools_sort/nextflow.config
index 555de1d1f17..f995cd74a1f 100644
--- a/target/nextflow/mapping/samtools_sort/nextflow.config
+++ b/target/nextflow/mapping/samtools_sort/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/samtools_sort'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Sort and (optionally) index alignments.\n\nReads are sorted by leftmost coordinates, or by read name when `--sort_by_read_names` is used.\n\nAn appropriate `@HD-SO` sort order header tag will be added or an existing one updated if necessary.\n\nNote that to generate an index file (by specifying `--output_bai`), the default coordinate sort must be used.\nThus the `--sort_by_read_names` and `--sort_by <TAG>` options are incompatible with `--output_bai`. \n'
   author = 'Robrecht Cannoodt, Angela Oliveira Pisco'
 }
diff --git a/target/nextflow/mapping/star_align/.config.vsh.yaml b/target/nextflow/mapping/star_align/.config.vsh.yaml
index 2359363b5a9..04192d83336 100644
--- a/target/nextflow/mapping/star_align/.config.vsh.yaml
+++ b/target/nextflow/mapping/star_align/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "star_align"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -2459,7 +2459,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -2538,6 +2538,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_align"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_align/star_align"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/star_align/main.nf b/target/nextflow/mapping/star_align/main.nf
index 597da894b27..1b354126089 100644
--- a/target/nextflow/mapping/star_align/main.nf
+++ b/target/nextflow/mapping/star_align/main.nf
@@ -1,4 +1,4 @@
-// star_align 1.0.0rc2
+// star_align 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "star_align",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -4428,7 +4428,7 @@ meta = [
             "type" : "integer",
             "name" : "--alignSJoverhangMin",
             "description" : "minimum overhang (i.e. block size) for spliced alignments",
-            "exam''' + '''ple" : [
+            "exa''' + '''mple" : [
               5
             ],
             "required" : false,
@@ -5316,7 +5316,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -5407,9 +5407,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_align",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -6145,7 +6145,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_star_align",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/star_align/nextflow.config b/target/nextflow/mapping/star_align/nextflow.config
index 9bad5f95448..0fe9491e67c 100644
--- a/target/nextflow/mapping/star_align/nextflow.config
+++ b/target/nextflow/mapping/star_align/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/star_align'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Align fastq files using STAR.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml b/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml
index 68ba8acafca..aeb32eb61ad 100644
--- a/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml
+++ b/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "star_align_v273a"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -2459,7 +2459,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -2538,6 +2538,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_align_v273a"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_align_v273a/star_align_v273a"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/star_align_v273a/main.nf b/target/nextflow/mapping/star_align_v273a/main.nf
index 3e65b32e558..d27ec4216f9 100644
--- a/target/nextflow/mapping/star_align_v273a/main.nf
+++ b/target/nextflow/mapping/star_align_v273a/main.nf
@@ -1,4 +1,4 @@
-// star_align_v273a 1.0.0rc2
+// star_align_v273a 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "star_align_v273a",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -4429,7 +4429,7 @@ meta = [
             "name" : "--alignSJoverhangMin",
             "description" : "minimum overhang (i.e. block size) for spliced alignments",
             "example" : [
-            ''' + '''  5
+           ''' + '''   5
             ],
             "required" : false,
             "direction" : "input",
@@ -5316,7 +5316,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -5407,9 +5407,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_align_v273a",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -6145,7 +6145,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_star_align_v273a",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/star_align_v273a/nextflow.config b/target/nextflow/mapping/star_align_v273a/nextflow.config
index 6e458defd75..0565c68c331 100644
--- a/target/nextflow/mapping/star_align_v273a/nextflow.config
+++ b/target/nextflow/mapping/star_align_v273a/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/star_align_v273a'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Align fastq files using STAR.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/mapping/star_build_reference/.config.vsh.yaml b/target/nextflow/mapping/star_build_reference/.config.vsh.yaml
index 39efaf4bbea..0c61e72036b 100644
--- a/target/nextflow/mapping/star_build_reference/.config.vsh.yaml
+++ b/target/nextflow/mapping/star_build_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "star_build_reference"
   namespace: "mapping"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -114,7 +114,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -193,6 +193,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_build_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_build_reference/star_build_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/mapping/star_build_reference/main.nf b/target/nextflow/mapping/star_build_reference/main.nf
index 401fb45d63f..227c1839ea0 100644
--- a/target/nextflow/mapping/star_build_reference/main.nf
+++ b/target/nextflow/mapping/star_build_reference/main.nf
@@ -1,4 +1,4 @@
-// star_build_reference 1.0.0rc2
+// star_build_reference 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "star_build_reference",
     "namespace" : "mapping",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2926,7 +2926,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3017,9 +3017,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_build_reference",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3544,7 +3544,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/mapping_star_build_reference",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/mapping/star_build_reference/nextflow.config b/target/nextflow/mapping/star_build_reference/nextflow.config
index 59a17edcbc0..e80123fc3ae 100644
--- a/target/nextflow/mapping/star_build_reference/nextflow.config
+++ b/target/nextflow/mapping/star_build_reference/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'mapping/star_build_reference'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Create a reference for STAR from a set of fasta files.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/metadata/add_id/.config.vsh.yaml b/target/nextflow/metadata/add_id/.config.vsh.yaml
index 082e7cd7378..089d3702b56 100644
--- a/target/nextflow/metadata/add_id/.config.vsh.yaml
+++ b/target/nextflow/metadata/add_id/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "add_id"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -119,7 +119,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -209,6 +209,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/add_id"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/add_id/add_id"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/metadata/add_id/main.nf b/target/nextflow/metadata/add_id/main.nf
index 0a2a94986e1..b746c09e3d0 100644
--- a/target/nextflow/metadata/add_id/main.nf
+++ b/target/nextflow/metadata/add_id/main.nf
@@ -1,4 +1,4 @@
-// add_id 1.0.0rc2
+// add_id 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "add_id",
     "namespace" : "metadata",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2938,7 +2938,7 @@ meta = [
       "image" : "python:3.11-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3054,9 +3054,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/add_id",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3517,7 +3517,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/metadata_add_id",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/metadata/add_id/nextflow.config b/target/nextflow/metadata/add_id/nextflow.config
index ab10941804d..32658331fbe 100644
--- a/target/nextflow/metadata/add_id/nextflow.config
+++ b/target/nextflow/metadata/add_id/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'metadata/add_id'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Add id of .obs. Also allows to make .obs_names (the .obs index) unique \nby prefixing the values with an unique id per .h5mu file.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml b/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml
index 3a869069022..60f449467ff 100644
--- a/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml
+++ b/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "grep_annotation_column"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -177,7 +177,7 @@ platforms:
   image: "python:3.11-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -267,6 +267,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/grep_annotation_column"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/grep_annotation_column/grep_annotation_column"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/metadata/grep_annotation_column/main.nf b/target/nextflow/metadata/grep_annotation_column/main.nf
index 54caaaa9d13..898cb74e3dc 100644
--- a/target/nextflow/metadata/grep_annotation_column/main.nf
+++ b/target/nextflow/metadata/grep_annotation_column/main.nf
@@ -1,4 +1,4 @@
-// grep_annotation_column 1.0.0rc2
+// grep_annotation_column 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "grep_annotation_column",
     "namespace" : "metadata",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3004,7 +3004,7 @@ meta = [
       "image" : "python:3.11-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3120,9 +3120,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/grep_annotation_column",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3629,7 +3629,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/metadata_grep_annotation_column",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/metadata/grep_annotation_column/nextflow.config b/target/nextflow/metadata/grep_annotation_column/nextflow.config
index 8501737af36..51a67a542df 100644
--- a/target/nextflow/metadata/grep_annotation_column/nextflow.config
+++ b/target/nextflow/metadata/grep_annotation_column/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'metadata/grep_annotation_column'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Perform a regex lookup on a column from the annotation matrices .obs or .var.\nThe annotation matrix can originate from either a modality, or all modalities (global .var or .obs).\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/metadata/join_csv/.config.vsh.yaml b/target/nextflow/metadata/join_csv/.config.vsh.yaml
index ab2e3c43b64..ac56d3697b1 100644
--- a/target/nextflow/metadata/join_csv/.config.vsh.yaml
+++ b/target/nextflow/metadata/join_csv/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "join_csv"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -153,7 +153,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -233,6 +233,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/join_csv"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/join_csv/join_csv"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/metadata/join_csv/main.nf b/target/nextflow/metadata/join_csv/main.nf
index 145f7e32712..a0c8fba4034 100644
--- a/target/nextflow/metadata/join_csv/main.nf
+++ b/target/nextflow/metadata/join_csv/main.nf
@@ -1,4 +1,4 @@
-// join_csv 1.0.0rc2
+// join_csv 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "join_csv",
     "namespace" : "metadata",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2979,7 +2979,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3077,9 +3077,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/join_csv",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3529,7 +3529,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/metadata_join_csv",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/metadata/join_csv/nextflow.config b/target/nextflow/metadata/join_csv/nextflow.config
index 59126cdee9f..5d6aa780ad0 100644
--- a/target/nextflow/metadata/join_csv/nextflow.config
+++ b/target/nextflow/metadata/join_csv/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'metadata/join_csv'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Join a csv containing metadata to the .obs or .var field of a mudata file.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml b/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml
index 48caa24e52e..613315eee0f 100644
--- a/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml
+++ b/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "join_uns_to_obs"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -95,7 +95,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -175,6 +175,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/join_uns_to_obs"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/join_uns_to_obs/join_uns_to_obs"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/metadata/join_uns_to_obs/main.nf b/target/nextflow/metadata/join_uns_to_obs/main.nf
index 25d0579210a..6c2c189d206 100644
--- a/target/nextflow/metadata/join_uns_to_obs/main.nf
+++ b/target/nextflow/metadata/join_uns_to_obs/main.nf
@@ -1,4 +1,4 @@
-// join_uns_to_obs 1.0.0rc2
+// join_uns_to_obs 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2774,7 +2774,7 @@ meta = [
   "functionality" : {
     "name" : "join_uns_to_obs",
     "namespace" : "metadata",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "arguments" : [
       {
         "type" : "file",
@@ -2898,7 +2898,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2996,9 +2996,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/join_uns_to_obs",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3436,7 +3436,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/metadata_join_uns_to_obs",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/metadata/join_uns_to_obs/nextflow.config b/target/nextflow/metadata/join_uns_to_obs/nextflow.config
index f2a64f942e2..156e516efef 100644
--- a/target/nextflow/metadata/join_uns_to_obs/nextflow.config
+++ b/target/nextflow/metadata/join_uns_to_obs/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'metadata/join_uns_to_obs'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Join a data frame of length 1 (1 row index value) in .uns containing metadata to the .obs of a mudata file.'
