diff --git a/.gitmodules b/.gitmodules index 5055fda..18a9212 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,3 +1,3 @@ -[submodule "hugo/themes/paper"] - path = hugo/themes/paper - url = https://github.com/nanxiaobei/hugo-paper +[submodule "hugo/themes/PaperMod"] + path = hugo/themes/PaperMod + url = https://github.com/adityatelange/hugo-PaperMod.git diff --git a/_config.yml b/_config.yml deleted file mode 100644 index fa61d1f..0000000 --- a/_config.yml +++ /dev/null @@ -1,3 +0,0 @@ -remote_theme: pages-themes/minimal@v0.2.0 -plugins: -- jekyll-remote-theme # add this line to the plugins list if you already have one \ No newline at end of file diff --git a/hugo/hugo.toml b/hugo/hugo.toml deleted file mode 100644 index dcbb8e0..0000000 --- a/hugo/hugo.toml +++ /dev/null @@ -1,9 +0,0 @@ -baseURL = 'https://openpaul.github.io' -languageCode = 'en-us' -title = 'Genome Graphs Galore' -theme = ["paper_white", "paper"] - -[params] -github = 'openpaul/openpaul.github.io' -name = 'Hello' -bio = 'Hello! I’m a computational biologist with a passion for biology and nature. My interests lie at the intersection of genomics and data science, and I’m excited to share some of my projects here.' diff --git a/hugo/hugo.yaml b/hugo/hugo.yaml new file mode 100644 index 0000000..f312dbc --- /dev/null +++ b/hugo/hugo.yaml @@ -0,0 +1,40 @@ +baseURL: 'https://openpaul.github.io' +languageCode: 'en-us' +title: 'Genome Graphs Galore' +theme: + - "PaperMod" +paginate: 1000 + +author: "Paul" + +params: + github: 'openpaul/openpaul.github.io' + + homeInfoParams: + Title: "Hi" + Content: 'I’m a computational biologist with a passion for biology and nature. + My interests lie at the intersection of genomics and data science, and I’m excited to share some of my projects here. + I write about things I learn and find interesting. This blog is my way of getting some hands on time with a wider range of topics.' + + + socialIcons: + - name: "rss" + url: "./index.xml" + - name: + + ShowShareButtons: false + ShowReadingTime: true + showToc: true + TocOpen: false + editPost: + URL: "https://github.com/openpaul/openpaul.github.io/tree/main/posts" + Text: "Suggest Changes" # edit text + appendFilePath: false # to append file path to Edit link + + ShowPostNavLinks: true + ShowCodeCopyButtons: true + +outputs: + home: + - HTML + - RSS \ No newline at end of file diff --git a/hugo/themes/PaperMod b/hugo/themes/PaperMod new file mode 160000 index 0000000..a2eb47b --- /dev/null +++ b/hugo/themes/PaperMod @@ -0,0 +1 @@ +Subproject commit a2eb47bb4b805116dcd34c1605d39835121f8dbe diff --git a/hugo/themes/paper b/hugo/themes/paper deleted file mode 160000 index 2ca2e11..0000000 --- a/hugo/themes/paper +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 2ca2e11f977324c9ff6d510cf36e03c547dc1ec2 diff --git a/posts/2024-09-05-single-cell-mouse.ipynb b/posts/2024-09-05-single-cell-mouse.ipynb index d4a9d1c..b2058d2 100644 --- a/posts/2024-09-05-single-cell-mouse.ipynb +++ b/posts/2024-09-05-single-cell-mouse.ipynb @@ -10,7 +10,7 @@ "source": [ "+++\n", "title = 'Processing Single-Cell data from Mouse'\n", - "date = 2024-09-05T08:00:00+00:00\n", + "date = 2024-09-23T08:00:00+00:00\n", "draft = true\n", "+++" ] diff --git a/ruff.toml b/ruff.toml new file mode 100644 index 0000000..9409989 --- /dev/null +++ b/ruff.toml @@ -0,0 +1,2 @@ +line-length = 80 +indent-width = 4 \ No newline at end of file