 }
 
diff --git a/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml b/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml
index 493f37efe22..d4223e1aa8b 100644
--- a/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml
+++ b/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "move_obsm_to_obs"
   namespace: "metadata"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -116,7 +116,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -196,6 +196,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs/move_obsm_to_obs"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/metadata/move_obsm_to_obs/main.nf b/target/nextflow/metadata/move_obsm_to_obs/main.nf
index 903b23c050f..c33b18bce90 100644
--- a/target/nextflow/metadata/move_obsm_to_obs/main.nf
+++ b/target/nextflow/metadata/move_obsm_to_obs/main.nf
@@ -1,4 +1,4 @@
-// move_obsm_to_obs 1.0.0rc2
+// move_obsm_to_obs 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "move_obsm_to_obs",
     "namespace" : "metadata",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2936,7 +2936,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3034,9 +3034,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3487,7 +3487,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/metadata_move_obsm_to_obs",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/metadata/move_obsm_to_obs/nextflow.config b/target/nextflow/metadata/move_obsm_to_obs/nextflow.config
index fa3d3943e37..b6e6734758a 100644
--- a/target/nextflow/metadata/move_obsm_to_obs/nextflow.config
+++ b/target/nextflow/metadata/move_obsm_to_obs/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'metadata/move_obsm_to_obs'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Move a matrix from .obsm to .obs. Newly created columns in .obs will \nbe created from the .obsm key suffixed with an underscore and the name of the columns\nof the specified .obsm matrix.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/neighbors/bbknn/.config.vsh.yaml b/target/nextflow/neighbors/bbknn/.config.vsh.yaml
index b81f6e96b03..76fc88ff180 100644
--- a/target/nextflow/neighbors/bbknn/.config.vsh.yaml
+++ b/target/nextflow/neighbors/bbknn/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bbknn"
   namespace: "neighbors"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -209,7 +209,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -294,6 +294,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/bbknn"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/bbknn/bbknn"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/neighbors/bbknn/main.nf b/target/nextflow/neighbors/bbknn/main.nf
index 53f1ae44622..a56a18b7d69 100644
--- a/target/nextflow/neighbors/bbknn/main.nf
+++ b/target/nextflow/neighbors/bbknn/main.nf
@@ -1,4 +1,4 @@
-// bbknn 1.0.0rc2
+// bbknn 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "bbknn",
     "namespace" : "neighbors",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3036,7 +3036,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3139,9 +3139,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/bbknn",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3566,7 +3566,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/neighbors_bbknn",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowcpu",
diff --git a/target/nextflow/neighbors/bbknn/nextflow.config b/target/nextflow/neighbors/bbknn/nextflow.config
index 43a40da0ca9..6068365668f 100644
--- a/target/nextflow/neighbors/bbknn/nextflow.config
+++ b/target/nextflow/neighbors/bbknn/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'neighbors/bbknn'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'BBKNN network generation\n'
   author = 'Dries De Maeyer, Dries Schaumont'
 }
diff --git a/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml b/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml
index 205f74e62b2..70990bb69ba 100644
--- a/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml
+++ b/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "find_neighbors"
   namespace: "neighbors"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -232,7 +232,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -314,6 +314,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors/find_neighbors"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/neighbors/find_neighbors/main.nf b/target/nextflow/neighbors/find_neighbors/main.nf
index 2b4ab6029f9..63f677357f0 100644
--- a/target/nextflow/neighbors/find_neighbors/main.nf
+++ b/target/nextflow/neighbors/find_neighbors/main.nf
@@ -1,4 +1,4 @@
-// find_neighbors 1.0.0rc2
+// find_neighbors 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "find_neighbors",
     "namespace" : "neighbors",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3064,7 +3064,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3164,9 +3164,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3619,7 +3619,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/neighbors_find_neighbors",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowcpu",
diff --git a/target/nextflow/neighbors/find_neighbors/nextflow.config b/target/nextflow/neighbors/find_neighbors/nextflow.config
index 6435fb24bf7..d225faf8bd4 100644
--- a/target/nextflow/neighbors/find_neighbors/nextflow.config
+++ b/target/nextflow/neighbors/find_neighbors/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'neighbors/find_neighbors'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Compute a neighborhood graph of observations [McInnes18].\n\nThe neighbor search efficiency of this heavily relies on UMAP [McInnes18], which also provides a method for estimating connectivities of data points - the connectivity of the manifold (method==\'umap\'). If method==\'gauss\', connectivities are computed according to [Coifman05], in the adaption of [Haghverdi16].\n'
   author = 'Dries De Maeyer, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml b/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml
index d29d9cb8fb8..06b543b68d9 100644
--- a/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml
+++ b/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "filter_10xh5"
   namespace: "process_10xh5"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -118,7 +118,7 @@ platforms:
   image: "eddelbuettel/r2u:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -200,6 +200,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/process_10xh5/filter_10xh5"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/process_10xh5/filter_10xh5/filter_10xh5"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/process_10xh5/filter_10xh5/main.nf b/target/nextflow/process_10xh5/filter_10xh5/main.nf
index f4ec54c212b..985f8383fb7 100644
--- a/target/nextflow/process_10xh5/filter_10xh5/main.nf
+++ b/target/nextflow/process_10xh5/filter_10xh5/main.nf
@@ -1,4 +1,4 @@
-// filter_10xh5 1.0.0rc2
+// filter_10xh5 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "filter_10xh5",
     "namespace" : "process_10xh5",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2933,7 +2933,7 @@ meta = [
       "image" : "eddelbuettel/r2u:22.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3032,9 +3032,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/process_10xh5/filter_10xh5",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3502,7 +3502,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/process_10xh5_filter_10xh5",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/process_10xh5/filter_10xh5/nextflow.config b/target/nextflow/process_10xh5/filter_10xh5/nextflow.config
index 05bf9dea475..5eee9b40d44 100644
--- a/target/nextflow/process_10xh5/filter_10xh5/nextflow.config
+++ b/target/nextflow/process_10xh5/filter_10xh5/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'process_10xh5/filter_10xh5'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Filter a 10x h5 dataset.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml b/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml
index d651e6bdbd5..c56198c6482 100644
--- a/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml
+++ b/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "calculate_qc_metrics"
   namespace: "qc"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -237,7 +237,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -320,6 +320,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/calculate_qc_metrics"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/calculate_qc_metrics/calculate_qc_metrics"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/qc/calculate_qc_metrics/main.nf b/target/nextflow/qc/calculate_qc_metrics/main.nf
index de4f12f61cb..1e14080e07b 100644
--- a/target/nextflow/qc/calculate_qc_metrics/main.nf
+++ b/target/nextflow/qc/calculate_qc_metrics/main.nf
@@ -1,4 +1,4 @@
-// calculate_qc_metrics 1.0.0rc2
+// calculate_qc_metrics 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "calculate_qc_metrics",
     "namespace" : "qc",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3058,7 +3058,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3159,9 +3159,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/calculate_qc_metrics",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3703,7 +3703,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/qc_calculate_qc_metrics",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/qc/calculate_qc_metrics/nextflow.config b/target/nextflow/qc/calculate_qc_metrics/nextflow.config
index 221eb8e03d4..e2debfec24b 100644
--- a/target/nextflow/qc/calculate_qc_metrics/nextflow.config
+++ b/target/nextflow/qc/calculate_qc_metrics/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'qc/calculate_qc_metrics'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Add basic quality control metrics to an .h5mu file.\n\nThe metrics are comparable to what scanpy.pp.calculate_qc_metrics output,\nalthough they have slightly different names:\n\nVar metrics (name in this component -> name in scanpy):\n  - pct_dropout -> pct_dropout_by_{expr_type}\n  - num_nonzero_obs -> n_cells_by_{expr_type}\n  - obs_mean -> mean_{expr_type}\n  - total_counts -> total_{expr_type}\n\nObs metrics:\n  - num_nonzero_vars -> n_genes_by_{expr_type}\n  - pct_{var_qc_metrics} -> pct_{expr_type}_{qc_var}\n  - total_counts_{var_qc_metrics} -> total_{expr_type}_{qc_var}\n  - pct_of_counts_in_top_{top_n_vars}_vars -> pct_{expr_type}_in_top_{n}_{var_type}\n  - total_counts -> total_{expr_type}\n  \n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/qc/fastqc/.config.vsh.yaml b/target/nextflow/qc/fastqc/.config.vsh.yaml
index 1f195bd4b34..d64c39254b7 100644
--- a/target/nextflow/qc/fastqc/.config.vsh.yaml
+++ b/target/nextflow/qc/fastqc/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "fastqc"
   namespace: "qc"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "string"
     name: "--mode"
@@ -92,7 +92,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -159,6 +159,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/fastqc"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/fastqc/fastqc"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/qc/fastqc/main.nf b/target/nextflow/qc/fastqc/main.nf
index 9cba62447a8..2095410818a 100644
--- a/target/nextflow/qc/fastqc/main.nf
+++ b/target/nextflow/qc/fastqc/main.nf
@@ -1,4 +1,4 @@
-// fastqc 1.0.0rc2
+// fastqc 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2774,7 +2774,7 @@ meta = [
   "functionality" : {
     "name" : "fastqc",
     "namespace" : "qc",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "arguments" : [
       {
         "type" : "string",
@@ -2893,7 +2893,7 @@ meta = [
       "image" : "ubuntu:22.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2971,9 +2971,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/fastqc",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3367,7 +3367,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/qc_fastqc",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowcpu",
diff --git a/target/nextflow/qc/fastqc/nextflow.config b/target/nextflow/qc/fastqc/nextflow.config
index 404078944bd..d68860aa504 100644
--- a/target/nextflow/qc/fastqc/nextflow.config
+++ b/target/nextflow/qc/fastqc/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'qc/fastqc'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Fastqc component, please see https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. This component can take one or more files (by means of shell globbing) or a complete directory.\n'
 }
 
diff --git a/target/nextflow/qc/multiqc/.config.vsh.yaml b/target/nextflow/qc/multiqc/.config.vsh.yaml
index 18fca989e83..7b0495a5531 100644
--- a/target/nextflow/qc/multiqc/.config.vsh.yaml
+++ b/target/nextflow/qc/multiqc/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "multiqc"
   namespace: "qc"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -65,7 +65,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -143,6 +143,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/multiqc"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/multiqc/multiqc"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/qc/multiqc/main.nf b/target/nextflow/qc/multiqc/main.nf
index 200f5acff4c..c78a7ceef64 100644
--- a/target/nextflow/qc/multiqc/main.nf
+++ b/target/nextflow/qc/multiqc/main.nf
@@ -1,4 +1,4 @@
-// multiqc 1.0.0rc2
+// multiqc 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2774,7 +2774,7 @@ meta = [
   "functionality" : {
     "name" : "multiqc",
     "namespace" : "qc",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "arguments" : [
       {
         "type" : "file",
@@ -2860,7 +2860,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2956,9 +2956,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/multiqc",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3351,7 +3351,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/qc_multiqc",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/qc/multiqc/nextflow.config b/target/nextflow/qc/multiqc/nextflow.config
index 7c6cb4515e7..2f6aac24af2 100644
--- a/target/nextflow/qc/multiqc/nextflow.config
+++ b/target/nextflow/qc/multiqc/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'qc/multiqc'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'MultiQC aggregates results from bioinformatics analyses across many samples into a single report.\nIt searches a given directory for analysis logs and compiles a HTML report. It\'s a general use tool, perfect for summarising the output from numerous bioinformatics tools.\n'
 }
 
diff --git a/target/nextflow/query/cellxgene_census/.config.vsh.yaml b/target/nextflow/query/cellxgene_census/.config.vsh.yaml
index ccfe43d314c..b82589233e1 100644
--- a/target/nextflow/query/cellxgene_census/.config.vsh.yaml
+++ b/target/nextflow/query/cellxgene_census/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellxgene_census"
   namespace: "query"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Matthias Beyens"
     info:
@@ -186,7 +186,7 @@ platforms:
   image: "python:3.9"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -264,6 +264,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/query/cellxgene_census"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/query/cellxgene_census/cellxgene_census"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/query/cellxgene_census/main.nf b/target/nextflow/query/cellxgene_census/main.nf
index 6ceb6cdb882..4c19eb6b901 100644
--- a/target/nextflow/query/cellxgene_census/main.nf
+++ b/target/nextflow/query/cellxgene_census/main.nf
@@ -1,4 +1,4 @@
-// cellxgene_census 1.0.0rc2
+// cellxgene_census 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "cellxgene_census",
     "namespace" : "query",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Matthias Beyens",
@@ -3024,7 +3024,7 @@ meta = [
       "image" : "python:3.9",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3117,9 +3117,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/query/cellxgene_census",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3662,7 +3662,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/query_cellxgene_census",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/query/cellxgene_census/nextflow.config b/target/nextflow/query/cellxgene_census/nextflow.config
index 5b8c6ddbba4..5917c1b615f 100644
--- a/target/nextflow/query/cellxgene_census/nextflow.config
+++ b/target/nextflow/query/cellxgene_census/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'query/cellxgene_census'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Query CellxGene Census or user-specified TileDBSoma object, and eventually fetch cell and gene metadata or/and expression counts.'
   author = 'Matthias Beyens, Dries De Maeyer'
 }
diff --git a/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml b/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml
index 0ff8f0ff15e..7d3604eafe6 100644
--- a/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml
+++ b/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "build_bdrhap_reference"
   namespace: "reference"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -107,7 +107,7 @@ platforms:
   image: "bdgenomics/rhapsody:1.10.1"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -188,6 +188,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_bdrhap_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_bdrhap_reference/build_bdrhap_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/reference/build_bdrhap_reference/main.nf b/target/nextflow/reference/build_bdrhap_reference/main.nf
index 00be939d8cd..32e40d6f319 100644
--- a/target/nextflow/reference/build_bdrhap_reference/main.nf
+++ b/target/nextflow/reference/build_bdrhap_reference/main.nf
@@ -1,4 +1,4 @@
-// build_bdrhap_reference 1.0.0rc2
+// build_bdrhap_reference 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "build_bdrhap_reference",
     "namespace" : "reference",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -2929,7 +2929,7 @@ meta = [
       "image" : "bdgenomics/rhapsody:1.10.1",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3023,9 +3023,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_bdrhap_reference",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3445,7 +3445,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/reference_build_bdrhap_reference",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/reference/build_bdrhap_reference/nextflow.config b/target/nextflow/reference/build_bdrhap_reference/nextflow.config
index 8e074f12366..13356b6779b 100644
--- a/target/nextflow/reference/build_bdrhap_reference/nextflow.config
+++ b/target/nextflow/reference/build_bdrhap_reference/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'reference/build_bdrhap_reference'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Compile a reference into a STAR index compatible with the BD Rhapsody pipeline.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml b/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml
index 3ab26b95610..06d0c190bb5 100644
--- a/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml
+++ b/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "build_cellranger_reference"
   namespace: "reference"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -107,7 +107,7 @@ platforms:
   image: "ghcr.io/data-intuitive/cellranger:7.0"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -188,6 +188,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_cellranger_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_cellranger_reference/build_cellranger_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/reference/build_cellranger_reference/main.nf b/target/nextflow/reference/build_cellranger_reference/main.nf
index cd6d827dbdc..7a81d665f98 100644
--- a/target/nextflow/reference/build_cellranger_reference/main.nf
+++ b/target/nextflow/reference/build_cellranger_reference/main.nf
@@ -1,4 +1,4 @@
-// build_cellranger_reference 1.0.0rc2
+// build_cellranger_reference 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "build_cellranger_reference",
     "namespace" : "reference",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -2929,7 +2929,7 @@ meta = [
       "image" : "ghcr.io/data-intuitive/cellranger:7.0",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3023,9 +3023,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_cellranger_reference",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3449,7 +3449,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/reference_build_cellranger_reference",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/reference/build_cellranger_reference/nextflow.config b/target/nextflow/reference/build_cellranger_reference/nextflow.config
index 4e3d673f609..815a110d989 100644
--- a/target/nextflow/reference/build_cellranger_reference/nextflow.config
+++ b/target/nextflow/reference/build_cellranger_reference/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'reference/build_cellranger_reference'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Build a Cell Ranger-compatible reference folder from user-supplied genome FASTA and gene GTF files. Creates a new folder named after the genome.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/reference/make_reference/.config.vsh.yaml b/target/nextflow/reference/make_reference/.config.vsh.yaml
index 6a5db7355f2..8e15b9fc930 100644
--- a/target/nextflow/reference/make_reference/.config.vsh.yaml
+++ b/target/nextflow/reference/make_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "make_reference"
   namespace: "reference"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -144,7 +144,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -215,6 +215,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/make_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/make_reference/make_reference"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/reference/make_reference/main.nf b/target/nextflow/reference/make_reference/main.nf
index 2b21836ab9e..857c5751327 100644
--- a/target/nextflow/reference/make_reference/main.nf
+++ b/target/nextflow/reference/make_reference/main.nf
@@ -1,4 +1,4 @@
-// make_reference 1.0.0rc2
+// make_reference 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "make_reference",
     "namespace" : "reference",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -2967,7 +2967,7 @@ meta = [
       "image" : "ubuntu:22.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3049,9 +3049,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/make_reference",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3490,7 +3490,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/reference_make_reference",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/reference/make_reference/nextflow.config b/target/nextflow/reference/make_reference/nextflow.config
index 48fac3dc0aa..30b8fed3d84 100644
--- a/target/nextflow/reference/make_reference/nextflow.config
+++ b/target/nextflow/reference/make_reference/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'reference/make_reference'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Preprocess and build a transcriptome reference.\n\nExample input files are:\n  - `genome_fasta`: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_41/GRCh38.primary_assembly.genome.fa.gz\n  - `transcriptome_gtf`: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_41/gencode.v41.annotation.gtf.gz\n  - `ercc`: https://assets.thermofisher.com/TFS-Assets/LSG/manuals/ERCC92.zip\n'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/report/mermaid/.config.vsh.yaml b/target/nextflow/report/mermaid/.config.vsh.yaml
index 25b8ac15461..6251b7625c6 100644
--- a/target/nextflow/report/mermaid/.config.vsh.yaml
+++ b/target/nextflow/report/mermaid/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "mermaid"
   namespace: "report"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -121,7 +121,7 @@ platforms:
   image: "node:20-bullseye"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -188,6 +188,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/report/mermaid"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/report/mermaid/mermaid"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/report/mermaid/main.nf b/target/nextflow/report/mermaid/main.nf
index aa5557ee8b9..867e56090ee 100644
--- a/target/nextflow/report/mermaid/main.nf
+++ b/target/nextflow/report/mermaid/main.nf
@@ -1,4 +1,4 @@
-// mermaid 1.0.0rc2
+// mermaid 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "mermaid",
     "namespace" : "report",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -2937,7 +2937,7 @@ meta = [
       "image" : "node:20-bullseye",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3017,9 +3017,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/report/mermaid",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3413,7 +3413,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/report_mermaid",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "tag" : "$id"
 }'''),
diff --git a/target/nextflow/report/mermaid/nextflow.config b/target/nextflow/report/mermaid/nextflow.config
index b89ea3a9f05..74a69a44fc4 100644
--- a/target/nextflow/report/mermaid/nextflow.config
+++ b/target/nextflow/report/mermaid/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'report/mermaid'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Generates a network from mermaid code.\n'
   author = 'Dries De Maeyer'
 }
diff --git a/target/nextflow/transfer/publish/.config.vsh.yaml b/target/nextflow/transfer/publish/.config.vsh.yaml
index 5f37f6e6136..e513334764e 100644
--- a/target/nextflow/transfer/publish/.config.vsh.yaml
+++ b/target/nextflow/transfer/publish/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "publish"
   namespace: "transfer"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Toni Verbeiren"
     roles:
@@ -69,7 +69,7 @@ platforms:
   image: "ubuntu:22.04"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -128,6 +128,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish/publish"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transfer/publish/main.nf b/target/nextflow/transfer/publish/main.nf
index 284b965a53e..9e3e30ccf7f 100644
--- a/target/nextflow/transfer/publish/main.nf
+++ b/target/nextflow/transfer/publish/main.nf
@@ -1,4 +1,4 @@
-// publish 1.0.0rc2
+// publish 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "publish",
     "namespace" : "transfer",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Toni Verbeiren",
@@ -2874,7 +2874,7 @@ meta = [
       "image" : "ubuntu:22.04",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -2939,9 +2939,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3333,7 +3333,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transfer_publish",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "tag" : "$id"
 }'''),
diff --git a/target/nextflow/transfer/publish/nextflow.config b/target/nextflow/transfer/publish/nextflow.config
index fa691ddc3cf..550e0586a79 100644
--- a/target/nextflow/transfer/publish/nextflow.config
+++ b/target/nextflow/transfer/publish/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transfer/publish'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Publish an artifact and optionally rename with parameters'
   author = 'Toni Verbeiren'
 }
diff --git a/target/nextflow/transform/clr/.config.vsh.yaml b/target/nextflow/transform/clr/.config.vsh.yaml
index 18d5b8adfc4..0afd3f10553 100644
--- a/target/nextflow/transform/clr/.config.vsh.yaml
+++ b/target/nextflow/transform/clr/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "clr"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -119,7 +119,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -202,6 +202,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/clr"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/clr/clr"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transform/clr/main.nf b/target/nextflow/transform/clr/main.nf
index 48f733ef995..2975a242140 100644
--- a/target/nextflow/transform/clr/main.nf
+++ b/target/nextflow/transform/clr/main.nf
@@ -1,4 +1,4 @@
-// clr 1.0.0rc2
+// clr 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "clr",
     "namespace" : "transform",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2936,7 +2936,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3037,9 +3037,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/clr",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3459,7 +3459,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transform_clr",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/transform/clr/nextflow.config b/target/nextflow/transform/clr/nextflow.config
index f640277b93d..4a1d2d7f55e 100644
--- a/target/nextflow/transform/clr/nextflow.config
+++ b/target/nextflow/transform/clr/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transform/clr'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Perform CLR normalization on CITE-seq data (Stoeckius et al., 2017).\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/transform/delete_layer/.config.vsh.yaml b/target/nextflow/transform/delete_layer/.config.vsh.yaml
index d5ac32b01a8..fd4495b0e48 100644
--- a/target/nextflow/transform/delete_layer/.config.vsh.yaml
+++ b/target/nextflow/transform/delete_layer/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "delete_layer"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -120,7 +120,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -200,6 +200,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/delete_layer"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/delete_layer/delete_layer"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transform/delete_layer/main.nf b/target/nextflow/transform/delete_layer/main.nf
index 43ba8dc08a8..b63fb7ea313 100644
--- a/target/nextflow/transform/delete_layer/main.nf
+++ b/target/nextflow/transform/delete_layer/main.nf
@@ -1,4 +1,4 @@
-// delete_layer 1.0.0rc2
+// delete_layer 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "delete_layer",
     "namespace" : "transform",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2943,7 +2943,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3041,9 +3041,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/delete_layer",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3540,7 +3540,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transform_delete_layer",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/transform/delete_layer/nextflow.config b/target/nextflow/transform/delete_layer/nextflow.config
index c75357b3aa3..5881c513f7c 100644
--- a/target/nextflow/transform/delete_layer/nextflow.config
+++ b/target/nextflow/transform/delete_layer/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transform/delete_layer'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Delete an anndata layer from one or more modalities.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/transform/log1p/.config.vsh.yaml b/target/nextflow/transform/log1p/.config.vsh.yaml
index c71f30bb5a8..bab9236afdf 100644
--- a/target/nextflow/transform/log1p/.config.vsh.yaml
+++ b/target/nextflow/transform/log1p/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "log1p"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -148,7 +148,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -230,6 +230,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/log1p"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/log1p/log1p"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transform/log1p/main.nf b/target/nextflow/transform/log1p/main.nf
index a1b746724af..ec6e883e99b 100644
--- a/target/nextflow/transform/log1p/main.nf
+++ b/target/nextflow/transform/log1p/main.nf
@@ -1,4 +1,4 @@
-// log1p 1.0.0rc2
+// log1p 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "log1p",
     "namespace" : "transform",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -2980,7 +2980,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3080,9 +3080,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/log1p",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3528,7 +3528,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transform_log1p",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/transform/log1p/nextflow.config b/target/nextflow/transform/log1p/nextflow.config
index 7e50c0a57e6..1a95afd43a5 100644
--- a/target/nextflow/transform/log1p/nextflow.config
+++ b/target/nextflow/transform/log1p/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transform/log1p'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Logarithmize the data matrix. Computes X = log(X + 1), where log denotes the natural logarithm unless a different base is given.\n'
   author = 'Dries De Maeyer, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/transform/move_layer/.config.vsh.yaml b/target/nextflow/transform/move_layer/.config.vsh.yaml
index 8a006d0e090..2e8e4c940fc 100644
--- a/target/nextflow/transform/move_layer/.config.vsh.yaml
+++ b/target/nextflow/transform/move_layer/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "move_layer"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   arguments:
   - type: "file"
     name: "--input"
@@ -103,7 +103,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -183,6 +183,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/move_layer"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/move_layer/move_layer"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transform/move_layer/main.nf b/target/nextflow/transform/move_layer/main.nf
index 2c5fd2e8c92..90aaf86ba8f 100644
--- a/target/nextflow/transform/move_layer/main.nf
+++ b/target/nextflow/transform/move_layer/main.nf
@@ -1,4 +1,4 @@
-// move_layer 1.0.0rc2
+// move_layer 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2774,7 +2774,7 @@ meta = [
   "functionality" : {
     "name" : "move_layer",
     "namespace" : "transform",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "arguments" : [
       {
         "type" : "file",
@@ -2907,7 +2907,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3005,9 +3005,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/move_layer",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3447,7 +3447,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transform_move_layer",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "singlecpu",
diff --git a/target/nextflow/transform/move_layer/nextflow.config b/target/nextflow/transform/move_layer/nextflow.config
index 64297517f2d..1e7423f8ac5 100644
--- a/target/nextflow/transform/move_layer/nextflow.config
+++ b/target/nextflow/transform/move_layer/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transform/move_layer'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Move a data matrix stored at the .layers or .X attributes in a MuData object to another layer.'
 }
 
diff --git a/target/nextflow/transform/normalize_total/.config.vsh.yaml b/target/nextflow/transform/normalize_total/.config.vsh.yaml
index a2f4c7b067f..c3d20ea1567 100644
--- a/target/nextflow/transform/normalize_total/.config.vsh.yaml
+++ b/target/nextflow/transform/normalize_total/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "normalize_total"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -164,7 +164,7 @@ platforms:
   image: "python:3.10-slim-bullseye"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -247,6 +247,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/normalize_total"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/normalize_total/normalize_total"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transform/normalize_total/main.nf b/target/nextflow/transform/normalize_total/main.nf
index 8a0925a8cd1..8b1f87c52c7 100644
--- a/target/nextflow/transform/normalize_total/main.nf
+++ b/target/nextflow/transform/normalize_total/main.nf
@@ -1,4 +1,4 @@
-// normalize_total 1.0.0rc2
+// normalize_total 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "normalize_total",
     "namespace" : "transform",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -2988,7 +2988,7 @@ meta = [
       "image" : "python:3.10-slim-bullseye",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3089,9 +3089,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/normalize_total",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3530,7 +3530,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transform_normalize_total",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "midmem",
diff --git a/target/nextflow/transform/normalize_total/nextflow.config b/target/nextflow/transform/normalize_total/nextflow.config
index 470c2987357..93f7d4c1532 100644
--- a/target/nextflow/transform/normalize_total/nextflow.config
+++ b/target/nextflow/transform/normalize_total/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transform/normalize_total'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Normalize counts per cell.\n\nNormalize each cell by total counts over all genes, so that every cell has the same total count after normalization. If choosing target_sum=1e6, this is CPM normalization.\n\nIf exclude_highly_expressed=True, very highly expressed genes are excluded from the computation of the normalization factor (size factor) for each cell. This is meaningful as these can strongly influence the resulting normalized values for all other genes [Weinreb17].\n'
   author = 'Dries De Maeyer, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/transform/regress_out/.config.vsh.yaml b/target/nextflow/transform/regress_out/.config.vsh.yaml
index 82ab0332800..659e10191a5 100644
--- a/target/nextflow/transform/regress_out/.config.vsh.yaml
+++ b/target/nextflow/transform/regress_out/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "regress_out"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -118,7 +118,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -200,6 +200,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/regress_out"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/regress_out/regress_out"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transform/regress_out/main.nf b/target/nextflow/transform/regress_out/main.nf
index 691d7cc28e8..e1906c1ae59 100644
--- a/target/nextflow/transform/regress_out/main.nf
+++ b/target/nextflow/transform/regress_out/main.nf
@@ -1,4 +1,4 @@
-// regress_out 1.0.0rc2
+// regress_out 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "regress_out",
     "namespace" : "transform",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2935,7 +2935,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3035,9 +3035,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/regress_out",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3473,7 +3473,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transform_regress_out",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/transform/regress_out/nextflow.config b/target/nextflow/transform/regress_out/nextflow.config
index 5ca0a379b4a..4b15f9bdf49 100644
--- a/target/nextflow/transform/regress_out/nextflow.config
+++ b/target/nextflow/transform/regress_out/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transform/regress_out'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Regress out (mostly) unwanted sources of variation.\nUses simple linear regression. This is inspired by Seurat\'s regressOut function in R [Satija15]. \nNote that this function tends to overcorrect in certain circumstances as described in issue theislab/scanpy#526.\nSee https://github.com/theislab/scanpy/issues/526.\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/transform/scale/.config.vsh.yaml b/target/nextflow/transform/scale/.config.vsh.yaml
index c04d14f5be3..0beb9e16cf2 100644
--- a/target/nextflow/transform/scale/.config.vsh.yaml
+++ b/target/nextflow/transform/scale/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scale"
   namespace: "transform"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -125,7 +125,7 @@ platforms:
   image: "python:3.10-slim-bullseye"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -210,6 +210,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/scale"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/scale/scale"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/transform/scale/main.nf b/target/nextflow/transform/scale/main.nf
index c16725d6cd1..327a329ef2c 100644
--- a/target/nextflow/transform/scale/main.nf
+++ b/target/nextflow/transform/scale/main.nf
@@ -1,4 +1,4 @@
-// scale 1.0.0rc2
+// scale 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "scale",
     "namespace" : "transform",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2945,7 +2945,7 @@ meta = [
       "image" : "python:3.10-slim-bullseye",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3050,9 +3050,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/scale",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3485,7 +3485,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/transform_scale",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "lowmem",
diff --git a/target/nextflow/transform/scale/nextflow.config b/target/nextflow/transform/scale/nextflow.config
index f197177db4c..3c4913de9a0 100644
--- a/target/nextflow/transform/scale/nextflow.config
+++ b/target/nextflow/transform/scale/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'transform/scale'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Scale data to unit variance and zero mean.\n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/velocity/scvelo/.config.vsh.yaml b/target/nextflow/velocity/scvelo/.config.vsh.yaml
index 649345e01a1..e6cbbb84e86 100644
--- a/target/nextflow/velocity/scvelo/.config.vsh.yaml
+++ b/target/nextflow/velocity/scvelo/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scvelo"
   namespace: "velocity"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -195,7 +195,7 @@ platforms:
   image: "python:3.10-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -280,6 +280,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/velocity/scvelo"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/velocity/scvelo/scvelo"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/velocity/scvelo/main.nf b/target/nextflow/velocity/scvelo/main.nf
index 13a8ea3e369..7b356966910 100644
--- a/target/nextflow/velocity/scvelo/main.nf
+++ b/target/nextflow/velocity/scvelo/main.nf
@@ -1,4 +1,4 @@
-// scvelo 1.0.0rc2
+// scvelo 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "scvelo",
     "namespace" : "velocity",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3024,7 +3024,7 @@ meta = [
       "image" : "python:3.10-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3129,9 +3129,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/velocity/scvelo",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3620,7 +3620,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/velocity_scvelo",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/velocity/scvelo/nextflow.config b/target/nextflow/velocity/scvelo/nextflow.config
index f1393d9a7db..c3f5734aab4 100644
--- a/target/nextflow/velocity/scvelo/nextflow.config
+++ b/target/nextflow/velocity/scvelo/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'velocity/scvelo'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   author = 'Dries Schaumont'
 }
 
diff --git a/target/nextflow/velocity/velocyto/.config.vsh.yaml b/target/nextflow/velocity/velocyto/.config.vsh.yaml
index 0dcb09b83d3..aabdc85b201 100644
--- a/target/nextflow/velocity/velocyto/.config.vsh.yaml
+++ b/target/nextflow/velocity/velocyto/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "velocyto"
   namespace: "velocity"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -136,7 +136,7 @@ platforms:
   image: "python:3.9-slim"
   target_organization: "openpipelines-bio"
   target_registry: "ghcr.io"
-  target_tag: "1.0.0rc2"
+  target_tag: "1.0.0-rc2"
   namespace_separator: "_"
   resolve_volume: "Automatic"
   chown: true
@@ -228,6 +228,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/velocity/velocyto"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/velocity/velocyto/velocyto"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/velocity/velocyto/main.nf b/target/nextflow/velocity/velocyto/main.nf
index 6c8d2233e81..f11b1a9a06d 100644
--- a/target/nextflow/velocity/velocyto/main.nf
+++ b/target/nextflow/velocity/velocyto/main.nf
@@ -1,4 +1,4 @@
-// velocyto 1.0.0rc2
+// velocyto 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "velocyto",
     "namespace" : "velocity",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -2959,7 +2959,7 @@ meta = [
       "image" : "python:3.9-slim",
       "target_organization" : "openpipelines-bio",
       "target_registry" : "ghcr.io",
-      "target_tag" : "1.0.0rc2",
+      "target_tag" : "1.0.0-rc2",
       "namespace_separator" : "_",
       "resolve_volume" : "Automatic",
       "chown" : true,
@@ -3077,9 +3077,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/velocity/velocyto",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
@@ -3505,7 +3505,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/velocity_velocyto",
-    "tag" : "1.0.0rc2"
+    "tag" : "1.0.0-rc2"
   },
   "label" : [
     "highmem",
diff --git a/target/nextflow/velocity/velocyto/nextflow.config b/target/nextflow/velocity/velocyto/nextflow.config
index 196dc89e79e..c130be82afc 100644
--- a/target/nextflow/velocity/velocyto/nextflow.config
+++ b/target/nextflow/velocity/velocyto/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'velocity/velocyto'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Runs the velocity analysis on a BAM file, outputting a loom file.'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml b/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml
index 1b8606f6adf..43d122c9fdf 100644
--- a/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml
+++ b/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "gdo_singlesample"
   namespace: "workflows/gdo"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -160,14 +160,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
     configInfo:
       functionalityName: "filter_with_counts"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/filter_with_counts/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
   - name: "filter/do_filter"
@@ -177,14 +177,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml"
     configInfo:
       functionalityName: "do_filter"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/do_filter/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter"
   set_wd_to_resources_dir: false
@@ -240,6 +240,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/gdo/gdo_singlesample"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/gdo/gdo_singlesample/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/gdo/gdo_singlesample/main.nf b/target/nextflow/workflows/gdo/gdo_singlesample/main.nf
index a14e160be09..5eb187c75d5 100644
--- a/target/nextflow/workflows/gdo/gdo_singlesample/main.nf
+++ b/target/nextflow/workflows/gdo/gdo_singlesample/main.nf
@@ -1,4 +1,4 @@
-// gdo_singlesample 1.0.0rc2
+// gdo_singlesample 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "gdo_singlesample",
     "namespace" : "workflows/gdo",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2992,14 +2992,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "filter_with_counts",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/filter_with_counts/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
@@ -3013,14 +3013,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "do_filter",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/do_filter/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter"
@@ -3087,9 +3087,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/gdo/gdo_singlesample",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/gdo/gdo_singlesample/nextflow.config b/target/nextflow/workflows/gdo/gdo_singlesample/nextflow.config
index 50a0252932b..85dc834fefe 100644
--- a/target/nextflow/workflows/gdo/gdo_singlesample/nextflow.config
+++ b/target/nextflow/workflows/gdo/gdo_singlesample/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/gdo/gdo_singlesample'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Processing unimodal single-sample guide-derived oligonucleotide (GDO) data.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml b/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml
index 561adcb3f48..778fcb82ae7 100644
--- a/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml
+++ b/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bd_rhapsody"
   namespace: "workflows/ingestion"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Robrecht Cannoodt"
     roles:
@@ -366,14 +366,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/mapping/bd_rhapsody/config.vsh.yaml"
     configInfo:
       functionalityName: "bd_rhapsody"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/mapping/bd_rhapsody/config.vsh.yaml"
       functionalityNamespace: "mapping"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/mapping/bd_rhapsody/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/bd_rhapsody"
   - name: "convert/from_bdrhap_to_h5mu"
@@ -383,14 +383,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/convert/from_bdrhap_to_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "from_bdrhap_to_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/convert/from_bdrhap_to_h5mu/config.vsh.yaml"
       functionalityNamespace: "convert"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/convert/from_bdrhap_to_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bdrhap_to_h5mu"
   set_wd_to_resources_dir: false
@@ -446,6 +446,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/bd_rhapsody"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf b/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf
index 4f6ef49f70c..6d5d074b63e 100644
--- a/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf
+++ b/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf
@@ -1,4 +1,4 @@
-// bd_rhapsody 1.0.0rc2
+// bd_rhapsody 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "bd_rhapsody",
     "namespace" : "workflows/ingestion",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Robrecht Cannoodt",
@@ -3218,14 +3218,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/mapping/bd_rhapsody/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "bd_rhapsody",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/mapping/bd_rhapsody/config.vsh.yaml",
           "functionalityNamespace" : "mapping",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/mapping/bd_rhapsody/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/bd_rhapsody"
@@ -3239,14 +3239,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_bdrhap_to_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "from_bdrhap_to_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_bdrhap_to_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "convert",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/convert/from_bdrhap_to_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_bdrhap_to_h5mu"
@@ -3313,9 +3313,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/bd_rhapsody",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/ingestion/bd_rhapsody/nextflow.config b/target/nextflow/workflows/ingestion/bd_rhapsody/nextflow.config
index 357064767bf..630036023d8 100644
--- a/target/nextflow/workflows/ingestion/bd_rhapsody/nextflow.config
+++ b/target/nextflow/workflows/ingestion/bd_rhapsody/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/ingestion/bd_rhapsody'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A wrapper for the BD Rhapsody Analysis CWL v1.10.1 pipeline.\n\nThis pipeline can be used for a targeted analysis (with `--mode targeted`) or for a whole transcriptome analysis (with `--mode wta`).\n\n* If mode is `"targeted"`, then either the `--reference` or `--abseq_reference` parameters must be defined.\n* If mode is `"wta"`, then `--reference` and `--transcriptome_annotation` must be defined, `--abseq_reference` and `--supplemental_reference` is optional.\n\nThe reference_genome and transcriptome_annotation files can be generated with the make_reference pipeline.\nAlternatively, BD also provides standard references which can be downloaded from these locations:\n\n  - Human: http://bd-rhapsody-public.s3-website-us-east-1.amazonaws.com/Rhapsody-WTA/GRCh38-PhiX-gencodev29/\n  - Mouse: http://bd-rhapsody-public.s3-website-us-east-1.amazonaws.com/Rhapsody-WTA/GRCm38-PhiX-gencodevM19/\n'
   author = 'Robrecht Cannoodt'
 }
diff --git a/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml b/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml
index 8e8568f9816..703b0bf7065 100644
--- a/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml
+++ b/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_mapping"
   namespace: "workflows/ingestion"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -257,14 +257,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count/config.vsh.yaml"
     configInfo:
       functionalityName: "cellranger_count"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count/config.vsh.yaml"
       functionalityNamespace: "mapping"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/mapping/cellranger_count/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count"
   - name: "mapping/cellranger_count_split"
@@ -274,14 +274,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count_split/config.vsh.yaml"
     configInfo:
       functionalityName: "cellranger_count_split"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count_split/config.vsh.yaml"
       functionalityNamespace: "mapping"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/mapping/cellranger_count_split/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count_split"
   - name: "convert/from_10xh5_to_h5mu"
@@ -291,14 +291,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "from_10xh5_to_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml"
       functionalityNamespace: "convert"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/convert/from_10xh5_to_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xh5_to_h5mu"
   set_wd_to_resources_dir: false
@@ -354,6 +354,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_mapping"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf b/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf
index 4c20a4dfb36..d2585a7f803 100644
--- a/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf
+++ b/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf
@@ -1,4 +1,4 @@
-// cellranger_mapping 1.0.0rc2
+// cellranger_mapping 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "cellranger_mapping",
     "namespace" : "workflows/ingestion",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -3114,14 +3114,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "cellranger_count",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count/config.vsh.yaml",
           "functionalityNamespace" : "mapping",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/mapping/cellranger_count/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count"
@@ -3135,14 +3135,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count_split/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "cellranger_count_split",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_count_split/config.vsh.yaml",
           "functionalityNamespace" : "mapping",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/mapping/cellranger_count_split/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_count_split"
@@ -3156,14 +3156,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "from_10xh5_to_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "convert",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/convert/from_10xh5_to_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xh5_to_h5mu"
@@ -3230,9 +3230,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_mapping",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/ingestion/cellranger_mapping/nextflow.config b/target/nextflow/workflows/ingestion/cellranger_mapping/nextflow.config
index 0e1721e4ee9..7fa4a68f19d 100644
--- a/target/nextflow/workflows/ingestion/cellranger_mapping/nextflow.config
+++ b/target/nextflow/workflows/ingestion/cellranger_mapping/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/ingestion/cellranger_mapping'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A pipeline for running Cell Ranger mapping.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt, Dries De Maeyer'
 }
diff --git a/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml b/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml
index 2eb57237cbf..14217e3df65 100644
--- a/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml
+++ b/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_multi"
   namespace: "workflows/ingestion"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -493,14 +493,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_multi/config.vsh.yaml"
     configInfo:
       functionalityName: "cellranger_multi"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_multi/config.vsh.yaml"
       functionalityNamespace: "mapping"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/mapping/cellranger_multi/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_multi"
   - name: "convert/from_cellranger_multi_to_h5mu"
@@ -510,14 +510,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "from_cellranger_multi_to_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml"
       functionalityNamespace: "convert"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_cellranger_multi_to_h5mu"
   set_wd_to_resources_dir: false
@@ -573,6 +573,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_multi"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_multi/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/ingestion/cellranger_multi/main.nf b/target/nextflow/workflows/ingestion/cellranger_multi/main.nf
index a3f7d117cb8..31898b6470e 100644
--- a/target/nextflow/workflows/ingestion/cellranger_multi/main.nf
+++ b/target/nextflow/workflows/ingestion/cellranger_multi/main.nf
@@ -1,4 +1,4 @@
-// cellranger_multi 1.0.0rc2
+// cellranger_multi 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "cellranger_multi",
     "namespace" : "workflows/ingestion",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3338,14 +3338,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_multi/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "cellranger_multi",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/mapping/cellranger_multi/config.vsh.yaml",
           "functionalityNamespace" : "mapping",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/mapping/cellranger_multi/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/cellranger_multi"
@@ -3359,14 +3359,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "from_cellranger_multi_to_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "convert",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_cellranger_multi_to_h5mu"
@@ -3433,9 +3433,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_multi",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/ingestion/cellranger_multi/nextflow.config b/target/nextflow/workflows/ingestion/cellranger_multi/nextflow.config
index e986cbb45f7..020b4ff0f00 100644
--- a/target/nextflow/workflows/ingestion/cellranger_multi/nextflow.config
+++ b/target/nextflow/workflows/ingestion/cellranger_multi/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/ingestion/cellranger_multi'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A pipeline for running Cell Ranger multi.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml b/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml
index 508a7ff1d67..a2a71d26c85 100644
--- a/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml
+++ b/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "cellranger_postprocessing"
   namespace: "workflows/ingestion"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -161,14 +161,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/correction/cellbender_remove_background/config.vsh.yaml"
     configInfo:
       functionalityName: "cellbender_remove_background"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/correction/cellbender_remove_background/config.vsh.yaml"
       functionalityNamespace: "correction"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/correction/cellbender_remove_background/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background"
   - name: "filter/filter_with_counts"
@@ -178,14 +178,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
     configInfo:
       functionalityName: "filter_with_counts"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/filter_with_counts/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
   - name: "filter/subset_h5mu"
@@ -195,14 +195,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/subset_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "subset_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/subset_h5mu/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/subset_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/subset_h5mu"
   - name: "transfer/publish"
@@ -212,14 +212,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
     configInfo:
       functionalityName: "publish"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
       functionalityNamespace: "transfer"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transfer/publish/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
   set_wd_to_resources_dir: false
@@ -275,6 +275,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_postprocessing"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf b/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf
index ae7c05bad6a..ebfc31dbc9e 100644
--- a/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf
+++ b/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf
@@ -1,4 +1,4 @@
-// cellranger_postprocessing 1.0.0rc2
+// cellranger_postprocessing 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "cellranger_postprocessing",
     "namespace" : "workflows/ingestion",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -3008,14 +3008,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/correction/cellbender_remove_background/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "cellbender_remove_background",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/correction/cellbender_remove_background/config.vsh.yaml",
           "functionalityNamespace" : "correction",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/correction/cellbender_remove_background/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/correction/cellbender_remove_background"
@@ -3029,14 +3029,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "filter_with_counts",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/filter_with_counts/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
@@ -3050,14 +3050,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/subset_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "subset_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/subset_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/subset_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/subset_h5mu"
@@ -3071,14 +3071,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "publish",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
           "functionalityNamespace" : "transfer",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transfer/publish/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
@@ -3145,9 +3145,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/cellranger_postprocessing",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/ingestion/cellranger_postprocessing/nextflow.config b/target/nextflow/workflows/ingestion/cellranger_postprocessing/nextflow.config
index 94bedc86244..bedc539952b 100644
--- a/target/nextflow/workflows/ingestion/cellranger_postprocessing/nextflow.config
+++ b/target/nextflow/workflows/ingestion/cellranger_postprocessing/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/ingestion/cellranger_postprocessing'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Post-processing Cell Ranger datasets.'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml b/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml
index 59433c33784..ba9feb5c95d 100644
--- a/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml
+++ b/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "conversion"
   namespace: "workflows/ingestion"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -135,14 +135,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "from_10xh5_to_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml"
       functionalityNamespace: "convert"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/convert/from_10xh5_to_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xh5_to_h5mu"
   - name: "convert/from_10xmtx_to_h5mu"
@@ -152,14 +152,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xmtx_to_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "from_10xmtx_to_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xmtx_to_h5mu/config.vsh.yaml"
       functionalityNamespace: "convert"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/convert/from_10xmtx_to_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xmtx_to_h5mu"
   - name: "convert/from_h5ad_to_h5mu"
@@ -169,14 +169,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/convert/from_h5ad_to_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "from_h5ad_to_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/convert/from_h5ad_to_h5mu/config.vsh.yaml"
       functionalityNamespace: "convert"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/convert/from_h5ad_to_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5ad_to_h5mu"
   set_wd_to_resources_dir: false
@@ -232,6 +232,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/conversion"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/conversion/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/ingestion/conversion/main.nf b/target/nextflow/workflows/ingestion/conversion/main.nf
index bea431496a2..7ccecea6315 100644
--- a/target/nextflow/workflows/ingestion/conversion/main.nf
+++ b/target/nextflow/workflows/ingestion/conversion/main.nf
@@ -1,4 +1,4 @@
-// conversion 1.0.0rc2
+// conversion 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "conversion",
     "namespace" : "workflows/ingestion",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2971,14 +2971,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "from_10xh5_to_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xh5_to_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "convert",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/convert/from_10xh5_to_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xh5_to_h5mu"
@@ -2992,14 +2992,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xmtx_to_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "from_10xmtx_to_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_10xmtx_to_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "convert",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/convert/from_10xmtx_to_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_10xmtx_to_h5mu"
@@ -3013,14 +3013,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_h5ad_to_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "from_h5ad_to_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/convert/from_h5ad_to_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "convert",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/convert/from_h5ad_to_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/convert/from_h5ad_to_h5mu"
@@ -3087,9 +3087,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/conversion",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/ingestion/conversion/nextflow.config b/target/nextflow/workflows/ingestion/conversion/nextflow.config
index f3f076d4cbc..2db4636edb1 100644
--- a/target/nextflow/workflows/ingestion/conversion/nextflow.config
+++ b/target/nextflow/workflows/ingestion/conversion/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/ingestion/conversion'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A pipeline to convert different file formats to .h5mu.'
   author = 'Dries Schaumont, Dries De Maeyer'
 }
diff --git a/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml b/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml
index 2d180b7fa5f..1d46d80b4de 100644
--- a/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml
+++ b/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "demux"
   namespace: "workflows/ingestion"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Toni Verbeiren"
     roles:
@@ -217,14 +217,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/demux/cellranger_mkfastq/config.vsh.yaml"
     configInfo:
       functionalityName: "cellranger_mkfastq"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/demux/cellranger_mkfastq/config.vsh.yaml"
       functionalityNamespace: "demux"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/demux/cellranger_mkfastq/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/cellranger_mkfastq"
   - name: "demux/bcl_convert"
@@ -234,14 +234,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/demux/bcl_convert/config.vsh.yaml"
     configInfo:
       functionalityName: "bcl_convert"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/demux/bcl_convert/config.vsh.yaml"
       functionalityNamespace: "demux"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/demux/bcl_convert/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl_convert"
   - name: "demux/bcl2fastq"
@@ -251,14 +251,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/demux/bcl2fastq/config.vsh.yaml"
     configInfo:
       functionalityName: "bcl2fastq"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/demux/bcl2fastq/config.vsh.yaml"
       functionalityNamespace: "demux"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/demux/bcl2fastq/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl2fastq"
   - name: "qc/fastqc"
@@ -268,14 +268,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/qc/fastqc/config.vsh.yaml"
     configInfo:
       functionalityName: "fastqc"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/qc/fastqc/config.vsh.yaml"
       functionalityNamespace: "qc"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/qc/fastqc/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/fastqc"
   - name: "qc/multiqc"
@@ -285,14 +285,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/qc/multiqc/config.vsh.yaml"
     configInfo:
       functionalityName: "multiqc"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/qc/multiqc/config.vsh.yaml"
       functionalityNamespace: "qc"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/qc/multiqc/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/multiqc"
   set_wd_to_resources_dir: false
@@ -348,6 +348,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/demux"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/demux/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/ingestion/demux/main.nf b/target/nextflow/workflows/ingestion/demux/main.nf
index 25545f7da2c..bec2cb7a228 100644
--- a/target/nextflow/workflows/ingestion/demux/main.nf
+++ b/target/nextflow/workflows/ingestion/demux/main.nf
@@ -1,4 +1,4 @@
-// demux 1.0.0rc2
+// demux 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2781,7 +2781,7 @@ meta = [
   "functionality" : {
     "name" : "demux",
     "namespace" : "workflows/ingestion",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Toni Verbeiren",
@@ -3082,14 +3082,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/demux/cellranger_mkfastq/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "cellranger_mkfastq",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/demux/cellranger_mkfastq/config.vsh.yaml",
           "functionalityNamespace" : "demux",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/demux/cellranger_mkfastq/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/cellranger_mkfastq"
@@ -3103,14 +3103,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/demux/bcl_convert/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "bcl_convert",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/demux/bcl_convert/config.vsh.yaml",
           "functionalityNamespace" : "demux",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/demux/bcl_convert/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl_convert"
@@ -3124,14 +3124,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/demux/bcl2fastq/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "bcl2fastq",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/demux/bcl2fastq/config.vsh.yaml",
           "functionalityNamespace" : "demux",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/demux/bcl2fastq/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/demux/bcl2fastq"
@@ -3145,14 +3145,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/qc/fastqc/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "fastqc",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/qc/fastqc/config.vsh.yaml",
           "functionalityNamespace" : "qc",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/qc/fastqc/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/fastqc"
@@ -3166,14 +3166,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/qc/multiqc/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "multiqc",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/qc/multiqc/config.vsh.yaml",
           "functionalityNamespace" : "qc",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/qc/multiqc/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/multiqc"
@@ -3240,9 +3240,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/demux",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/ingestion/demux/nextflow.config b/target/nextflow/workflows/ingestion/demux/nextflow.config
index e83edf6b311..33949b5d5f5 100644
--- a/target/nextflow/workflows/ingestion/demux/nextflow.config
+++ b/target/nextflow/workflows/ingestion/demux/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/ingestion/demux'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Convert `.bcl` files to `.fastq` files using bcl2fastq, bcl-convert or Cell Ranger mkfastq.\n'
   author = 'Toni Verbeiren, Marijke Van Moerbeke, Angela Oliveira Pisco, Samuel D\'Souza, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml b/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml
index 44d1a5c8276..ec8aa244a02 100644
--- a/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml
+++ b/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "make_reference"
   namespace: "workflows/ingestion"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Angela Oliveira Pisco"
     roles:
@@ -220,14 +220,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/reference/make_reference/config.vsh.yaml"
     configInfo:
       functionalityName: "make_reference"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/reference/make_reference/config.vsh.yaml"
       functionalityNamespace: "reference"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/reference/make_reference/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/make_reference"
   - name: "reference/build_bdrhap_reference"
@@ -237,14 +237,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/reference/build_bdrhap_reference/config.vsh.yaml"
     configInfo:
       functionalityName: "build_bdrhap_reference"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/reference/build_bdrhap_reference/config.vsh.yaml"
       functionalityNamespace: "reference"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/reference/build_bdrhap_reference/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_bdrhap_reference"
   - name: "mapping/star_build_reference"
@@ -254,14 +254,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/mapping/star_build_reference/config.vsh.yml"
     configInfo:
       functionalityName: "star_build_reference"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/mapping/star_build_reference/config.vsh.yml"
       functionalityNamespace: "mapping"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/mapping/star_build_reference/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_build_reference"
   - name: "reference/build_cellranger_reference"
@@ -271,14 +271,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/reference/build_cellranger_reference/config.vsh.yaml"
     configInfo:
       functionalityName: "build_cellranger_reference"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/reference/build_cellranger_reference/config.vsh.yaml"
       functionalityNamespace: "reference"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/reference/build_cellranger_reference/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_cellranger_reference"
   set_wd_to_resources_dir: false
@@ -334,6 +334,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/make_reference"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/make_reference/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/ingestion/make_reference/main.nf b/target/nextflow/workflows/ingestion/make_reference/main.nf
index 7d6e63f6419..b2d312c3bde 100644
--- a/target/nextflow/workflows/ingestion/make_reference/main.nf
+++ b/target/nextflow/workflows/ingestion/make_reference/main.nf
@@ -1,4 +1,4 @@
-// make_reference 1.0.0rc2
+// make_reference 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "make_reference",
     "namespace" : "workflows/ingestion",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Angela Oliveira Pisco",
@@ -3072,14 +3072,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/reference/make_reference/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "make_reference",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/reference/make_reference/config.vsh.yaml",
           "functionalityNamespace" : "reference",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/reference/make_reference/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/make_reference"
@@ -3093,14 +3093,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/reference/build_bdrhap_reference/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "build_bdrhap_reference",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/reference/build_bdrhap_reference/config.vsh.yaml",
           "functionalityNamespace" : "reference",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/reference/build_bdrhap_reference/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_bdrhap_reference"
@@ -3114,14 +3114,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/mapping/star_build_reference/config.vsh.yml",
         "configInfo" : {
           "functionalityName" : "star_build_reference",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/mapping/star_build_reference/config.vsh.yml",
           "functionalityNamespace" : "mapping",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/mapping/star_build_reference/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/mapping/star_build_reference"
@@ -3135,14 +3135,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/reference/build_cellranger_reference/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "build_cellranger_reference",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/reference/build_cellranger_reference/config.vsh.yaml",
           "functionalityNamespace" : "reference",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/reference/build_cellranger_reference/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/reference/build_cellranger_reference"
@@ -3209,9 +3209,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/ingestion/make_reference",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/ingestion/make_reference/nextflow.config b/target/nextflow/workflows/ingestion/make_reference/nextflow.config
index 70150c5f485..e0e33f18f0e 100644
--- a/target/nextflow/workflows/ingestion/make_reference/nextflow.config
+++ b/target/nextflow/workflows/ingestion/make_reference/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/ingestion/make_reference'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Build a transcriptomics reference into one of many formats.\n'
   author = 'Angela Oliveira Pisco, Robrecht Cannoodt'
 }
diff --git a/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml
index a861368402e..2f8acd758ac 100644
--- a/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml
+++ b/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "bbknn_leiden"
   namespace: "workflows/integration"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Mauro Saporita"
     roles:
@@ -272,14 +272,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
     configInfo:
       functionalityName: "leiden"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
       functionalityNamespace: "cluster"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/cluster/leiden/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
   - name: "dimred/umap"
@@ -289,14 +289,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
     configInfo:
       functionalityName: "umap"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
       functionalityNamespace: "dimred"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dimred/umap/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
   - name: "neighbors/bbknn"
@@ -306,14 +306,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/neighbors/bbknn/config.vsh.yaml"
     configInfo:
       functionalityName: "bbknn"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/neighbors/bbknn/config.vsh.yaml"
       functionalityNamespace: "neighbors"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/neighbors/bbknn/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/bbknn"
   - name: "metadata/move_obsm_to_obs"
@@ -323,14 +323,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
     configInfo:
       functionalityName: "move_obsm_to_obs"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/move_obsm_to_obs/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
   set_wd_to_resources_dir: false
@@ -386,6 +386,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/bbknn_leiden"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/bbknn_leiden/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/integration/bbknn_leiden/main.nf b/target/nextflow/workflows/integration/bbknn_leiden/main.nf
index 310e568f2bf..13ca5084d6d 100644
--- a/target/nextflow/workflows/integration/bbknn_leiden/main.nf
+++ b/target/nextflow/workflows/integration/bbknn_leiden/main.nf
@@ -1,4 +1,4 @@
-// bbknn_leiden 1.0.0rc2
+// bbknn_leiden 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "bbknn_leiden",
     "namespace" : "workflows/integration",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Mauro Saporita",
@@ -3121,14 +3121,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "leiden",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
           "functionalityNamespace" : "cluster",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/cluster/leiden/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
@@ -3142,14 +3142,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "umap",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
           "functionalityNamespace" : "dimred",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dimred/umap/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
@@ -3163,14 +3163,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/bbknn/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "bbknn",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/bbknn/config.vsh.yaml",
           "functionalityNamespace" : "neighbors",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/neighbors/bbknn/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/bbknn"
@@ -3184,14 +3184,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "move_obsm_to_obs",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/move_obsm_to_obs/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
@@ -3258,9 +3258,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/bbknn_leiden",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/integration/bbknn_leiden/nextflow.config b/target/nextflow/workflows/integration/bbknn_leiden/nextflow.config
index f74c41ebd3d..203dca8e546 100644
--- a/target/nextflow/workflows/integration/bbknn_leiden/nextflow.config
+++ b/target/nextflow/workflows/integration/bbknn_leiden/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/integration/bbknn_leiden'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Run bbknn followed by leiden clustering and run umap on the result.'
   author = 'Mauro Saporita, Povilas Gibas'
 }
diff --git a/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml
index b867f7ea3c5..5ec51f47ca7 100644
--- a/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml
+++ b/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "harmony_leiden"
   namespace: "workflows/integration"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -248,14 +248,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
     configInfo:
       functionalityName: "leiden"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
       functionalityNamespace: "cluster"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/cluster/leiden/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
   - name: "integrate/harmonypy"
@@ -265,14 +265,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/integrate/harmonypy/config.vsh.yaml"
     configInfo:
       functionalityName: "harmonypy"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/integrate/harmonypy/config.vsh.yaml"
       functionalityNamespace: "integrate"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/integrate/harmonypy/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/harmonypy"
   - name: "dimred/umap"
@@ -282,14 +282,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
     configInfo:
       functionalityName: "umap"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
       functionalityNamespace: "dimred"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dimred/umap/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
   - name: "neighbors/find_neighbors"
@@ -299,14 +299,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
     configInfo:
       functionalityName: "find_neighbors"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
       functionalityNamespace: "neighbors"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/neighbors/find_neighbors/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
   - name: "metadata/move_obsm_to_obs"
@@ -316,14 +316,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
     configInfo:
       functionalityName: "move_obsm_to_obs"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/move_obsm_to_obs/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
   set_wd_to_resources_dir: false
@@ -379,6 +379,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/harmony_leiden"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/harmony_leiden/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/integration/harmony_leiden/main.nf b/target/nextflow/workflows/integration/harmony_leiden/main.nf
index b548ef05d94..48d147c7e91 100644
--- a/target/nextflow/workflows/integration/harmony_leiden/main.nf
+++ b/target/nextflow/workflows/integration/harmony_leiden/main.nf
@@ -1,4 +1,4 @@
-// harmony_leiden 1.0.0rc2
+// harmony_leiden 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "harmony_leiden",
     "namespace" : "workflows/integration",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3096,14 +3096,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "leiden",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
           "functionalityNamespace" : "cluster",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/cluster/leiden/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
@@ -3117,14 +3117,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/integrate/harmonypy/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "harmonypy",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/integrate/harmonypy/config.vsh.yaml",
           "functionalityNamespace" : "integrate",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/integrate/harmonypy/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/harmonypy"
@@ -3138,14 +3138,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "umap",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
           "functionalityNamespace" : "dimred",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dimred/umap/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
@@ -3159,14 +3159,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "find_neighbors",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
           "functionalityNamespace" : "neighbors",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/neighbors/find_neighbors/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
@@ -3180,14 +3180,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "move_obsm_to_obs",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/move_obsm_to_obs/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
@@ -3254,9 +3254,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/harmony_leiden",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/integration/harmony_leiden/nextflow.config b/target/nextflow/workflows/integration/harmony_leiden/nextflow.config
index f86d5f2ed7b..dad3aeed747 100644
--- a/target/nextflow/workflows/integration/harmony_leiden/nextflow.config
+++ b/target/nextflow/workflows/integration/harmony_leiden/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/integration/harmony_leiden'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Run harmony integration followed by neighbour calculations, leiden clustering and run umap on the result.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml
index b4dba58b529..c533bf539cb 100644
--- a/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml
+++ b/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scanorama_leiden"
   namespace: "workflows/integration"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Mauro Saporita"
     roles:
@@ -305,14 +305,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
     configInfo:
       functionalityName: "leiden"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
       functionalityNamespace: "cluster"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/cluster/leiden/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
   - name: "integrate/scanorama"
@@ -322,14 +322,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/integrate/scanorama/config.vsh.yaml"
     configInfo:
       functionalityName: "scanorama"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/integrate/scanorama/config.vsh.yaml"
       functionalityNamespace: "integrate"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/integrate/scanorama/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scanorama"
   - name: "dimred/umap"
@@ -339,14 +339,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
     configInfo:
       functionalityName: "umap"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
       functionalityNamespace: "dimred"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dimred/umap/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
   - name: "metadata/move_obsm_to_obs"
@@ -356,14 +356,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
     configInfo:
       functionalityName: "move_obsm_to_obs"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/move_obsm_to_obs/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
   - name: "neighbors/find_neighbors"
@@ -373,14 +373,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
     configInfo:
       functionalityName: "find_neighbors"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
       functionalityNamespace: "neighbors"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/neighbors/find_neighbors/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
   set_wd_to_resources_dir: false
@@ -436,6 +436,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/scanorama_leiden"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/scanorama_leiden/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/integration/scanorama_leiden/main.nf b/target/nextflow/workflows/integration/scanorama_leiden/main.nf
index cd9d229bdfc..09a72ec6424 100644
--- a/target/nextflow/workflows/integration/scanorama_leiden/main.nf
+++ b/target/nextflow/workflows/integration/scanorama_leiden/main.nf
@@ -1,4 +1,4 @@
-// scanorama_leiden 1.0.0rc2
+// scanorama_leiden 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2778,7 +2778,7 @@ meta = [
   "functionality" : {
     "name" : "scanorama_leiden",
     "namespace" : "workflows/integration",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Mauro Saporita",
@@ -3168,14 +3168,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "leiden",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
           "functionalityNamespace" : "cluster",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/cluster/leiden/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
@@ -3189,14 +3189,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/integrate/scanorama/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "scanorama",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/integrate/scanorama/config.vsh.yaml",
           "functionalityNamespace" : "integrate",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/integrate/scanorama/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scanorama"
@@ -3210,14 +3210,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "umap",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
           "functionalityNamespace" : "dimred",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dimred/umap/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
@@ -3231,14 +3231,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "move_obsm_to_obs",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/move_obsm_to_obs/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
@@ -3252,14 +3252,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "find_neighbors",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
           "functionalityNamespace" : "neighbors",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/neighbors/find_neighbors/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
@@ -3326,9 +3326,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/scanorama_leiden",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/integration/scanorama_leiden/nextflow.config b/target/nextflow/workflows/integration/scanorama_leiden/nextflow.config
index e94ce847456..3cd33fe2c1d 100644
--- a/target/nextflow/workflows/integration/scanorama_leiden/nextflow.config
+++ b/target/nextflow/workflows/integration/scanorama_leiden/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/integration/scanorama_leiden'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Run scanorama integration followed by neighbour calculations, leiden clustering and run umap on the result.'
   author = 'Mauro Saporita, Povilas Gibas'
 }
diff --git a/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml
index 45b474c99af..0ce2cdadd83 100644
--- a/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml
+++ b/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "scvi_leiden"
   namespace: "workflows/integration"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -338,14 +338,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
     configInfo:
       functionalityName: "leiden"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
       functionalityNamespace: "cluster"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/cluster/leiden/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
   - name: "metadata/move_obsm_to_obs"
@@ -355,14 +355,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
     configInfo:
       functionalityName: "move_obsm_to_obs"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/move_obsm_to_obs/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
   - name: "integrate/scvi"
@@ -372,14 +372,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/integrate/scvi/config.vsh.yaml"
     configInfo:
       functionalityName: "scvi"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/integrate/scvi/config.vsh.yaml"
       functionalityNamespace: "integrate"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/integrate/scvi/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scvi"
   - name: "dimred/umap"
@@ -389,14 +389,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
     configInfo:
       functionalityName: "umap"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
       functionalityNamespace: "dimred"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dimred/umap/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
   - name: "neighbors/find_neighbors"
@@ -406,14 +406,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
     configInfo:
       functionalityName: "find_neighbors"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
       functionalityNamespace: "neighbors"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/neighbors/find_neighbors/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
   set_wd_to_resources_dir: false
@@ -469,6 +469,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/scvi_leiden"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/scvi_leiden/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/integration/scvi_leiden/main.nf b/target/nextflow/workflows/integration/scvi_leiden/main.nf
index b14f6749c24..6381d3a2250 100644
--- a/target/nextflow/workflows/integration/scvi_leiden/main.nf
+++ b/target/nextflow/workflows/integration/scvi_leiden/main.nf
@@ -1,4 +1,4 @@
-// scvi_leiden 1.0.0rc2
+// scvi_leiden 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "scvi_leiden",
     "namespace" : "workflows/integration",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3191,14 +3191,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "leiden",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
           "functionalityNamespace" : "cluster",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/cluster/leiden/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
@@ -3212,14 +3212,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "move_obsm_to_obs",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/move_obsm_to_obs/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
@@ -3233,14 +3233,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/integrate/scvi/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "scvi",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/integrate/scvi/config.vsh.yaml",
           "functionalityNamespace" : "integrate",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/integrate/scvi/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/scvi"
@@ -3254,14 +3254,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "umap",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
           "functionalityNamespace" : "dimred",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dimred/umap/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
@@ -3275,14 +3275,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "find_neighbors",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
           "functionalityNamespace" : "neighbors",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/neighbors/find_neighbors/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
@@ -3349,9 +3349,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/scvi_leiden",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/integration/scvi_leiden/nextflow.config b/target/nextflow/workflows/integration/scvi_leiden/nextflow.config
index ade0f34f6bd..f94a586d42b 100644
--- a/target/nextflow/workflows/integration/scvi_leiden/nextflow.config
+++ b/target/nextflow/workflows/integration/scvi_leiden/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/integration/scvi_leiden'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Run scvi integration followed by neighbour calculations, leiden clustering and run umap on the result.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml
index a537262f25a..4331b78a72a 100644
--- a/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml
+++ b/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "totalvi_leiden"
   namespace: "workflows/integration"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -422,14 +422,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
     configInfo:
       functionalityName: "leiden"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml"
       functionalityNamespace: "cluster"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/cluster/leiden/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
   - name: "metadata/move_obsm_to_obs"
@@ -439,14 +439,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
     configInfo:
       functionalityName: "move_obsm_to_obs"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/move_obsm_to_obs/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
   - name: "integrate/totalvi"
@@ -456,14 +456,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/integrate/totalvi/config.vsh.yaml"
     configInfo:
       functionalityName: "totalvi"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/integrate/totalvi/config.vsh.yaml"
       functionalityNamespace: "integrate"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/integrate/totalvi/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/totalvi"
   - name: "dimred/umap"
@@ -473,14 +473,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
     configInfo:
       functionalityName: "umap"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
       functionalityNamespace: "dimred"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dimred/umap/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
   - name: "neighbors/find_neighbors"
@@ -490,14 +490,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
     configInfo:
       functionalityName: "find_neighbors"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
       functionalityNamespace: "neighbors"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/neighbors/find_neighbors/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
   - name: "transfer/publish"
@@ -507,14 +507,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
     configInfo:
       functionalityName: "publish"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
       functionalityNamespace: "transfer"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transfer/publish/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
   set_wd_to_resources_dir: false
@@ -570,6 +570,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/totalvi_leiden"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/totalvi_leiden/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/integration/totalvi_leiden/main.nf b/target/nextflow/workflows/integration/totalvi_leiden/main.nf
index a646ab8abaf..a25b609ac22 100644
--- a/target/nextflow/workflows/integration/totalvi_leiden/main.nf
+++ b/target/nextflow/workflows/integration/totalvi_leiden/main.nf
@@ -1,4 +1,4 @@
-// totalvi_leiden 1.0.0rc2
+// totalvi_leiden 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "totalvi_leiden",
     "namespace" : "workflows/integration",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3299,14 +3299,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "leiden",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/cluster/leiden/config.vsh.yaml",
           "functionalityNamespace" : "cluster",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/cluster/leiden/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/cluster/leiden"
@@ -3320,14 +3320,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "move_obsm_to_obs",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/move_obsm_to_obs/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/move_obsm_to_obs/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/move_obsm_to_obs"
@@ -3341,14 +3341,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/integrate/totalvi/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "totalvi",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/integrate/totalvi/config.vsh.yaml",
           "functionalityNamespace" : "integrate",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/integrate/totalvi/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/integrate/totalvi"
@@ -3362,14 +3362,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "umap",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
           "functionalityNamespace" : "dimred",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dimred/umap/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
@@ -3383,14 +3383,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "find_neighbors",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
           "functionalityNamespace" : "neighbors",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/neighbors/find_neighbors/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
@@ -3404,14 +3404,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "publish",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
           "functionalityNamespace" : "transfer",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transfer/publish/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
@@ -3478,9 +3478,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/integration/totalvi_leiden",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/integration/totalvi_leiden/nextflow.config b/target/nextflow/workflows/integration/totalvi_leiden/nextflow.config
index a2eca8ed602..c3eea6cd59a 100644
--- a/target/nextflow/workflows/integration/totalvi_leiden/nextflow.config
+++ b/target/nextflow/workflows/integration/totalvi_leiden/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/integration/totalvi_leiden'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Run totalVI integration followed by neighbour calculations, leiden clustering and run umap on the result.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml b/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml
index bdfd36b513b..984669bee56 100644
--- a/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml
+++ b/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "dimensionality_reduction"
   namespace: "workflows/multiomics"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -196,14 +196,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dimred/pca/config.vsh.yaml"
     configInfo:
       functionalityName: "pca"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dimred/pca/config.vsh.yaml"
       functionalityNamespace: "dimred"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dimred/pca/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/pca"
   - name: "neighbors/find_neighbors"
@@ -213,14 +213,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
     configInfo:
       functionalityName: "find_neighbors"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml"
       functionalityNamespace: "neighbors"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/neighbors/find_neighbors/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
   - name: "dimred/umap"
@@ -230,14 +230,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
     configInfo:
       functionalityName: "umap"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml"
       functionalityNamespace: "dimred"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dimred/umap/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
   set_wd_to_resources_dir: false
@@ -293,6 +293,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/dimensionality_reduction"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf b/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf
index 5776826e3dd..2c795fa47d7 100644
--- a/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf
+++ b/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf
@@ -1,4 +1,4 @@
-// dimensionality_reduction 1.0.0rc2
+// dimensionality_reduction 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "dimensionality_reduction",
     "namespace" : "workflows/multiomics",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3035,14 +3035,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dimred/pca/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "pca",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dimred/pca/config.vsh.yaml",
           "functionalityNamespace" : "dimred",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dimred/pca/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/pca"
@@ -3056,14 +3056,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "find_neighbors",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/neighbors/find_neighbors/config.vsh.yaml",
           "functionalityNamespace" : "neighbors",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/neighbors/find_neighbors/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/neighbors/find_neighbors"
@@ -3077,14 +3077,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "umap",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dimred/umap/config.vsh.yaml",
           "functionalityNamespace" : "dimred",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dimred/umap/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dimred/umap"
@@ -3151,9 +3151,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/dimensionality_reduction",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/multiomics/dimensionality_reduction/nextflow.config b/target/nextflow/workflows/multiomics/dimensionality_reduction/nextflow.config
index 3b5b2606f3b..caa07bf1d1e 100644
--- a/target/nextflow/workflows/multiomics/dimensionality_reduction/nextflow.config
+++ b/target/nextflow/workflows/multiomics/dimensionality_reduction/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/multiomics/dimensionality_reduction'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Run calculations that output information required for most integration methods: PCA, nearest neighbour and UMAP.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml b/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml
index a1c6bf134cc..cedba1226b2 100644
--- a/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml
+++ b/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "process_batches"
   namespace: "workflows/multiomics"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -200,14 +200,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml"
     configInfo:
       functionalityName: "merge"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml"
       functionalityNamespace: "dataflow"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dataflow/merge/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/merge"
   - name: "workflows/multiomics/split_modalities"
@@ -218,14 +218,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml"
     configInfo:
       functionalityName: "split_modalities"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml"
       functionalityNamespace: "workflows/multiomics"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/multiomics/split_modalities/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/split_modalities"
   - name: "workflows/prot/prot_multisample"
@@ -235,14 +235,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_multisample/config.vsh.yaml"
     configInfo:
       functionalityName: "prot_multisample"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_multisample/config.vsh.yaml"
       functionalityNamespace: "workflows/prot"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/prot/prot_multisample/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_multisample"
   - name: "workflows/rna/rna_multisample"
@@ -252,14 +252,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_multisample/config.vsh.yaml"
     configInfo:
       functionalityName: "rna_multisample"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_multisample/config.vsh.yaml"
       functionalityNamespace: "workflows/rna"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/rna/rna_multisample/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_multisample"
   - name: "workflows/multiomics/dimensionality_reduction"
@@ -270,14 +270,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml"
     configInfo:
       functionalityName: "dimensionality_reduction"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml"
       functionalityNamespace: "workflows/multiomics"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/multiomics/dimensionality_reduction/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/dimensionality_reduction"
   - name: "workflows/multiomics/dimensionality_reduction"
@@ -288,14 +288,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml"
     configInfo:
       functionalityName: "dimensionality_reduction"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml"
       functionalityNamespace: "workflows/multiomics"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/multiomics/dimensionality_reduction/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/dimensionality_reduction"
   - name: "transfer/publish"
@@ -305,14 +305,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
     configInfo:
       functionalityName: "publish"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
       functionalityNamespace: "transfer"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transfer/publish/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
   set_wd_to_resources_dir: false
@@ -368,6 +368,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_batches"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_batches/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/multiomics/process_batches/main.nf b/target/nextflow/workflows/multiomics/process_batches/main.nf
index 5f9f67831e3..120eda8aaeb 100644
--- a/target/nextflow/workflows/multiomics/process_batches/main.nf
+++ b/target/nextflow/workflows/multiomics/process_batches/main.nf
@@ -1,4 +1,4 @@
-// process_batches 1.0.0rc2
+// process_batches 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "process_batches",
     "namespace" : "workflows/multiomics",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3034,14 +3034,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml",
         "configInfo" : {
           "functionalityName" : "merge",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml",
           "functionalityNamespace" : "dataflow",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dataflow/merge/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/merge"
@@ -3056,14 +3056,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "split_modalities",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml",
           "functionalityNamespace" : "workflows/multiomics",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/multiomics/split_modalities/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/split_modalities"
@@ -3077,14 +3077,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_multisample/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "prot_multisample",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_multisample/config.vsh.yaml",
           "functionalityNamespace" : "workflows/prot",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/prot/prot_multisample/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_multisample"
@@ -3098,14 +3098,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_multisample/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "rna_multisample",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_multisample/config.vsh.yaml",
           "functionalityNamespace" : "workflows/rna",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/rna/rna_multisample/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_multisample"
@@ -3120,14 +3120,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "dimensionality_reduction",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml",
           "functionalityNamespace" : "workflows/multiomics",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/multiomics/dimensionality_reduction/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/dimensionality_reduction"
@@ -3142,14 +3142,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "dimensionality_reduction",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml",
           "functionalityNamespace" : "workflows/multiomics",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/multiomics/dimensionality_reduction/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/dimensionality_reduction"
@@ -3163,14 +3163,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "publish",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
           "functionalityNamespace" : "transfer",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transfer/publish/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
@@ -3237,9 +3237,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_batches",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/multiomics/process_batches/nextflow.config b/target/nextflow/workflows/multiomics/process_batches/nextflow.config
index f10339c6996..cc29559b401 100644
--- a/target/nextflow/workflows/multiomics/process_batches/nextflow.config
+++ b/target/nextflow/workflows/multiomics/process_batches/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/multiomics/process_batches'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'This workflow serves as an entrypoint into the \'full_pipeline\' in order to\nre-run the multisample processing and the integration setup. An input .h5mu file will \nfirst be split in order to run the multisample processing per modality. Next, the modalities\nare merged again and the integration setup pipeline is executed. Please note that this workflow\nassumes that samples from multiple pipelines are already concatenated. \n'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml b/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml
index 2a57532dc45..de82ad709a5 100644
--- a/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml
+++ b/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "process_samples"
   namespace: "workflows/multiomics"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -499,14 +499,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml"
     configInfo:
       functionalityName: "add_id"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/add_id/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/add_id"
   - name: "workflows/multiomics/split_modalities"
@@ -517,14 +517,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml"
     configInfo:
       functionalityName: "split_modalities"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml"
       functionalityNamespace: "workflows/multiomics"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/multiomics/split_modalities/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/split_modalities"
   - name: "dataflow/merge"
@@ -534,14 +534,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml"
     configInfo:
       functionalityName: "merge"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml"
       functionalityNamespace: "dataflow"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dataflow/merge/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/merge"
   - name: "dataflow/concatenate_h5mu"
@@ -551,14 +551,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dataflow/concatenate_h5mu/config.vsh.yaml"
     configInfo:
       functionalityName: "concatenate_h5mu"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dataflow/concatenate_h5mu/config.vsh.yaml"
       functionalityNamespace: "dataflow"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dataflow/concatenate_h5mu/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concatenate_h5mu"
   - name: "transfer/publish"
@@ -568,14 +568,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
     configInfo:
       functionalityName: "publish"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
       functionalityNamespace: "transfer"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transfer/publish/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
   - name: "workflows/rna/rna_singlesample"
@@ -585,14 +585,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_singlesample/config.vsh.yaml"
     configInfo:
       functionalityName: "rna_singlesample"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_singlesample/config.vsh.yaml"
       functionalityNamespace: "workflows/rna"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/rna/rna_singlesample/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_singlesample"
   - name: "workflows/prot/prot_singlesample"
@@ -602,14 +602,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_singlesample/config.vsh.yaml"
     configInfo:
       functionalityName: "prot_singlesample"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_singlesample/config.vsh.yaml"
       functionalityNamespace: "workflows/prot"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/prot/prot_singlesample/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_singlesample"
   - name: "workflows/gdo/gdo_singlesample"
@@ -619,14 +619,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/gdo/gdo_singlesample/config.vsh.yaml"
     configInfo:
       functionalityName: "gdo_singlesample"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/gdo/gdo_singlesample/config.vsh.yaml"
       functionalityNamespace: "workflows/gdo"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/gdo/gdo_singlesample/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/gdo/gdo_singlesample"
   - name: "workflows/multiomics/process_batches"
@@ -636,14 +636,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/process_batches/config.vsh.yaml"
     configInfo:
       functionalityName: "process_batches"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/process_batches/config.vsh.yaml"
       functionalityNamespace: "workflows/multiomics"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/multiomics/process_batches/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_batches"
   set_wd_to_resources_dir: false
@@ -699,6 +699,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_samples"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_samples/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/multiomics/process_samples/main.nf b/target/nextflow/workflows/multiomics/process_samples/main.nf
index fd09a8879b5..7070d2ad7b9 100644
--- a/target/nextflow/workflows/multiomics/process_samples/main.nf
+++ b/target/nextflow/workflows/multiomics/process_samples/main.nf
@@ -1,4 +1,4 @@
-// process_samples 1.0.0rc2
+// process_samples 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "process_samples",
     "namespace" : "workflows/multiomics",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3399,14 +3399,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "add_id",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/add_id/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/add_id"
@@ -3421,14 +3421,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "split_modalities",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/split_modalities/config.vsh.yaml",
           "functionalityNamespace" : "workflows/multiomics",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/multiomics/split_modalities/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/split_modalities"
@@ -3442,14 +3442,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml",
         "configInfo" : {
           "functionalityName" : "merge",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/merge/config.vsh.yml",
           "functionalityNamespace" : "dataflow",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dataflow/merge/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/merge"
@@ -3463,14 +3463,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/concatenate_h5mu/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "concatenate_h5mu",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/concatenate_h5mu/config.vsh.yaml",
           "functionalityNamespace" : "dataflow",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dataflow/concatenate_h5mu/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/concatenate_h5mu"
@@ -3484,14 +3484,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "publish",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
           "functionalityNamespace" : "transfer",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transfer/publish/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
@@ -3505,14 +3505,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_singlesample/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "rna_singlesample",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/rna/rna_singlesample/config.vsh.yaml",
           "functionalityNamespace" : "workflows/rna",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/rna/rna_singlesample/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_singlesample"
@@ -3526,14 +3526,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_singlesample/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "prot_singlesample",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/prot/prot_singlesample/config.vsh.yaml",
           "functionalityNamespace" : "workflows/prot",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/prot/prot_singlesample/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_singlesample"
@@ -3547,14 +3547,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/gdo/gdo_singlesample/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "gdo_singlesample",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/gdo/gdo_singlesample/config.vsh.yaml",
           "functionalityNamespace" : "workflows/gdo",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/gdo/gdo_singlesample/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/gdo/gdo_singlesample"
@@ -3568,14 +3568,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/process_batches/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "process_batches",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/multiomics/process_batches/config.vsh.yaml",
           "functionalityNamespace" : "workflows/multiomics",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/multiomics/process_batches/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_batches"
@@ -3642,9 +3642,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/process_samples",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/multiomics/process_samples/nextflow.config b/target/nextflow/workflows/multiomics/process_samples/nextflow.config
index 9a43da635ca..80456c5c615 100644
--- a/target/nextflow/workflows/multiomics/process_samples/nextflow.config
+++ b/target/nextflow/workflows/multiomics/process_samples/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/multiomics/process_samples'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A pipeline to analyse multiple multiomics samples.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml b/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml
index 3cb281d8ff8..6b224c398a1 100644
--- a/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml
+++ b/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "split_modalities"
   namespace: "workflows/multiomics"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -108,14 +108,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/dataflow/split_modalities/config.vsh.yaml"
     configInfo:
       functionalityName: "split_modalities"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/dataflow/split_modalities/config.vsh.yaml"
       functionalityNamespace: "dataflow"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/dataflow/split_modalities/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/split_modalities"
   set_wd_to_resources_dir: false
@@ -171,6 +171,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/split_modalities"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/split_modalities/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/multiomics/split_modalities/main.nf b/target/nextflow/workflows/multiomics/split_modalities/main.nf
index aafde3889bf..fb508f220ac 100644
--- a/target/nextflow/workflows/multiomics/split_modalities/main.nf
+++ b/target/nextflow/workflows/multiomics/split_modalities/main.nf
@@ -1,4 +1,4 @@
-// split_modalities 1.0.0rc2
+// split_modalities 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "split_modalities",
     "namespace" : "workflows/multiomics",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -2923,14 +2923,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/split_modalities/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "split_modalities",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/dataflow/split_modalities/config.vsh.yaml",
           "functionalityNamespace" : "dataflow",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/dataflow/split_modalities/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/dataflow/split_modalities"
@@ -2997,9 +2997,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/multiomics/split_modalities",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/multiomics/split_modalities/nextflow.config b/target/nextflow/workflows/multiomics/split_modalities/nextflow.config
index 2bc7d7bef4b..617804c3a2b 100644
--- a/target/nextflow/workflows/multiomics/split_modalities/nextflow.config
+++ b/target/nextflow/workflows/multiomics/split_modalities/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/multiomics/split_modalities'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A pipeline to split a multimodal mudata files into several unimodal mudata files.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml b/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml
index d4e8c8eb5fd..3836c314ab8 100644
--- a/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml
+++ b/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "prot_multisample"
   namespace: "workflows/prot"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -211,14 +211,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transform/clr/config.vsh.yaml"
     configInfo:
       functionalityName: "clr"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transform/clr/config.vsh.yaml"
       functionalityNamespace: "transform"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transform/clr/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/clr"
   - name: "workflows/qc/qc"
@@ -229,14 +229,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml"
     configInfo:
       functionalityName: "qc"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml"
       functionalityNamespace: "workflows/qc"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/qc/qc/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc"
   set_wd_to_resources_dir: false
@@ -292,6 +292,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_multisample"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_multisample/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/prot/prot_multisample/main.nf b/target/nextflow/workflows/prot/prot_multisample/main.nf
index 2495654fef8..62a1ad6f296 100644
--- a/target/nextflow/workflows/prot/prot_multisample/main.nf
+++ b/target/nextflow/workflows/prot/prot_multisample/main.nf
@@ -1,4 +1,4 @@
-// prot_multisample 1.0.0rc2
+// prot_multisample 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "prot_multisample",
     "namespace" : "workflows/prot",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3037,14 +3037,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transform/clr/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "clr",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transform/clr/config.vsh.yaml",
           "functionalityNamespace" : "transform",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transform/clr/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/clr"
@@ -3059,14 +3059,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "qc",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml",
           "functionalityNamespace" : "workflows/qc",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/qc/qc/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc"
@@ -3133,9 +3133,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_multisample",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/prot/prot_multisample/nextflow.config b/target/nextflow/workflows/prot/prot_multisample/nextflow.config
index 0b9602c7bba..b56dbebbf23 100644
--- a/target/nextflow/workflows/prot/prot_multisample/nextflow.config
+++ b/target/nextflow/workflows/prot/prot_multisample/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/prot/prot_multisample'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Processing unimodal multi-sample ADT data.'
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml b/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml
index 64095026911..4c883abad9d 100644
--- a/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml
+++ b/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "prot_singlesample"
   namespace: "workflows/prot"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -191,14 +191,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
     configInfo:
       functionalityName: "filter_with_counts"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/filter_with_counts/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
   - name: "filter/do_filter"
@@ -208,14 +208,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml"
     configInfo:
       functionalityName: "do_filter"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/do_filter/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter"
   set_wd_to_resources_dir: false
@@ -271,6 +271,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_singlesample"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_singlesample/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/prot/prot_singlesample/main.nf b/target/nextflow/workflows/prot/prot_singlesample/main.nf
index accdfdf5af8..9420e481da4 100644
--- a/target/nextflow/workflows/prot/prot_singlesample/main.nf
+++ b/target/nextflow/workflows/prot/prot_singlesample/main.nf
@@ -1,4 +1,4 @@
-// prot_singlesample 1.0.0rc2
+// prot_singlesample 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "prot_singlesample",
     "namespace" : "workflows/prot",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3046,14 +3046,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "filter_with_counts",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/filter_with_counts/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
@@ -3067,14 +3067,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "do_filter",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/do_filter/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter"
@@ -3141,9 +3141,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/prot/prot_singlesample",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/prot/prot_singlesample/nextflow.config b/target/nextflow/workflows/prot/prot_singlesample/nextflow.config
index cb10749fb2d..bd63f9ac666 100644
--- a/target/nextflow/workflows/prot/prot_singlesample/nextflow.config
+++ b/target/nextflow/workflows/prot/prot_singlesample/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/prot/prot_singlesample'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Processing unimodal single-sample CITE-seq data.'
   author = 'Dries De Maeyer, Robrecht Cannoodt, Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/qc/qc/.config.vsh.yaml b/target/nextflow/workflows/qc/qc/.config.vsh.yaml
index 3352114ce69..0d7971a6032 100644
--- a/target/nextflow/workflows/qc/qc/.config.vsh.yaml
+++ b/target/nextflow/workflows/qc/qc/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "qc"
   namespace: "workflows/qc"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries Schaumont"
     roles:
@@ -276,14 +276,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
     configInfo:
       functionalityName: "publish"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml"
       functionalityNamespace: "transfer"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transfer/publish/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
   - name: "metadata/grep_annotation_column"
@@ -293,14 +293,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/grep_annotation_column/config.vsh.yaml"
     configInfo:
       functionalityName: "grep_annotation_column"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/grep_annotation_column/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/grep_annotation_column/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/grep_annotation_column"
   - name: "qc/calculate_qc_metrics"
@@ -310,14 +310,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/qc/calculate_qc_metrics/config.vsh.yaml"
     configInfo:
       functionalityName: "calculate_qc_metrics"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/qc/calculate_qc_metrics/config.vsh.yaml"
       functionalityNamespace: "qc"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/qc/calculate_qc_metrics/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/calculate_qc_metrics"
   set_wd_to_resources_dir: false
@@ -373,6 +373,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/qc/qc/main.nf b/target/nextflow/workflows/qc/qc/main.nf
index f58f8dbc4d5..a521ba7f029 100644
--- a/target/nextflow/workflows/qc/qc/main.nf
+++ b/target/nextflow/workflows/qc/qc/main.nf
@@ -1,4 +1,4 @@
-// qc 1.0.0rc2
+// qc 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2777,7 +2777,7 @@ meta = [
   "functionality" : {
     "name" : "qc",
     "namespace" : "workflows/qc",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries Schaumont",
@@ -3110,14 +3110,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "publish",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transfer/publish/config.vsh.yaml",
           "functionalityNamespace" : "transfer",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transfer/publish/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transfer/publish"
@@ -3131,14 +3131,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/grep_annotation_column/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "grep_annotation_column",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/grep_annotation_column/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/grep_annotation_column/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/grep_annotation_column"
@@ -3152,14 +3152,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/qc/calculate_qc_metrics/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "calculate_qc_metrics",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/qc/calculate_qc_metrics/config.vsh.yaml",
           "functionalityNamespace" : "qc",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/qc/calculate_qc_metrics/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/qc/calculate_qc_metrics"
@@ -3226,9 +3226,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/qc/qc/nextflow.config b/target/nextflow/workflows/qc/qc/nextflow.config
index e556bf562eb..4bfea18da14 100644
--- a/target/nextflow/workflows/qc/qc/nextflow.config
+++ b/target/nextflow/workflows/qc/qc/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/qc/qc'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'A pipeline to add basic qc statistics to a MuData '
   author = 'Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml b/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml
index bd44c2609a9..8eb809fd91d 100644
--- a/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml
+++ b/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "rna_multisample"
   namespace: "workflows/rna"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -321,14 +321,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transform/normalize_total/config.vsh.yaml"
     configInfo:
       functionalityName: "normalize_total"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transform/normalize_total/config.vsh.yaml"
       functionalityNamespace: "transform"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transform/normalize_total/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/normalize_total"
   - name: "transform/log1p"
@@ -338,14 +338,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transform/log1p/config.vsh.yaml"
     configInfo:
       functionalityName: "log1p"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transform/log1p/config.vsh.yaml"
       functionalityNamespace: "transform"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transform/log1p/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/log1p"
   - name: "feature_annotation/highly_variable_features_scanpy"
@@ -355,14 +355,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/feature_annotation/highly_variable_features_scanpy/config.vsh.yaml"
     configInfo:
       functionalityName: "highly_variable_features_scanpy"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/feature_annotation/highly_variable_features_scanpy/config.vsh.yaml"
       functionalityNamespace: "feature_annotation"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/feature_annotation/highly_variable_features_scanpy"
   - name: "workflows/qc/qc"
@@ -373,14 +373,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml"
     configInfo:
       functionalityName: "qc"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml"
       functionalityNamespace: "workflows/qc"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/qc/qc/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc"
   - name: "transform/delete_layer"
@@ -390,14 +390,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/transform/delete_layer/config.vsh.yaml"
     configInfo:
       functionalityName: "delete_layer"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/transform/delete_layer/config.vsh.yaml"
       functionalityNamespace: "transform"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/transform/delete_layer/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/delete_layer"
   - name: "metadata/add_id"
@@ -407,14 +407,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml"
     configInfo:
       functionalityName: "add_id"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml"
       functionalityNamespace: "metadata"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/metadata/add_id/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/add_id"
   set_wd_to_resources_dir: false
@@ -470,6 +470,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_multisample"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_multisample/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/rna/rna_multisample/main.nf b/target/nextflow/workflows/rna/rna_multisample/main.nf
index 4c5ba03a230..bd43635cb43 100644
--- a/target/nextflow/workflows/rna/rna_multisample/main.nf
+++ b/target/nextflow/workflows/rna/rna_multisample/main.nf
@@ -1,4 +1,4 @@
-// rna_multisample 1.0.0rc2
+// rna_multisample 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "rna_multisample",
     "namespace" : "workflows/rna",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3175,14 +3175,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transform/normalize_total/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "normalize_total",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transform/normalize_total/config.vsh.yaml",
           "functionalityNamespace" : "transform",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transform/normalize_total/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/normalize_total"
@@ -3196,14 +3196,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transform/log1p/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "log1p",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transform/log1p/config.vsh.yaml",
           "functionalityNamespace" : "transform",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transform/log1p/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/log1p"
@@ -3217,14 +3217,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/feature_annotation/highly_variable_features_scanpy/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "highly_variable_features_scanpy",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/feature_annotation/highly_variable_features_scanpy/config.vsh.yaml",
           "functionalityNamespace" : "feature_annotation",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/feature_annotation/highly_variable_features_scanpy"
@@ -3239,14 +3239,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "qc",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml",
           "functionalityNamespace" : "workflows/qc",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/qc/qc/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc"
@@ -3260,14 +3260,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/transform/delete_layer/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "delete_layer",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/transform/delete_layer/config.vsh.yaml",
           "functionalityNamespace" : "transform",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/transform/delete_layer/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/transform/delete_layer"
@@ -3281,14 +3281,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "add_id",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/metadata/add_id/config.vsh.yaml",
           "functionalityNamespace" : "metadata",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/metadata/add_id/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/metadata/add_id"
@@ -3355,9 +3355,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_multisample",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/rna/rna_multisample/nextflow.config b/target/nextflow/workflows/rna/rna_multisample/nextflow.config
index 31d39b970a3..12ef2a7f3d7 100644
--- a/target/nextflow/workflows/rna/rna_multisample/nextflow.config
+++ b/target/nextflow/workflows/rna/rna_multisample/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/rna/rna_multisample'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Processing unimodal multi-sample RNA transcriptomics data.'
   author = 'Dries De Maeyer, Robrecht Cannoodt, Dries Schaumont'
 }
diff --git a/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml b/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml
index 04292cb6c87..1eecf8b4158 100644
--- a/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml
+++ b/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml
@@ -1,7 +1,7 @@
 functionality:
   name: "rna_singlesample"
   namespace: "workflows/rna"
-  version: "1.0.0rc2"
+  version: "1.0.0-rc2"
   authors:
   - name: "Dries De Maeyer"
     roles:
@@ -266,14 +266,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
     configInfo:
       functionalityName: "filter_with_counts"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/filter_with_counts/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
   - name: "filter/filter_with_scrublet"
@@ -283,14 +283,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_scrublet/config.vsh.yaml"
     configInfo:
       functionalityName: "filter_with_scrublet"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_scrublet/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/filter_with_scrublet/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_scrublet"
   - name: "filter/do_filter"
@@ -300,14 +300,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml"
     configInfo:
       functionalityName: "do_filter"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/do_filter/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter"
   - name: "filter/delimit_fraction"
@@ -317,14 +317,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/filter/delimit_fraction/config.vsh.yaml"
     configInfo:
       functionalityName: "delimit_fraction"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/filter/delimit_fraction/config.vsh.yaml"
       functionalityNamespace: "filter"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/filter/delimit_fraction/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/delimit_fraction"
   - name: "workflows/qc/qc"
@@ -334,14 +334,14 @@ functionality:
     foundConfigPath: "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml"
     configInfo:
       functionalityName: "qc"
-      git_tag: "1.0.0rc1"
+      git_tag: "1.0.0rc1-1-g4c219ba08e"
       git_remote: "https://github.com/openpipelines-bio/openpipeline"
       viash_version: "0.8.5"
       config: "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml"
       functionalityNamespace: "workflows/qc"
       output: ""
       platform: ""
-      git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+      git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
       executable: "/nextflow/workflows/qc/qc/main.nf"
     writtenPath: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc"
   set_wd_to_resources_dir: false
@@ -397,6 +397,6 @@ info:
   output: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_singlesample"
   executable: "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_singlesample/main.nf"
   viash_version: "0.8.5"
-  git_commit: "ac02e9747ee677373b09256e2f648537b9d80692"
+  git_commit: "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "1.0.0rc1"
+  git_tag: "1.0.0rc1-1-g4c219ba08e"
diff --git a/target/nextflow/workflows/rna/rna_singlesample/main.nf b/target/nextflow/workflows/rna/rna_singlesample/main.nf
index 9dccf20bf6e..6cb69c28da3 100644
--- a/target/nextflow/workflows/rna/rna_singlesample/main.nf
+++ b/target/nextflow/workflows/rna/rna_singlesample/main.nf
@@ -1,4 +1,4 @@
-// rna_singlesample 1.0.0rc2
+// rna_singlesample 1.0.0-rc2
 // 
 // This wrapper script is auto-generated by viash 0.8.5 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2779,7 +2779,7 @@ meta = [
   "functionality" : {
     "name" : "rna_singlesample",
     "namespace" : "workflows/rna",
-    "version" : "1.0.0rc2",
+    "version" : "1.0.0-rc2",
     "authors" : [
       {
         "name" : "Dries De Maeyer",
@@ -3127,14 +3127,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "filter_with_counts",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_counts/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/filter_with_counts/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_counts"
@@ -3148,14 +3148,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_scrublet/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "filter_with_scrublet",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/filter_with_scrublet/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/filter_with_scrublet/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/filter_with_scrublet"
@@ -3169,14 +3169,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "do_filter",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/do_filter/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/do_filter/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/do_filter"
@@ -3190,14 +3190,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/filter/delimit_fraction/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "delimit_fraction",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/filter/delimit_fraction/config.vsh.yaml",
           "functionalityNamespace" : "filter",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/filter/delimit_fraction/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/filter/delimit_fraction"
@@ -3211,14 +3211,14 @@ meta = [
         "foundConfigPath" : "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml",
         "configInfo" : {
           "functionalityName" : "qc",
-          "git_tag" : "1.0.0rc1",
+          "git_tag" : "1.0.0rc1-1-g4c219ba08e",
           "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
           "viash_version" : "0.8.5",
           "config" : "/home/runner/work/openpipeline/openpipeline/src/workflows/qc/qc/config.vsh.yaml",
           "functionalityNamespace" : "workflows/qc",
           "output" : "",
           "platform" : "",
-          "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+          "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
           "executable" : "/nextflow/workflows/qc/qc/main.nf"
         },
         "writtenPath" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/qc/qc"
@@ -3285,9 +3285,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/nextflow/workflows/rna/rna_singlesample",
     "viash_version" : "0.8.5",
-    "git_commit" : "ac02e9747ee677373b09256e2f648537b9d80692",
+    "git_commit" : "4c219ba08e8bfeff5bb53ec177f992ce5c8ce20e",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "1.0.0rc1"
+    "git_tag" : "1.0.0rc1-1-g4c219ba08e"
   }
 }'''))
 ]
diff --git a/target/nextflow/workflows/rna/rna_singlesample/nextflow.config b/target/nextflow/workflows/rna/rna_singlesample/nextflow.config
index 6e8aab466be..0f2a4378c6b 100644
--- a/target/nextflow/workflows/rna/rna_singlesample/nextflow.config
+++ b/target/nextflow/workflows/rna/rna_singlesample/nextflow.config
@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/rna/rna_singlesample'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '1.0.0rc2'
+  version = '1.0.0-rc2'
   description = 'Processing unimodal single-sample RNA transcriptomics data.'
   author = 'Dries De Maeyer, Robrecht Cannoodt, Dries Schaumont'
 }